FvH4_7g10760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0013300
Physical Location & Seq
Reverse (-)
10088724 .. 10094254
5531 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g10760.t1

Sequence Viewer

Length: 825 bp
ATGGCGACGGAACCAGAAACTTCCTCACCGGAAAATCCAATCTTCTCGCCGACCGATTCCTCACCGGAAAAGCCAATCTTCTCGCCCACCGACTCCTTCAGCCACAGCACCGAAACCCTAGATCAACCTCCGACGCCGTGGATCGACTACGCGATTGCGCAGGCTCGGGTTTACCAGAAGAACATCGAAGAGACCCTAAACTCCGCCCTCGAAGCTTCTCGATCACGCCTCTCGCAGTTTCGCGCCACCGGCTCTGCTCATTTGAGCCAAACCATTGACTTAGTGGAAGATGTCAAGACTAACTATGCTGATTATGAGAATACTTTTCTTGCGAAGATTAGAGAGGGTGCTTCTGTTGCGGCTTCACATCCATTGATTACTGGTGGAGTTGCTACTGCTTTGGGGCTTGTGGTTCTAAAAGGACCACGACGCTTCTTGTACTACAAAAGCTTGCGACTTTTAATGAGTGAGGAGTCCTTACTTAACAGAGCTCATATTGAAGTGAAGGAGTTGCGACATGCAATTGACGTTCTAAAGGCTGAAAGTCAAAAATTAGAGATCAGAGCAGCAAATGCCGAAAATGAATTCATACAGGGGAGGAAAAAACTCAGATACGCCGGGCAACAAATCCAAAGTGCGATTGGAACCGGATATAAGATCGAAAGACAAGCAAGGGGTTTAAAAGATATTATAAGAGAACTTCCTAGAAGAGAAGCATCTCTGTTCCGTGATCGAGTTACAAATTTGGTTGATGAGGCGAAGCAAGAAAGGAAAGCCTTGTCAAAGGAGGTCAGAAAAATTAGCAATTATGGGATCTCAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

275

Amino Acids

30.71

Weight (kDa)

