Rroxscaffold_4G00306730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0013300
Physical Location & Seq
Forward (+)
27694526 .. 27700913
6388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00306730.1

Sequence Viewer

Length: 879 bp
ATGGCGACGGAACCAGAAACCTCCTCACCGGAAAAGCCAATCTTCGCGCCGACCGACTCCTTCAGCCACGGCACCCAAACCCTAGAGCAACCTGCAACGCCGTGGATCGACTACGCGATTGAGCAGGCCCGGGTTTACCAGAAAAACATCGAAGAGTCCCTAAACTCCGCCCTCGAAGCTTCTAGATCACGCCTCTCGGAGATTCGGGCCACCGGCTCTGCTCATTTGAGCCAGACCATTGACTCATTGGAAGATGTCAAGTCTAGCTACGCTGATTATGAGGATATTTTACTAGCGAAGATTAAAGAGGGTGCTTCTGTTGCGGCTTCACATCCGGTGATCACTGGTGGAGTTGCTGCTGCTTTGGGGTTTACGGTTCTAAAAGGACCACGACGCTTCTTGTACTACAAAAGCTTGCGCCTTTTCATGAGCGAGGAGGTAAGCATCGATGCTATTAAAGTTACATTCATTCAAATCTCCGTCCTACATTCATTCACGAAGGCACTTAATGGGTTGGTGAATGCCTCGTTTTCTCCTGAACTTGTCGGAATTATTCGTAATAAGATATTGGCTACAATTGAAAAGTCCTTACTTTCTAGAGCTGATGCTAAAAAAAGGGCATCAAATGCTGAAATAGAATTCATACGGGGGAGGAAAAAACTCAGACAAACGGGGAAGCTAATTCAAAGTGCGATTGGAACAGGTTATAAGATTGAAAGACAAGCAAGAGGTTTAAAAGATATTATAGGAGAACTTCCTAGAAGAGAAGCATCTTTGTTCCGGGACCAAGTTACAAAATTGGCTAAAGAGGCAAAGCAAGAAAGGACTGCCTTATCAAAGGAGGTCACAAAAATTAGCAATCATGGGATCTCAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

292

Amino Acids

32.13

Weight (kDa)

9.48

Isoelectric Point (pI)

