Rh1DG210900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0013300
Physical Location & Seq
Reverse (-)
41005973 .. 41011295
5323 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG210900.1

Sequence Viewer

Length: 579 bp
ATGGCGACGGAACCAGAAACCTCCTCACCGGAAAAGCCAATCTTCGCGCCGACCGACTCCTTCAGCCACAGCACCCAAACCCTAGAGCAACCTGCAACGCCGTGGATCGACTACGCGATTGAGCAGGCTCGGGTTTACCAGAAAAACATCGAAGAGACCCTAAACTCCGCCCTCGAAGCTTCTAGATCACGCCTCTCCGAGATTCGGGCCACCGGCTCTGCTCATTTGAGCCAGACCATTGACTCATTGGAAGATGTCAAGTCTAGCTATGCTGATTATGAGGATATTTTACTTGCGAAGATTAAAGAGGGTGCTTCTGTTGCGGCTTCACATCCGGTGATTACTGGTGGAGTTGCTGCTGCTTTGGGGTTTACGGTTCTAAAAGGACCACGTCGCTTCTTGTACTACAAAAGCTTGCGCCTTTTCATGAGCGAGGAGTCCTTACTTTCTAGAGCTGATGCTAAAGTGAAGGAGTTGCGACATTCAATTGATGTTCTAAAGGCTGAAAGTGAACAATTAGAGGTAATCTATCTCTCTCTCTCTCTCTCATTTTTAATCTCGATTGATGATCGTGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

21.24

Weight (kDa)

4.99

Isoelectric Point (pI)