8.92

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013300)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45060
fragaria_vesca FvH4_7g10760 FvH4_7g10760
malus_domestica MD07G1087600.v1.1
prunus_persica Prupe.2G135800_v2.0.a1
pyrus_communis pycom07g07010
rosa_chinensis RchiOBHm_Chr1g0348701
rosa_laevigata RLG00000028629
rosa_multiflora Rmu_sc0001674.1_g000007
rosa_roxburghii Rroxscaffold_4G00306730
rosa_rugosa Rorug01G0196800
rosa_samantha Rh1AG025500 Rh1AG214300 Rh1BG180900 Rh1CG023900 Rh1CG199000 Rh1DG210900
rosa_wichuraiana Rw1G018160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 692
Acc16I TGCGCA 1 cut(s) 159
AccII CGCG 2 cut(s) 152, 243
AciI CCGC 2 cut(s) 204, 359
AclWI GGATC 2 cut(s) 149, 821
AcsI RAATTY 2 cut(s) 584, 742
AcuI CTGAAG 1 cut(s) 82
AcyI GRCGYC 1 cut(s) 134
AfaI GTAC 1 cut(s) 440
AgsI TTSAA 1 cut(s) 500
AluBI AGCT 3 cut(s) 215, 450, 491
AluI AGCT 3 cut(s) 215, 450, 491
Alw21I GWGCWC 1 cut(s) 493
Alw26I GTCTC 1 cut(s) 185
AlwI GGATC 2 cut(s) 149, 821
Ama87I CYCGRG 1 cut(s) 165
ApeKI GCWGC 1 cut(s) 566
ApoI RAATTY 2 cut(s) 584, 742
AspLEI GCGC 2 cut(s) 160, 245
AspS9I GGNCC 1 cut(s) 422
AsuC2I CCSGG 1 cut(s) 619
AsuHPI GGTGA 2 cut(s) 18, 54
AvaI CYCGRG 1 cut(s) 165
AvaII GGWCC 1 cut(s) 422
BanII GRGCYC 1 cut(s) 493
Bbv12I GWGCWC 1 cut(s) 493
BbvI GCAGC 1 cut(s) 578
BceAI ACGGC 1 cut(s) 121
BcnI CCSGG 1 cut(s) 619
BcoDI GTCTC 1 cut(s) 185
BfaI CTAG 2 cut(s) 119, 705
BisI GCNGC 2 cut(s) 360, 567
BlsI GCNGC 2 cut(s) 361, 568
Bme1390I CCNGG 1 cut(s) 619
Bme18I GGWCC 1 cut(s) 422
BmeT110I CYCGRG 1 cut(s) 165
BmgT120I GGNCC 1 cut(s) 422
BmiI GGNNCC 2 cut(s) 12, 646
BmrFI CCNGG 1 cut(s) 619
BmsI GCATC 1 cut(s) 725
BpuMI CCSGG 1 cut(s) 619
BsaHI GRCGYC 1 cut(s) 134
BsaI GGTCTC 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 137
BsaWI WCCGGW 3 cut(s) 28, 64, 647
Bse118I RCCGGY 1 cut(s) 248
Bse1I ACTGG 1 cut(s) 385
BseDI CCNNGG 1 cut(s) 137
BseGI GGATG 1 cut(s) 367
BseMII CTCAG 1 cut(s) 622
BseNI ACTGG 1 cut(s) 385
BseRI GAGGAG 1 cut(s) 485
BseXI GCAGC 1 cut(s) 578
Bsh1236I CGCG 2 cut(s) 152, 243
Bsh1285I CGRYCG 1 cut(s) 54
BsiEI CGRYCG 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 493
BsiHKCI CYCGRG 1 cut(s) 165
BsiSI CCGG 5 cut(s) 29, 65, 249, 618, 648
BsmAI GTCTC 1 cut(s) 185
Bso31I GGTCTC 1 cut(s) 185
BsoBI CYCGRG 1 cut(s) 165
Bsp1286I GDGCHC 1 cut(s) 493
Bsp143I GATC 7 cut(s) 121, 141, 221, 558, 657, 730, 813
BspACI CCGC 2 cut(s) 204, 359
BspCNI CTCAG 1 cut(s) 621
BspFNI CGCG 2 cut(s) 152, 243
BspLI GGNNCC 2 cut(s) 12, 646
BspPI GGATC 2 cut(s) 149, 821
