AT2G45060

Uncharacterised conserved protein UCP022280 (InterPro IPR016803)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0013300
Physical Location & Seq
Reverse (-)
18584291 .. 18586873
2583 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G45060.1

Sequence Viewer

Length: 819 bp
ATGGCAGCGTTGGGAGAATCATCATCCTCAGAGATGGACAACGCGAAATCGCCGGAGATTCAACAATCTTCGCCAGTGCATCCGCCGGAGTATCAGAAGATCGCAACGACGACGGTGGAAAATGCGGCTTCCTGGATCGATGATGCGTTGCGTCAGGCGCTTGTTTACCAGAAGACGATCACGGAGACGGTGGATTCTACCATTGACGCCTCCAAAGCTCGATTGTCTCAGATTCGAGATACTTCTGTAGCTCACACGAGCCAAACCATCGATTCTCTTCGAGACATTGCTTCTGAGTATAACGTTTACGAGCAAATGGTGTTTGGGAAGATCAAAGATGGTGTGAATGTTGCTGCATCTCATCCGCTAATATCAGGCACCTTAGCTTTTGGAGTTGGGATTTTTGCTCTGAAAAAGACCAGAAGATTTGTATATTACAATACTGTACGCATGTTTGTTAGTGAAGAGGCTTTGCTTTCTAGAGCAGATCTTAAAGTAAAAGAGTTGCGACAATCAATGGATCGTCTTAAAGCCGAGAGTGAAAAGTTAGAGAGAGTTGCAACTGTGGCAGAAGAGGAATTCATTAGAGGAAGGATGAAACTCAGGCAAGCAGGCAAACAAATCAGAGGTGCGATCAGCTCAGCTTATAAGATTGAAAAGCAAGCAGCAGGTTTGAAAGATGTACTAAAAGAACTGCCAACGAGAGAAGCTTCTCGATTCCGCACTCAAATATCGAAGCGTGCTTCTGAAGTGAAGCAAGAGAGAAACGCTTTGACAAAGGAAGTGAACAAGATCAGCAATTATGGTATCTCCGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

30.34

Weight (kDa)

