Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005623.1

Orthogroup ID

OG0006180

Physical Location & Seq

Genomic Coordinates Reverse (-)

10571 .. 12005

Gene Structure 1435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005623.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

atggaaccaccctcttcagactgtagaggtgcagaagcagtactaaatctccaacccagctcgtcaattcctattacatatcaccccctctttggtcctcacaatgatctgatcctccttgaacttgatgagaaactcctccctgatatccttcaccaaagagtgactgttagaggacagcctgatgaagatgcagtcatctgcacggaatcaaagacttacgcaatcaagtctgttggaacttcgaattctgttttcctcatacccccatcttgtcaatttaattcttttgaagaaccaaaatgttttaatgagaattatcatgaccggcaatctgctgcatctgtccttaagattgcacctggtaccatggagcttgttgaaattgctccaagacttgacaagctcaggttgctactttctgagaatccttacaaaactgaggaggacactgaaatggaagaactggggggcatggaaagagagaatgtaggactgtatagatgggaagatcttattgagaagattcaagcaagtaacgaggagttaaggaatgcgttacaggctctttcagctgtggagattgatgggtactggagaattgtggatgaaaggtacatggatacgatgctaaggatacttttgcacaatgcagtgttgaatgactggtcatttgcctcacttaatcaagatgaggttgttaatgtgctggtatcagatggctttcctcgcaaacttgcaaatcattgcctggatgcctttggtagtaaggtggataaaggtgtgggcacaagtaatacatggaagttggatgagaggaaagtgtgtgtgcactttgcaatagaaatcttgagagacgggaagaggaaaatggagagtttcatggaggagtggatgcaaaaaattcctgaagggatgcaagcaagttttgacatgttggaaggtgaagttttgaccgagaagattggcattgagacatggatccgtgccttccgtgtttcatcactgccgggcaatcccgcagagcgtttctccatcctgtttaaagagcgtccgaaatgggagttgaagaatctacagcccttcatcagggacttgaatgtgcccggtctttctgcagaaggtttgcttcttaagtacacgagaagattacaaccaactatggacacagaaccagttttcagctcaagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dcc1

Protein Analysis

397

Amino Acids

45.31

Weight (kDa)