48.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013300)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45060
fragaria_vesca FvH4_7g10760 FvH4_7g10760
malus_domestica MD07G1087600.v1.1
prunus_persica Prupe.2G135800_v2.0.a1
pyrus_communis pycom07g07010
rosa_chinensis RchiOBHm_Chr1g0348701
rosa_laevigata RLG00000028629
rosa_multiflora Rmu_sc0001674.1_g000007
rosa_roxburghii Rroxscaffold_4G00306730
rosa_rugosa Rorug01G0196800
rosa_samantha Rh1AG025500 Rh1AG214300 Rh1BG180900 Rh1CG023900 Rh1CG199000 Rh1DG210900
rosa_wichuraiana Rw1G018160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 708
Acc36I ACCTGC 1 cut(s) 100
AccB1I GGYRCC 1 cut(s) 71
AccII CGCG 2 cut(s) 47, 116
AciI CCGC 2 cut(s) 168, 323
AclWI GGATC 2 cut(s) 113, 875
AcsI RAATTY 1 cut(s) 638
AcuI CTGAAG 1 cut(s) 46
AfaI GTAC 1 cut(s) 404
AgsI TTSAA 4 cut(s) 473, 581, 686, 716
AluBI AGCT 5 cut(s) 179, 267, 414, 602, 679
AluI AGCT 5 cut(s) 179, 267, 414, 602, 679
AlwI GGATC 2 cut(s) 113, 875
Ama87I CYCGRG 1 cut(s) 129
AoxI GGCC 2 cut(s) 126, 207
ApeKI GCWGC 2 cut(s) 356, 359
ApoI RAATTY 1 cut(s) 638
AspLEI GCGC 2 cut(s) 49, 420
AspS9I GGNCC 4 cut(s) 127, 207, 386, 784
AsuC2I CCSGG 3 cut(s) 130, 131, 782
AsuHPI GGTGA 3 cut(s) 18, 349, 529
AvaI CYCGRG 1 cut(s) 129
AvaII GGWCC 2 cut(s) 386, 784
BanI GGYRCC 1 cut(s) 71
BbvI GCAGC 2 cut(s) 343, 346
BceAI ACGGC 2 cut(s) 85, 85
BclI TGATCA 1 cut(s) 339
BcnI CCSGG 3 cut(s) 130, 131, 782
BfaI CTAG 6 cut(s) 83, 183, 264, 293, 597, 759
BfuAI ACCTGC 1 cut(s) 100
BisI GCNGC 3 cut(s) 324, 357, 360
BlsI GCNGC 3 cut(s) 325, 358, 361
Bme1390I CCNGG 3 cut(s) 130, 131, 782
Bme18I GGWCC 2 cut(s) 386, 784
BmeT110I CYCGRG 1 cut(s) 129
BmgT120I GGNCC 4 cut(s) 127, 207, 386, 784
BmiI GGNNCC 3 cut(s) 12, 73, 785
BmrFI CCNGG 3 cut(s) 130, 131, 782
BmsI GCATC 5 cut(s) 439, 453, 595, 629, 779
BpuMI CCSGG 3 cut(s) 130, 131, 782
Bsa29I ATCGAT 1 cut(s) 447
BsaJI CCNNGG 3 cut(s) 67, 101, 129
BsaWI WCCGGW 2 cut(s) 28, 334
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 349
BseCI ATCGAT 1 cut(s) 447
BseDI CCNNGG 3 cut(s) 67, 101, 129
BseGI GGATG 1 cut(s) 331
BseMII CTCAG 1 cut(s) 676
BseNI ACTGG 1 cut(s) 349
BseRI GAGGAG 2 cut(s) 13, 449
BseXI GCAGC 2 cut(s) 343, 346
Bsh1236I CGCG 2 cut(s) 47, 116
Bsh1285I CGRYCG 1 cut(s) 54
BshFI GGCC 2 cut(s) 128, 209
BshNI GGYRCC 1 cut(s) 71
BshVI ATCGAT 1 cut(s) 447
BsiEI CGRYCG 1 cut(s) 54
BsiHKCI CYCGRG 1 cut(s) 129
BsiSI CCGG 5 cut(s) 29, 130, 213, 335, 781
BslFI GGGAC 2 cut(s) 142, 797
BsmFI GGGAC 2 cut(s) 142, 797
BsmI GAATGC 1 cut(s) 526
BsnI GGCC 2 cut(s) 128, 209
BsoBI CYCGRG 1 cut(s) 129
Bsp143I GATC 4 cut(s) 105, 185, 339, 867
BspACI CCGC 2 cut(s) 168, 323
BspANI GGCC 2 cut(s) 128, 209
BspCNI CTCAG 1 cut(s) 675
BspDI ATCGAT 1 cut(s) 447
BspFNI CGCG 2 cut(s) 47, 116