BspTNI GGTCTC 1 cut(s) 185
BsrFI RCCGGY 1 cut(s) 248
BsrI ACTGG 1 cut(s) 385
BssAI RCCGGY 1 cut(s) 248
BssECI CCNNGG 1 cut(s) 137
BssMI GATC 7 cut(s) 121, 141, 221, 558, 657, 730, 813
BssNI GRCGYC 1 cut(s) 134
Bst6I CTCTTC 2 cut(s) 183, 703
BstACI GRCGYC 1 cut(s) 134
BstAPI GCANNNNNTGC 1 cut(s) 572
BstC8I GCNNGC 2 cut(s) 162, 452
BstDEI CTNAG 3 cut(s) 280, 608, 817
BstDSI CCRYGG 1 cut(s) 137
BstF5I GGATG 1 cut(s) 367
BstFNI CGCG 2 cut(s) 152, 243
BstHHI GCGC 2 cut(s) 160, 245
BstKTI GATC 7 cut(s) 124, 144, 224, 561, 660, 733, 816
BstMAI GTCTC 1 cut(s) 185
BstMBI GATC 7 cut(s) 121, 141, 221, 558, 657, 730, 813
BstMCI CGRYCG 1 cut(s) 54
BstMWI GCNNNNNNNGC 4 cut(s) 212, 249, 356, 572
BstNSI RCATGY 1 cut(s) 521
BstSCI CCNGG 1 cut(s) 617
BstUI CGCG 2 cut(s) 152, 243
BstV1I GCAGC 1 cut(s) 578
BstX2I RGATCY 1 cut(s) 813
BstYI RGATCY 1 cut(s) 813
BtgI CCRYGG 1 cut(s) 137
BtsCI GGATG 1 cut(s) 367
Cac8I GCNNGC 2 cut(s) 162, 452
CfoI GCGC 2 cut(s) 160, 245
Cfr10I RCCGGY 1 cut(s) 248
Cfr13I GGNCC 1 cut(s) 422
CseI GACGC 2 cut(s) 142, 438
Csp6I GTAC 1 cut(s) 439
CviAII CATG 1 cut(s) 518
CviQI GTAC 1 cut(s) 439
DdeI CTNAG 3 cut(s) 280, 608, 817
DpnI GATC 7 cut(s) 123, 143, 223, 560, 659, 732, 815
DpnII GATC 7 cut(s) 121, 141, 221, 558, 657, 730, 813
DraI TTTAAA 1 cut(s) 681
Eam1104I CTCTTC 2 cut(s) 183, 703
EarI CTCTTC 2 cut(s) 183, 703
EciI GGCGGA 1 cut(s) 193
Ecl136II GAGCTC 1 cut(s) 491
Eco24I GRGCYC 1 cut(s) 493
Eco31I GGTCTC 1 cut(s) 185
Eco47I GGWCC 1 cut(s) 422
Eco53kI GAGCTC 1 cut(s) 491
Eco57I CTGAAG 1 cut(s) 82
Eco88I CYCGRG 1 cut(s) 165
EcoICRI GAGCTC 1 cut(s) 491
EcoRI GAATTC 1 cut(s) 584
EcoT38I GRGCYC 1 cut(s) 493
FaeI CATG 1 cut(s) 521
FaiI YATR 8 cut(s) 306, 315, 495, 519, 590, 654, 692, 810
FalI AAGNNNNNCTT 2 cut(s) 62, 94
FatI CATG 1 cut(s) 517
Fnu4HI GCNGC 2 cut(s) 360, 567
FokI GGATG 1 cut(s) 354
FriOI GRGCYC 1 cut(s) 493
Fsp4HI GCNGC 2 cut(s) 360, 567
FspBI CTAG 2 cut(s) 119, 705
FspI TGCGCA 1 cut(s) 159
GlaI GCGC 2 cut(s) 159, 244
GluI GCNGC 2 cut(s) 360, 567
HapII CCGG 5 cut(s) 29, 65, 249, 618, 648
HgaI GACGC 2 cut(s) 142, 438
HhaI GCGC 2 cut(s) 160, 245
Hin1I GRCGYC 1 cut(s) 134
Hin1II CATG 1 cut(s) 521
Hin6I GCGC 2 cut(s) 158, 243
HinP1I GCGC 2 cut(s) 158, 243
HindIII AAGCTT 2 cut(s) 213, 448
HinfI GANTC 3 cut(s) 56, 92, 473
HpaII CCGG 5 cut(s) 29, 65, 249, 618, 648
HphI GGTGA 2 cut(s) 18, 54
Hpy166II GTNNAC 1 cut(s) 172
Hpy188I TCNGA 5 cut(s) 132, 563, 611, 794, 824
Hpy188III TCNNGA 2 cut(s) 219, 295
Hpy8I GTNNAC 1 cut(s) 172
Hpy99I CGWCG 3 cut(s) 10, 136, 432