9.39

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013300)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45060
fragaria_vesca FvH4_7g10760 FvH4_7g10760
malus_domestica MD07G1087600.v1.1
prunus_persica Prupe.2G135800_v2.0.a1
pyrus_communis pycom07g07010
rosa_chinensis RchiOBHm_Chr1g0348701
rosa_laevigata RLG00000028629
rosa_multiflora Rmu_sc0001674.1_g000007
rosa_roxburghii Rroxscaffold_4G00306730
rosa_rugosa Rorug01G0196800
rosa_samantha Rh1AG025500 Rh1AG214300 Rh1BG180900 Rh1CG023900 Rh1CG199000 Rh1DG210900
rosa_wichuraiana Rw1G018160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 648
Acc36I ACCTGC 1 cut(s) 659
AccB1I GGYRCC 1 cut(s) 377
AccII CGCG 1 cut(s) 44
AciI CCGC 4 cut(s) 83, 125, 365, 721
AclI AACGTT 1 cut(s) 303
AclWI GGATC 2 cut(s) 143, 528
AcsI RAATTY 1 cut(s) 578
AcuI CTGAAG 1 cut(s) 768
AcyI GRCGYC 1 cut(s) 207
AfaI GTAC 2 cut(s) 447, 684
AgsI TTSAA 3 cut(s) 62, 656, 676
AjnI CCWGG 1 cut(s) 131
AluBI AGCT 6 cut(s) 218, 251, 386, 639, 644, 710
AluI AGCT 6 cut(s) 218, 251, 386, 639, 644, 710
Alw26I GTCTC 3 cut(s) 179, 231, 276
AlwI GGATC 2 cut(s) 143, 528
ApeKI GCWGC 3 cut(s) 5, 353, 665
ApoI RAATTY 1 cut(s) 578
AspLEI GCGC 1 cut(s) 160
BaeI ACNNNNGTAYC 2 cut(s) 231, 264
BanI GGYRCC 1 cut(s) 377
BauI CACGAG 1 cut(s) 256
BbsI GAAGAC 1 cut(s) 179
BbvI GCAGC 3 cut(s) 17, 340, 677
BccI CCATC 3 cut(s) 28, 275, 332
BciT130I CCWGG 1 cut(s) 133
BcoDI GTCTC 3 cut(s) 179, 231, 276
BfaI CTAG 1 cut(s) 480
BfmI CTRYAG 1 cut(s) 246
BfoI RGCGCY 1 cut(s) 161
BfuAI ACCTGC 1 cut(s) 659
BglII AGATCT 1 cut(s) 487
BisI GCNGC 4 cut(s) 6, 126, 354, 666
BlpI GCTNAGC 1 cut(s) 640
BlsI GCNGC 4 cut(s) 7, 127, 355, 667
Bme1390I CCNGG 1 cut(s) 133
BmiI GGNNCC 1 cut(s) 379
BmrFI CCNGG 1 cut(s) 133
BmsI GCATC 3 cut(s) 88, 133, 365
BpiI GAAGAC 1 cut(s) 179
Bpu10I CCTNAGC 1 cut(s) 382
Bpu1102I GCTNAGC 1 cut(s) 640
Bsa29I ATCGAT 2 cut(s) 138, 270
BsaHI GRCGYC 1 cut(s) 207
Bse1I ACTGG 1 cut(s) 74
Bse3DI GCAATG 1 cut(s) 285
BseBI CCWGG 1 cut(s) 133
BseCI ATCGAT 2 cut(s) 138, 270
BseGI GGATG 4 cut(s) 23, 79, 361, 600
BseMI GCAATG 1 cut(s) 285
BseMII CTCAG 5 cut(s) 42, 242, 285, 616, 654
BseNI ACTGG 1 cut(s) 74
BseXI GCAGC 3 cut(s) 17, 340, 677
Bsh1236I CGCG 1 cut(s) 44
BshNI GGYRCC 1 cut(s) 377
BshVI ATCGAT 2 cut(s) 138, 270
BsiSI CCGG 2 cut(s) 53, 86
BsmAI GTCTC 3 cut(s) 179, 231, 276
BsmBI CGTCTC 1 cut(s) 179
Bsp143I GATC 8 cut(s) 99, 135, 177, 330, 487, 520, 633, 792
Bsp1720I GCTNAGC 1 cut(s) 640
BspACI CCGC 4 cut(s) 83, 125, 365, 721
BspCNI CTCAG 5 cut(s) 41, 241, 286, 615, 653
BspDI ATCGAT 2 cut(s) 138, 270