BspHI TCATGA 1 cut(s) 426
BspLI GGNNCC 3 cut(s) 12, 73, 785
BspMI ACCTGC 1 cut(s) 100
BspPI GGATC 2 cut(s) 113, 875
BspT107I GGYRCC 1 cut(s) 71
BsrFI RCCGGY 1 cut(s) 212
BsrI ACTGG 1 cut(s) 349
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 3 cut(s) 67, 101, 129
BssMI GATC 4 cut(s) 105, 185, 339, 867
Bst4CI ACNGT 1 cut(s) 376
Bst6I CTCTTC 2 cut(s) 147, 757
BstAPI GCANNNNNTGC 1 cut(s) 626
BstC8I GCNNGC 2 cut(s) 126, 416
BstDEI CTNAG 2 cut(s) 662, 871
BstDSI CCRYGG 2 cut(s) 67, 101
BstF5I GGATG 1 cut(s) 331
BstFNI CGCG 2 cut(s) 47, 116
BstHHI GCGC 2 cut(s) 49, 420
BstKTI GATC 4 cut(s) 108, 188, 342, 870
BstMBI GATC 4 cut(s) 105, 185, 339, 867
BstMCI CGRYCG 1 cut(s) 54
BstMWI GCNNNNNNNGC 4 cut(s) 176, 320, 626, 809
BstSCI CCNGG 3 cut(s) 128, 129, 780
BstUI CGCG 2 cut(s) 47, 116
BstV1I GCAGC 2 cut(s) 343, 346
BstX2I RGATCY 1 cut(s) 867
BstYI RGATCY 1 cut(s) 867
Bsu15I ATCGAT 1 cut(s) 447
BsuRI GGCC 2 cut(s) 128, 209
BsuTUI ATCGAT 1 cut(s) 447
BtgI CCRYGG 2 cut(s) 67, 101
BtsCI GGATG 1 cut(s) 331
BtsIMutI CAGTG 1 cut(s) 342
BveI ACCTGC 1 cut(s) 100
Cac8I GCNNGC 2 cut(s) 126, 416
CciI TCATGA 1 cut(s) 426
CfoI GCGC 2 cut(s) 49, 420
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 4 cut(s) 127, 207, 386, 784
Cfr9I CCCGGG 1 cut(s) 129
ClaI ATCGAT 1 cut(s) 447
CseI GACGC 1 cut(s) 402
Csp6I GTAC 1 cut(s) 403
CviAII CATG 2 cut(s) 427, 863
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 2 cut(s) 662, 871
DpnI GATC 4 cut(s) 107, 187, 341, 869
DpnII GATC 4 cut(s) 105, 185, 339, 867
DraI TTTAAA 1 cut(s) 735
Eam1104I CTCTTC 2 cut(s) 147, 757
EarI CTCTTC 2 cut(s) 147, 757
EciI GGCGGA 1 cut(s) 157
Eco47I GGWCC 2 cut(s) 386, 784
Eco57I CTGAAG 1 cut(s) 46
Eco88I CYCGRG 1 cut(s) 129
EcoRI GAATTC 1 cut(s) 638
FaeI CATG 2 cut(s) 430, 866
FaiI YATR 6 cut(s) 279, 428, 644, 708, 746, 864
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FaqI GGGAC 2 cut(s) 142, 797
FatI CATG 2 cut(s) 426, 862
FbaI TGATCA 1 cut(s) 339
Fnu4HI GCNGC 3 cut(s) 324, 357, 360
FokI GGATG 1 cut(s) 318
Fsp4HI GCNGC 3 cut(s) 324, 357, 360
FspBI CTAG 6 cut(s) 83, 183, 264, 293, 597, 759
GlaI GCGC 2 cut(s) 48, 419
GluI GCNGC 3 cut(s) 324, 357, 360
HaeIII GGCC 2 cut(s) 128, 209
HapII CCGG 5 cut(s) 29, 130, 213, 335, 781
HgaI GACGC 1 cut(s) 402
HhaI GCGC 2 cut(s) 49, 420
Hin1II CATG 2 cut(s) 430, 866
Hin6I GCGC 2 cut(s) 47, 418
HinP1I GCGC 2 cut(s) 47, 418
HindIII AAGCTT 2 cut(s) 177, 412
HinfI GANTC 4 cut(s) 56, 155, 202, 242
HpaII CCGG 5 cut(s) 29, 130, 213, 335, 781
HphI GGTGA 3 cut(s) 18, 349, 529
Hpy166II GTNNAC 2 cut(s) 136, 372
Hpy188I TCNGA 4 cut(s) 199, 548, 665, 878
Hpy188III TCNNGA 5 cut(s) 183, 427, 496, 536, 597
Hpy8I GTNNAC 2 cut(s) 136, 372
Hpy99I CGWCG 2 cut(s) 10, 396
HpyAV CCTTC 2 cut(s) 70, 493
HpyCH4III ACNGT 1 cut(s) 376