HpyAV CCTTC 2 cut(s) 106, 499
HpyCH4IV ACGT 1 cut(s) 528
HpyCH4V TGCA 1 cut(s) 521
HpyF10VI GCNNNNNNNGC 4 cut(s) 212, 249, 356, 572
HpyF3I CTNAG 3 cut(s) 280, 608, 817
HpySE526I ACGT 1 cut(s) 528
Hsp92I GRCGYC 1 cut(s) 134
Hsp92II CATG 1 cut(s) 521
HspAI GCGC 2 cut(s) 158, 243
Kzo9I GATC 7 cut(s) 121, 141, 221, 558, 657, 730, 813
Lsp1109I GCAGC 1 cut(s) 578
LweI GCATC 1 cut(s) 725
MaeI CTAG 2 cut(s) 119, 705
MaeII ACGT 1 cut(s) 528
MaeIII GTNAC 1 cut(s) 736
MalI GATC 7 cut(s) 123, 143, 223, 560, 659, 732, 815
MboI GATC 7 cut(s) 121, 141, 221, 558, 657, 730, 813
MboII GAAGA 7 cut(s) 34, 70, 190, 200, 299, 346, 720
MfeI CAATTG 1 cut(s) 522
MflI RGATCY 1 cut(s) 813
MhlI GDGCHC 1 cut(s) 493
MluCI AATT 6 cut(s) 522, 551, 584, 742, 798, 805
MlyI GAGTC 2 cut(s) 86, 482
MmeI TCCRAC 1 cut(s) 155
MseI TTAA 3 cut(s) 461, 483, 680
MspI CCGG 5 cut(s) 29, 65, 249, 618, 648
MspR9I CCNGG 1 cut(s) 619
MunI CAATTG 1 cut(s) 522
MvnI CGCG 2 cut(s) 152, 243
MwoI GCNNNNNNNGC 4 cut(s) 212, 249, 356, 572
NciI CCSGG 1 cut(s) 619
NdeII GATC 7 cut(s) 121, 141, 221, 558, 657, 730, 813
NlaIII CATG 1 cut(s) 521
NlaIV GGNNCC 2 cut(s) 12, 646
NsbI TGCGCA 1 cut(s) 159
NspI RCATGY 1 cut(s) 521
PfeI GAWTC 1 cut(s) 56
PkrI GCNGC 2 cut(s) 361, 568
PleI GAGTC 2 cut(s) 86, 481
PpsI GAGTC 2 cut(s) 86, 481
PsiI TTATAA 1 cut(s) 692
Psp124BI GAGCTC 1 cut(s) 493
PspN4I GGNNCC 2 cut(s) 12, 646
PspPI GGNCC 1 cut(s) 422
PsuI RGATCY 1 cut(s) 813
RsaI GTAC 1 cut(s) 440
RsaNI GTAC 1 cut(s) 439
SacI GAGCTC 1 cut(s) 493
SaqAI TTAA 3 cut(s) 461, 483, 680
SatI GCNGC 2 cut(s) 360, 567
Sau3AI GATC 7 cut(s) 121, 141, 221, 558, 657, 730, 813
Sau96I GGNCC 1 cut(s) 422
SchI GAGTC 2 cut(s) 86, 482
ScrFI CCNGG 1 cut(s) 619
SduI GDGCHC 1 cut(s) 493
SetI ASST 6 cut(s) 130, 217, 452, 493, 531, 792
SfaNI GCATC 1 cut(s) 725
SinI GGWCC 1 cut(s) 422
Sse9I AATT 6 cut(s) 522, 551, 584, 742, 798, 805
SsiI CCGC 2 cut(s) 204, 359
SspMI CTAG 2 cut(s) 119, 705
SstI GAGCTC 1 cut(s) 493
StyD4I CCNGG 1 cut(s) 617
TaiI ACGT 1 cut(s) 531
TaqI TCGA 6 cut(s) 144, 186, 210, 220, 660, 733
TaqII GACCGA 1 cut(s) 68
TasI AATT 6 cut(s) 522, 551, 584, 742, 798, 805
TatI WGTACW 1 cut(s) 438
TauI GCSGC 1 cut(s) 362
TfiI GAWTC 1 cut(s) 56
Tru1I TTAA 3 cut(s) 461, 483, 680
Tru9I TTAA 3 cut(s) 461, 483, 680
TseI GCWGC 1 cut(s) 566
TspDTI ATGAA 2 cut(s) 577, 597
TspGWI ACGGA 2 cut(s) 23, 716
VpaK11BI GGWCC 1 cut(s) 422
XapI RAATTY 2 cut(s) 584, 742
XceI RCATGY 1 cut(s) 521
XcmI CCANNNNNNNNNTGG 2 cut(s) 280, 638
XspI CTAG 2 cut(s) 119, 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.