BspFNI CGCG 1 cut(s) 44
BspLI GGNNCC 1 cut(s) 379
BspMI ACCTGC 1 cut(s) 659
BspPI GGATC 2 cut(s) 143, 528
BspT107I GGYRCC 1 cut(s) 377
BsrDI GCAATG 1 cut(s) 285
BsrI ACTGG 1 cut(s) 74
BssMI GATC 8 cut(s) 99, 135, 177, 330, 487, 520, 633, 792
BssNI GRCGYC 1 cut(s) 207
BssSI CACGAG 1 cut(s) 256
Bst2BI CACGAG 1 cut(s) 256
Bst2UI CCWGG 1 cut(s) 133
Bst4CI ACNGT 4 cut(s) 115, 190, 445, 565
Bst6I CTCTTC 3 cut(s) 282, 459, 567
BstACI GRCGYC 1 cut(s) 207
BstC8I GCNNGC 4 cut(s) 609, 613, 663, 741
BstDEI CTNAG 6 cut(s) 28, 228, 294, 382, 602, 640
BstF5I GGATG 4 cut(s) 23, 79, 361, 600
BstFNI CGCG 1 cut(s) 44
BstH2I RGCGCY 1 cut(s) 161
BstHHI GCGC 1 cut(s) 160
BstKTI GATC 8 cut(s) 102, 138, 180, 333, 490, 523, 636, 795
BstMAI GTCTC 3 cut(s) 179, 231, 276
BstMBI GATC 8 cut(s) 99, 135, 177, 330, 487, 520, 633, 792
BstMWI GCNNNNNNNGC 3 cut(s) 157, 215, 566
BstNI CCWGG 1 cut(s) 133
BstNSI RCATGY 1 cut(s) 454
BstSCI CCNGG 1 cut(s) 131
BstSFI CTRYAG 1 cut(s) 246
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 3 cut(s) 17, 340, 677
BstV2I GAAGAC 1 cut(s) 179
BstX2I RGATCY 1 cut(s) 487
BstYI RGATCY 1 cut(s) 487
Bsu15I ATCGAT 2 cut(s) 138, 270
BsuTUI ATCGAT 2 cut(s) 138, 270
BtsCI GGATG 4 cut(s) 23, 79, 361, 600
BtsIMutI CAGTG 1 cut(s) 81
BveI ACCTGC 1 cut(s) 659
Cac8I GCNNGC 4 cut(s) 609, 613, 663, 741
CfoI GCGC 1 cut(s) 160
ClaI ATCGAT 2 cut(s) 138, 270
CseI GACGC 2 cut(s) 140, 215
Csp6I GTAC 2 cut(s) 446, 683
CviAII CATG 1 cut(s) 451
CviQI GTAC 2 cut(s) 446, 683
DdeI CTNAG 6 cut(s) 28, 228, 294, 382, 602, 640
DpnI GATC 8 cut(s) 101, 137, 179, 332, 489, 522, 635, 794
DpnII GATC 8 cut(s) 99, 135, 177, 330, 487, 520, 633, 792
Eam1104I CTCTTC 3 cut(s) 282, 459, 567
EarI CTCTTC 3 cut(s) 282, 459, 567
EciI GGCGGA 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 768
EcoRI GAATTC 1 cut(s) 578
EcoRII CCWGG 1 cut(s) 131
Esp3I CGTCTC 1 cut(s) 179
FaeI CATG 1 cut(s) 454
FaiI YATR 6 cut(s) 300, 433, 452, 648, 804, 817
FatI CATG 1 cut(s) 450
Fnu4HI GCNGC 4 cut(s) 6, 126, 354, 666
FokI GGATG 4 cut(s) 10, 66, 348, 607
Fsp4HI GCNGC 4 cut(s) 6, 126, 354, 666
FspBI CTAG 1 cut(s) 480
GlaI GCGC 1 cut(s) 159
GluI GCNGC 4 cut(s) 6, 126, 354, 666
HaeII RGCGCY 1 cut(s) 161
HapII CCGG 2 cut(s) 53, 86
HgaI GACGC 2 cut(s) 140, 215
HhaI GCGC 1 cut(s) 160
Hin1I GRCGYC 1 cut(s) 207
Hin1II CATG 1 cut(s) 454
Hin6I GCGC 1 cut(s) 158
HinP1I GCGC 1 cut(s) 158
HindIII AAGCTT 1 cut(s) 708
HinfI GANTC 6 cut(s) 17, 58, 194, 232, 272, 717
HpaII CCGG 2 cut(s) 53, 86
Hpy166II GTNNAC 3 cut(s) 166, 307, 787