4.94

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006180)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44580 AT2G44580
fragaria_vesca	FvH4_1g25731
malus_domestica	MD02G1227400.v1.1 MD07G1086000.v1.1
prunus_persica	Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1 Prupe.2G112300_v2.0.a1
pyrus_communis	pycom02g19620 pycom07g06900
rosa_chinensis	RchiOBHm_Chr1g0343251
rosa_laevigata	RLG00000028979 RLG00000028982
rosa_multiflora	Rmu_sc0005623.1_g000001
rosa_roxburghii	Rroxscaffold_4G00310840
rosa_rugosa	Rorug01G0166300
rosa_samantha	Rh1AG181700 Rh1BG149900 Rh1CG168500 Rh1DG181800
rosa_wichuraiana	Rw1G015070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	365
AccB1I	GGYRCC	1 cut(s)	365
AciI	CCGC	1 cut(s)	1020
AclWI	GGATC	3 cut(s)	106, 976, 989
AcsI	RAATTY	2 cut(s)	247, 903
AcuI	CTGAAG	1 cut(s)	930
AfaI	GTAC	5 cut(s)	42, 367, 593, 617, 1139
AfiI	CCNNNNNNNGG	2 cut(s)	92, 1089
AflII	CTTAAG	2 cut(s)	350, 1133
AflIII	ACRYGT	1 cut(s)	933
AgsI	TTSAA	7 cut(s)	122, 293, 383, 530, 661, 1069, 1099
AjnI	CCWGG	2 cut(s)	361, 750
AluBI	AGCT	5 cut(s)	60, 376, 406, 575, 1185
AluI	AGCT	5 cut(s)	60, 376, 406, 575, 1185
Alw21I	GWGCWC	1 cut(s)	834
Alw26I	GTCTC	2 cut(s)	849, 968
Alw44I	GTGCAC	1 cut(s)	830
AlwI	GGATC	3 cut(s)	106, 976, 989
ApaLI	GTGCAC	1 cut(s)	830
ApeKI	GCWGC	1 cut(s)	338
ApoI	RAATTY	2 cut(s)	247, 903
ArsI	GACNNNNNNTTYG	2 cut(s)	656, 688
Asp718I	GGTACC	1 cut(s)	365
AspS9I	GGNCC	1 cut(s)	95
AsuC2I	CCSGG	2 cut(s)	1011, 1107
AsuHPI	GGTGA	3 cut(s)	74, 146, 956
AsuII	TTCGAA	1 cut(s)	245
AvaII	GGWCC	1 cut(s)	95
BaeGI	GKGCMC	3 cut(s)	791, 834, 1107
BamHI	GGATCC	1 cut(s)	981
BanI	GGYRCC	1 cut(s)	365
BauI	CACGAG	1 cut(s)	1141
Bbv12I	GWGCWC	1 cut(s)	834
BbvI	GCAGC	1 cut(s)	325
BccI	CCATC	5 cut(s)	277, 498, 581, 713, 1043
BciT130I	CCWGG	2 cut(s)	363, 752
BciVI	GTATCC	2 cut(s)	616, 630
BcnI	CCSGG	2 cut(s)	1011, 1107
BcoDI	GTCTC	2 cut(s)	849, 968
BfmI	CTRYAG	3 cut(s)	22, 1076, 1116
BfrI	CTTAAG	2 cut(s)	350, 1133
BfuI	GTATCC	2 cut(s)	616, 630
BglII	AGATCT	1 cut(s)	511
BisI	GCNGC	1 cut(s)	339
BlsI	GCNGC	1 cut(s)	340
BmcAI	AGTACT	1 cut(s)	42
Bme1390I	CCNGG	4 cut(s)	363, 752, 1011, 1107
Bme18I	GGWCC	1 cut(s)	95
BmgT120I	GGNCC	1 cut(s)	95
BmiI	GGNNCC	3 cut(s)	6, 367, 983
BmrFI	CCNGG	4 cut(s)	363, 752, 1011, 1107
BmrI	ACTGGG	1 cut(s)	476
BmsI	GCATC	6 cut(s)	181, 350, 618, 745, 885, 906
BmuI	ACTGGG	1 cut(s)	476
BplI	GAGNNNNNCTC	2 cut(s)	1016, 1048
BpmI	CTGGAG	1 cut(s)	616
Bpu10I	CCTNAGC	2 cut(s)	407, 632
Bpu14I	TTCGAA	1 cut(s)	245
BpuEI	CTTGAG	2 cut(s)	871, 1171
BpuMI	CCSGG	2 cut(s)	1011, 1107