HpyCH4V TGCA 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 320, 626, 809
HpyF3I CTNAG 2 cut(s) 662, 871
Hsp92II CATG 2 cut(s) 430, 866
HspAI GCGC 2 cut(s) 47, 418
Ksp22I TGATCA 1 cut(s) 339
Kzo9I GATC 4 cut(s) 105, 185, 339, 867
Lsp1109I GCAGC 2 cut(s) 343, 346
LweI GCATC 5 cut(s) 439, 453, 595, 629, 779
MaeI CTAG 6 cut(s) 83, 183, 264, 293, 597, 759
MaeIII GTNAC 3 cut(s) 460, 790, 844
MalI GATC 4 cut(s) 107, 187, 341, 869
MboI GATC 4 cut(s) 105, 185, 339, 867
MboII GAAGA 5 cut(s) 34, 164, 263, 310, 774
MfeI CAATTG 1 cut(s) 576
MflI RGATCY 1 cut(s) 867
MluCI AATT 6 cut(s) 549, 576, 638, 681, 797, 852
MlyI GAGTC 3 cut(s) 50, 164, 236
MmeI TCCRAC 1 cut(s) 526
MseI TTAA 4 cut(s) 303, 456, 507, 734
MspI CCGG 5 cut(s) 29, 130, 213, 335, 781
MspR9I CCNGG 3 cut(s) 130, 131, 782
MunI CAATTG 1 cut(s) 576
Mva1269I GAATGC 1 cut(s) 526
MvnI CGCG 2 cut(s) 47, 116
MwoI GCNNNNNNNGC 4 cut(s) 176, 320, 626, 809
NciI CCSGG 3 cut(s) 130, 131, 782
NdeII GATC 4 cut(s) 105, 185, 339, 867
NlaIII CATG 2 cut(s) 430, 866
NlaIV GGNNCC 3 cut(s) 12, 73, 785
NmuCI GTSAC 1 cut(s) 844
PagI TCATGA 1 cut(s) 426
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PctI GAATGC 1 cut(s) 526
PfeI GAWTC 1 cut(s) 202
PfoI TCCNGGA 1 cut(s) 780
PkrI GCNGC 3 cut(s) 325, 358, 361
PleI GAGTC 3 cut(s) 50, 163, 236
PpsI GAGTC 3 cut(s) 50, 163, 236
PsiI TTATAA 1 cut(s) 708
PspN4I GGNNCC 3 cut(s) 12, 73, 785
PspPI GGNCC 4 cut(s) 127, 207, 386, 784
PsuI RGATCY 1 cut(s) 867
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
SaqAI TTAA 4 cut(s) 303, 456, 507, 734
SatI GCNGC 3 cut(s) 324, 357, 360
Sau3AI GATC 4 cut(s) 105, 185, 339, 867
Sau96I GGNCC 4 cut(s) 127, 207, 386, 784
SchI GAGTC 3 cut(s) 50, 164, 236
ScrFI CCNGG 3 cut(s) 130, 131, 782
SfaNI GCATC 5 cut(s) 439, 453, 595, 629, 779
SinI GGWCC 2 cut(s) 386, 784
SmaI CCCGGG 1 cut(s) 131
Sse9I AATT 6 cut(s) 549, 576, 638, 681, 797, 852
SsiI CCGC 2 cut(s) 168, 323
SspMI CTAG 6 cut(s) 83, 183, 264, 293, 597, 759
StyD4I CCNGG 3 cut(s) 128, 129, 780
TaaI ACNGT 1 cut(s) 376
TaqI TCGA 4 cut(s) 108, 150, 174, 447
TaqII GACCGA 1 cut(s) 68
TasI AATT 6 cut(s) 549, 576, 638, 681, 797, 852
TatI WGTACW 1 cut(s) 402
TauI GCSGC 1 cut(s) 326
TfiI GAWTC 1 cut(s) 202
Tru1I TTAA 4 cut(s) 303, 456, 507, 734
Tru9I TTAA 4 cut(s) 303, 456, 507, 734
TscAI CASTG 1 cut(s) 349
TseFI GTSAC 1 cut(s) 844
TseI GCWGC 2 cut(s) 356, 359
Tsp45I GTSAC 1 cut(s) 844
TspDTI ATGAA 4 cut(s) 415, 457, 480, 631
TspGWI ACGGA 2 cut(s) 23, 469
TspMI CCCGGG 1 cut(s) 129
TspRI CASTG 1 cut(s) 349
VpaK11BI GGWCC 2 cut(s) 386, 784
XapI RAATTY 1 cut(s) 638
XbaI TCTAGA 2 cut(s) 182, 596
XcmI CCANNNNNNNNNTGG 1 cut(s) 244
XmaI CCCGGG 1 cut(s) 129
XspI CTAG 6 cut(s) 83, 183, 264, 293, 597, 759
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.