Hpy188I TCNGA 7 cut(s) 31, 96, 231, 295, 411, 626, 748
Hpy188III TCNNGA 4 cut(s) 236, 281, 480, 714
Hpy8I GTNNAC 3 cut(s) 166, 307, 787
Hpy99I CGWCG 2 cut(s) 112, 115
HpyAV CCTTC 1 cut(s) 585
HpyCH4III ACNGT 4 cut(s) 115, 190, 445, 565
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 3 cut(s) 79, 356, 560
HpyF10VI GCNNNNNNNGC 3 cut(s) 157, 215, 566
HpyF3I CTNAG 6 cut(s) 28, 228, 294, 382, 602, 640
HpySE526I ACGT 1 cut(s) 303
Hsp92I GRCGYC 1 cut(s) 207
Hsp92II CATG 1 cut(s) 454
HspAI GCGC 1 cut(s) 158
Kzo9I GATC 8 cut(s) 99, 135, 177, 330, 487, 520, 633, 792
Lsp1109I GCAGC 3 cut(s) 17, 340, 677
LweI GCATC 3 cut(s) 88, 133, 365
MaeI CTAG 1 cut(s) 480
MaeII ACGT 1 cut(s) 303
MalI GATC 8 cut(s) 101, 137, 179, 332, 489, 522, 635, 794
MboI GATC 8 cut(s) 99, 135, 177, 330, 487, 520, 633, 792
MboII GAAGA 8 cut(s) 60, 109, 184, 269, 340, 435, 476, 584
MflI RGATCY 1 cut(s) 487
MluCI AATT 2 cut(s) 578, 799
MnlI CCTC 6 cut(s) 37, 220, 460, 568, 581, 620
MseI TTAA 2 cut(s) 492, 528
MspI CCGG 2 cut(s) 53, 86
MspR9I CCNGG 1 cut(s) 133
MvaI CCWGG 1 cut(s) 133
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 3 cut(s) 157, 215, 566
NdeII GATC 8 cut(s) 99, 135, 177, 330, 487, 520, 633, 792
NlaIII CATG 1 cut(s) 454
NlaIV GGNNCC 1 cut(s) 379
NmeAIII GCCGAG 1 cut(s) 559
NspI RCATGY 1 cut(s) 454
PfeI GAWTC 6 cut(s) 17, 58, 194, 232, 272, 717
PfoI TCCNGGA 1 cut(s) 131
PkrI GCNGC 4 cut(s) 7, 127, 355, 667
PsiI TTATAA 1 cut(s) 648
Psp1406I AACGTT 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 131
PspGI CCWGG 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 379
PsuI RGATCY 1 cut(s) 487
RsaI GTAC 2 cut(s) 447, 684
RsaNI GTAC 2 cut(s) 446, 683
SaqAI TTAA 2 cut(s) 492, 528
SatI GCNGC 4 cut(s) 6, 126, 354, 666
Sau3AI GATC 8 cut(s) 99, 135, 177, 330, 487, 520, 633, 792
ScrFI CCNGG 1 cut(s) 133
SfaNI GCATC 3 cut(s) 88, 133, 365
SfcI CTRYAG 1 cut(s) 246
Sse9I AATT 2 cut(s) 578, 799
SsiI CCGC 4 cut(s) 83, 125, 365, 721
SspMI CTAG 1 cut(s) 480
StyD4I CCNGG 1 cut(s) 131
TaaI ACNGT 4 cut(s) 115, 190, 445, 565
TaiI ACGT 1 cut(s) 306
TaqI TCGA 7 cut(s) 138, 220, 235, 270, 280, 715, 734
TasI AATT 2 cut(s) 578, 799
TatI WGTACW 1 cut(s) 682
TauI GCSGC 1 cut(s) 128
TfiI GAWTC 6 cut(s) 17, 58, 194, 232, 272, 717
Tru1I TTAA 2 cut(s) 492, 528
Tru9I TTAA 2 cut(s) 492, 528
TscAI CASTG 1 cut(s) 81
TseI GCWGC 3 cut(s) 5, 353, 665
TspDTI ATGAA 2 cut(s) 571, 611
TspGWI ACGGA 2 cut(s) 197, 802
TspRI CASTG 1 cut(s) 81
XapI RAATTY 1 cut(s) 578
XbaI TCTAGA 1 cut(s) 479
XceI RCATGY 1 cut(s) 454
XspI CTAG 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.