BsaJI	CCNNGG	1 cut(s)	369
BsaXI	ACNNNNNCTCC	2 cut(s)	33, 63
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 1089
Bse118I	RCCGGY	1 cut(s)	327
Bse1I	ACTGG	4 cut(s)	471, 599, 671, 1175
Bse3DI	GCAATG	1 cut(s)	745
BseBI	CCWGG	2 cut(s)	363, 752
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	6 cut(s)	613, 760, 817, 900, 921, 1035
BseLI	CCNNNNNNNGG	2 cut(s)	92, 1089
BseMI	GCAATG	1 cut(s)	745
BseMII	CTCAG	3 cut(s)	414, 421, 432
BseNI	ACTGG	4 cut(s)	471, 599, 671, 1175
BseRI	GAGGAG	4 cut(s)	128, 458, 557, 902
BseSI	GKGCMC	3 cut(s)	791, 834, 1107
BseXI	GCAGC	1 cut(s)	325
BseYI	CCCAGC	1 cut(s)	56
BsgI	GTGCAG	2 cut(s)	51, 187
BshNI	GGYRCC	1 cut(s)	365
BsiHKAI	GWGCWC	1 cut(s)	834
BsiSI	CCGG	3 cut(s)	328, 1010, 1107
BslFI	GGGAC	1 cut(s)	1106
BslI	CCNNNNNNNGG	2 cut(s)	92, 1089
BsmAI	GTCTC	2 cut(s)	849, 968
BsmBI	CGTCTC	1 cut(s)	849
BsmFI	GGGAC	1 cut(s)	1106
BsmI	GAATGC	1 cut(s)	559
Bsp119I	TTCGAA	1 cut(s)	245
Bsp1286I	GDGCHC	3 cut(s)	791, 834, 1107
Bsp143I	GATC	4 cut(s)	106, 111, 511, 981
Bsp19I	CCATGG	1 cut(s)	369
BspACI	CCGC	1 cut(s)	1020
BspCNI	CTCAG	3 cut(s)	415, 420, 433
BspHI	TCATGA	1 cut(s)	322
BspLI	GGNNCC	3 cut(s)	6, 367, 983
BspMAI	CTGCAG	1 cut(s)	1120
BspPI	GGATC	3 cut(s)	106, 976, 989
BspT104I	TTCGAA	1 cut(s)	245
BspT107I	GGYRCC	1 cut(s)	365
BspTI	CTTAAG	2 cut(s)	350, 1133
BsrDI	GCAATG	1 cut(s)	745
BsrFI	RCCGGY	1 cut(s)	327
BsrI	ACTGG	4 cut(s)	471, 599, 671, 1175
BssAI	RCCGGY	1 cut(s)	327
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	4 cut(s)	106, 111, 511, 981
BssSI	CACGAG	1 cut(s)	1141
BssT1I	CCWWGG	1 cut(s)	369
Bst2BI	CACGAG	1 cut(s)	1141
Bst2UI	CCWGG	2 cut(s)	363, 752
Bst4CI	ACNGT	3 cut(s)	23, 169, 498
Bst6I	CTCTTC	2 cut(s)	19, 857
BstAFI	CTTAAG	2 cut(s)	350, 1133
BstBI	TTCGAA	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	921
BstDEI	CTNAG	4 cut(s)	407, 423, 441, 632
BstDSI	CCRYGG	1 cut(s)	369
BstENI	CCTNNNNNAGG	1 cut(s)	1087
BstF5I	GGATG	6 cut(s)	613, 760, 817, 900, 921, 1035
BstKTI	GATC	4 cut(s)	109, 114, 514, 984
BstMAI	GTCTC	2 cut(s)	849, 968
BstMBI	GATC	4 cut(s)	106, 111, 511, 981
BstMWI	GCNNNNNNNGC	4 cut(s)	412, 563, 572, 729
BstNI	CCWGG	2 cut(s)	363, 752
BstNSI	RCATGY	1 cut(s)	937
BstSCI	CCNGG	4 cut(s)	361, 750, 1009, 1105
BstSFI	CTRYAG	3 cut(s)	22, 1076, 1116
BstSLI	GKGCMC	3 cut(s)	791, 834, 1107
BstV1I	GCAGC	1 cut(s)	325
BstX2I	RGATCY	2 cut(s)	511, 981
BstYI	RGATCY	2 cut(s)	511, 981
BsuI	GTATCC	2 cut(s)	616, 630
BtgI	CCRYGG	1 cut(s)	369
BtsCI	GGATG	6 cut(s)	613, 760, 817, 900, 921, 1035
BtsI	GCAGTG	2 cut(s)	660, 1004
BtsIMutI	CAGTG	3 cut(s)	450, 660, 1004
Cac8I	GCNNGC	1 cut(s)	921
CciI	TCATGA	1 cut(s)	322
Cfr10I	RCCGGY	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	95
CseI	GACGC	1 cut(s)	1040
CsiI	ACCWGGT	1 cut(s)	361
Csp6I	GTAC	5 cut(s)	41, 366, 592, 616, 1138
CviAII	CATG	8 cut(s)	323, 370, 475, 619, 801, 883, 934, 978
CviJI	RGCY	9 cut(s)	60, 181, 376, 406, 566, 575, 723, 1081, 1185
CviKI_1	RGCY	9 cut(s)	60, 181, 376, 406, 566, 575, 723, 1081, 1185
CviQI	GTAC	5 cut(s)	41, 366, 592, 616, 1138
DdeI	CTNAG	4 cut(s)	407, 423, 441, 632
DpnI	GATC	4 cut(s)	108, 113, 513, 983
DpnII	GATC	4 cut(s)	106, 111, 511, 981
DraI	TTTAAA	1 cut(s)	1045
Eam1104I	CTCTTC	2 cut(s)	19, 857
EarI	CTCTTC	2 cut(s)	19, 857
Eco130I	CCWWGG	1 cut(s)	369
Eco32I	GATATC	1 cut(s)	148
Eco47I	GGWCC	1 cut(s)	95
Eco57I	CTGAAG	1 cut(s)	930
EcoNI	CCTNNNNNAGG	1 cut(s)	1087
EcoRI	GAATTC	1 cut(s)	247
EcoRII	CCWGG	2 cut(s)	361, 750
EcoRV	GATATC	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	369
Esp3I	CGTCTC	1 cut(s)	849
FaeI	CATG	8 cut(s)	326, 373, 478, 622, 804, 886, 937, 981
FalI	AAGNNNNNCTT	2 cut(s)	1113, 1145
FaqI	GGGAC	1 cut(s)	1106
FatI	CATG	8 cut(s)	322, 369, 474, 618, 800, 882, 933, 977
FauI	CCCGC	1 cut(s)	1027
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	6 cut(s)	620, 767, 824, 907, 928, 1022
Fsp4HI	GCNGC	1 cut(s)	339
GluI	GCNGC	1 cut(s)	339
GsaI	CCCAGC	1 cut(s)	60
GsuI	CTGGAG	1 cut(s)	616
HapII	CCGG	3 cut(s)	328, 1010, 1107
HgaI	GACGC	1 cut(s)	1040
Hin1II	CATG	8 cut(s)	326, 373, 478, 622, 804, 886, 937, 981
HinfI	GANTC	4 cut(s)	209, 427, 526, 1072
HpaII	CCGG	3 cut(s)	328, 1010, 1107
HphI	GGTGA	3 cut(s)	74, 146, 956
Hpy166II	GTNNAC	2 cut(s)	832, 1140
Hpy188I	TCNGA	5 cut(s)	19, 111, 424, 718, 1056
Hpy188III	TCNNGA	5 cut(s)	323, 689, 850, 908, 1188
Hpy8I	GTNNAC	2 cut(s)	832, 1140
HpyAV	CCTTC	6 cut(s)	161, 905, 935, 1000, 1093, 1115
HpyCH4III	ACNGT	3 cut(s)	23, 169, 498
HpyF10VI	GCNNNNNNNGC	4 cut(s)	412, 563, 572, 729
HpyF3I	CTNAG	4 cut(s)	407, 423, 441, 632
Hsp92II	CATG	8 cut(s)	326, 373, 478, 622, 804, 886, 937, 981
KpnI	GGTACC	1 cut(s)	369
Kzo9I	GATC	4 cut(s)	106, 111, 511, 981
LmnI	GCTCC	2 cut(s)	373, 394
Lsp1109I	GCAGC	1 cut(s)	325
LweI	GCATC	6 cut(s)	181, 350, 618, 745, 885, 906
MabI	ACCWGGT	1 cut(s)	361
MaeIII	GTNAC	3 cut(s)	163, 536, 558
MalI	GATC	4 cut(s)	108, 113, 513, 983
MboI	GATC	4 cut(s)	106, 111, 511, 981
MflI	RGATCY	2 cut(s)	511, 981
MhlI	GDGCHC	3 cut(s)	791, 834, 1107
MluCI	AATT	8 cut(s)	66, 247, 278, 283, 316, 384, 600, 903
MmeI	TCCRAC	4 cut(s)	76, 217, 789, 918
MseI	TTAA	8 cut(s)	282, 309, 351, 548, 684, 702, 1044, 1134
MslI	CAYNNNNRTG	1 cut(s)	455
MspA1I	CMGCKG	1 cut(s)	575
MspCI	CTTAAG	2 cut(s)	350, 1133
MspI	CCGG	3 cut(s)	328, 1010, 1107
MspR9I	CCNGG	4 cut(s)	363, 752, 1011, 1107
Mva1269I	GAATGC	1 cut(s)	559
MvaI	CCWGG	2 cut(s)	363, 752
MwoI	GCNNNNNNNGC	4 cut(s)	412, 563, 572, 729
NciI	CCSGG	2 cut(s)	1011, 1107
NcoI	CCATGG	1 cut(s)	369
NdeII	GATC	4 cut(s)	106, 111, 511, 981
NlaIII	CATG	8 cut(s)	326, 373, 478, 622, 804, 886, 937, 981
NlaIV	GGNNCC	3 cut(s)	6, 367, 983
NmuCI	GTSAC	1 cut(s)	163
NspI	RCATGY	1 cut(s)	937
NspV	TTCGAA	1 cut(s)	245
PagI	TCATGA	1 cut(s)	322
PciI	ACATGT	1 cut(s)	933
PctI	GAATGC	1 cut(s)	559
PfeI	GAWTC	4 cut(s)	209, 427, 526, 1072
PkrI	GCNGC	1 cut(s)	340
PscI	ACATGT	1 cut(s)	933
Psp6I	CCWGG	2 cut(s)	361, 750
PspFI	CCCAGC	1 cut(s)	56
PspGI	CCWGG	2 cut(s)	361, 750
PspN4I	GGNNCC	3 cut(s)	6, 367, 983
PspPI	GGNCC	1 cut(s)	95
PstI	CTGCAG	1 cut(s)	1120
PsuI	RGATCY	2 cut(s)	511, 981
PvuII	CAGCTG	1 cut(s)	575
RsaI	GTAC	5 cut(s)	42, 367, 593, 617, 1139
RsaNI	GTAC	5 cut(s)	41, 366, 592, 616, 1138
RseI	CAYNNNNRTG	1 cut(s)	455
SaqAI	TTAA	8 cut(s)	282, 309, 351, 548, 684, 702, 1044, 1134
SatI	GCNGC	1 cut(s)	339
Sau3AI	GATC	4 cut(s)	106, 111, 511, 981
Sau96I	GGNCC	1 cut(s)	95
ScaI	AGTACT	1 cut(s)	42
ScrFI	CCNGG	4 cut(s)	363, 752, 1011, 1107
SduI	GDGCHC	3 cut(s)	791, 834, 1107
SexAI	ACCWGGT	1 cut(s)	361
SfaNI	GCATC	6 cut(s)	181, 350, 618, 745, 885, 906
SfcI	CTRYAG	3 cut(s)	22, 1076, 1116
SfuI	TTCGAA	1 cut(s)	245
SinI	GGWCC	1 cut(s)	95
SmiMI	CAYNNNNRTG	1 cut(s)	455
SmlI	CTYRAG	4 cut(s)	350, 850, 1133, 1186
SmoI	CTYRAG	4 cut(s)	350, 850, 1133, 1186
Sse9I	AATT	8 cut(s)	66, 247, 278, 283, 316, 384, 600, 903
SsiI	CCGC	1 cut(s)	1020
StyD4I	CCNGG	4 cut(s)	361, 750, 1009, 1105
StyI	CCWWGG	1 cut(s)	369
TaaI	ACNGT	3 cut(s)	23, 169, 498
TaqI	TCGA	1 cut(s)	245
TaqII	GACCGA	1 cut(s)	971
TasI	AATT	8 cut(s)	66, 247, 278, 283, 316, 384, 600, 903
TatI	WGTACW	2 cut(s)	40, 1137
TfiI	GAWTC	4 cut(s)	209, 427, 526, 1072
Tru1I	TTAA	8 cut(s)	282, 309, 351, 548, 684, 702, 1044, 1134
Tru9I	TTAA	8 cut(s)	282, 309, 351, 548, 684, 702, 1044, 1134
TscAI	CASTG	3 cut(s)	457, 660, 1011
TseFI	GTSAC	1 cut(s)	163
TseI	GCWGC	1 cut(s)	338
Tsp45I	GTSAC	1 cut(s)	163
TspDTI	ATGAA	5 cut(s)	201, 624, 871, 990, 1075
TspGWI	ACGGA	3 cut(s)	221, 974, 983
TspRI	CASTG	3 cut(s)	457, 660, 1011
Vha464I	CTTAAG	2 cut(s)	350, 1133
VneI	GTGCAC	1 cut(s)	830
VpaK11BI	GGWCC	1 cut(s)	95
XagI	CCTNNNNNAGG	1 cut(s)	1087
XapI	RAATTY	2 cut(s)	247, 903
XceI	RCATGY	1 cut(s)	937
ZrmI	AGTACT	1 cut(s)	42

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.