57.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013300)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45060
fragaria_vesca FvH4_7g10760 FvH4_7g10760
malus_domestica MD07G1087600.v1.1
prunus_persica Prupe.2G135800_v2.0.a1
pyrus_communis pycom07g07010
rosa_chinensis RchiOBHm_Chr1g0348701
rosa_laevigata RLG00000028629
rosa_multiflora Rmu_sc0001674.1_g000007
rosa_roxburghii Rroxscaffold_4G00306730
rosa_rugosa Rorug01G0196800
rosa_samantha Rh1AG025500 Rh1AG214300 Rh1BG180900 Rh1CG023900 Rh1CG199000 Rh1DG210900
rosa_wichuraiana Rw1G018160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 100
AccII CGCG 2 cut(s) 47, 116
AciI CCGC 2 cut(s) 168, 323
AclWI GGATC 1 cut(s) 113
AcuI CTGAAG 1 cut(s) 46
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 1 cut(s) 204
AgsI TTSAA 1 cut(s) 486
AjiI CACGTC 1 cut(s) 392
AluBI AGCT 4 cut(s) 179, 267, 414, 455
AluI AGCT 4 cut(s) 179, 267, 414, 455
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 1 cut(s) 113
Ama87I CYCGRG 1 cut(s) 129
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 2 cut(s) 356, 359
AspLEI GCGC 2 cut(s) 49, 420
AspS9I GGNCC 2 cut(s) 207, 386
AsuHPI GGTGA 2 cut(s) 18, 349
AvaI CYCGRG 1 cut(s) 129
AvaII GGWCC 1 cut(s) 386
BbvI GCAGC 2 cut(s) 343, 346
BceAI ACGGC 1 cut(s) 85
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 4 cut(s) 83, 183, 264, 450
BfuAI ACCTGC 1 cut(s) 100
BisI GCNGC 3 cut(s) 324, 357, 360
BlsI GCNGC 3 cut(s) 325, 358, 361
Bme18I GGWCC 1 cut(s) 386
BmeT110I CYCGRG 1 cut(s) 129
BmgBI CACGTC 1 cut(s) 392
BmgT120I GGNCC 2 cut(s) 207, 386
BmiI GGNNCC 1 cut(s) 12
BmsI GCATC 1 cut(s) 448
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 101
BsaWI WCCGGW 2 cut(s) 28, 334
Bsc4I CCNNNNNNNGG 1 cut(s) 204
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 349
BseDI CCNNGG 1 cut(s) 101
BseGI GGATG 1 cut(s) 331
BseLI CCNNNNNNNGG 1 cut(s) 204
BseNI ACTGG 1 cut(s) 349
BseRI GAGGAG 2 cut(s) 13, 449
BseXI GCAGC 2 cut(s) 343, 346
Bsh1236I CGCG 2 cut(s) 47, 116
Bsh1285I CGRYCG 1 cut(s) 54
BshFI GGCC 1 cut(s) 209
BsiEI CGRYCG 1 cut(s) 54
BsiHKCI CYCGRG 1 cut(s) 129
BsiSI CCGG 3 cut(s) 29, 213, 335
BslI CCNNNNNNNGG 1 cut(s) 204
BsmAI GTCTC 1 cut(s) 149
BsnI GGCC 1 cut(s) 209
Bso31I GGTCTC 1 cut(s) 149
BsoBI CYCGRG 1 cut(s) 129
Bsp143I GATC 3 cut(s) 105, 185, 568
BspACI CCGC 2 cut(s) 168, 323
BspANI GGCC 1 cut(s) 209
BspFNI CGCG 2 cut(s) 47, 116
BspHI TCATGA 1 cut(s) 426
BspLI GGNNCC 1 cut(s) 12
BspMI ACCTGC 1 cut(s) 100
BspPI GGATC 1 cut(s) 113
BspTNI GGTCTC 1 cut(s) 149
BsrFI RCCGGY 1 cut(s) 212
BsrI ACTGG 1 cut(s) 349
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 101
BssMI GATC 3 cut(s) 105, 185, 568
Bst4CI ACNGT 1 cut(s) 376
Bst6I CTCTTC 1 cut(s) 147
BstC8I GCNNGC 2 cut(s) 126, 416
BstDSI CCRYGG 1 cut(s) 101
BstF5I GGATG 1 cut(s) 331
BstFNI CGCG 2 cut(s) 47, 116
BstHHI GCGC 2 cut(s) 49, 420
BstKTI GATC 3 cut(s) 108, 188, 571
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 3 cut(s) 105, 185, 568
BstMCI CGRYCG 1 cut(s) 54
BstMWI GCNNNNNNNGC 2 cut(s) 176, 320
BstUI CGCG 2 cut(s) 47, 116
BstV1I GCAGC 2 cut(s) 343, 346
BsuRI GGCC 1 cut(s) 209
BtgI CCRYGG 1 cut(s) 101
BtrI CACGTC 1 cut(s) 392
BtsCI GGATG 1 cut(s) 331
BveI ACCTGC 1 cut(s) 100
Cac8I GCNNGC 2 cut(s) 126, 416
CciI TCATGA 1 cut(s) 426
CfoI GCGC 2 cut(s) 49, 420
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 2 cut(s) 207, 386
Csp6I GTAC 1 cut(s) 403
CviAII CATG 1 cut(s) 427
CviQI GTAC 1 cut(s) 403
DpnI GATC 3 cut(s) 107, 187, 570
DpnII GATC 3 cut(s) 105, 185, 568
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
EciI GGCGGA 1 cut(s) 157
Eco31I GGTCTC 1 cut(s) 149
Eco47I GGWCC 1 cut(s) 386
Eco57I CTGAAG 1 cut(s) 46
Eco88I CYCGRG 1 cut(s) 129
FaeI CATG 1 cut(s) 430
FaiI YATR 3 cut(s) 270, 279, 428
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FatI CATG 1 cut(s) 426
Fnu4HI GCNGC 3 cut(s) 324, 357, 360
FokI GGATG 1 cut(s) 318
Fsp4HI GCNGC 3 cut(s) 324, 357, 360
FspBI CTAG 4 cut(s) 83, 183, 264, 450
GlaI GCGC 2 cut(s) 48, 419
GluI GCNGC 3 cut(s) 324, 357, 360
HaeIII GGCC 1 cut(s) 209
HapII CCGG 3 cut(s) 29, 213, 335
HhaI GCGC 2 cut(s) 49, 420
Hin1II CATG 1 cut(s) 430
Hin6I GCGC 2 cut(s) 47, 418
HinP1I GCGC 2 cut(s) 47, 418
HindIII AAGCTT 2 cut(s) 177, 412
HinfI GANTC 4 cut(s) 56, 202, 242, 437
HpaII CCGG 3 cut(s) 29, 213, 335
HphI GGTGA 2 cut(s) 18, 349
Hpy166II GTNNAC 3 cut(s) 136, 372, 512
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 5 cut(s) 183, 427, 450, 559, 572
Hpy8I GTNNAC 3 cut(s) 136, 372, 512
Hpy99I CGWCG 2 cut(s) 10, 396
HpyAV CCTTC 2 cut(s) 70, 463
HpyCH4III ACNGT 1 cut(s) 376
HpyCH4IV ACGT 1 cut(s) 391
HpyCH4V TGCA 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 320
HpySE526I ACGT 1 cut(s) 391
Hsp92II CATG 1 cut(s) 430
HspAI GCGC 2 cut(s) 47, 418
Kzo9I GATC 3 cut(s) 105, 185, 568
LpnPI CCDG 9 cut(s) 27, 42, 105, 110, 152, 226, 245, 330, 348
Lsp1109I GCAGC 2 cut(s) 343, 346
LweI GCATC 1 cut(s) 448
MaeI CTAG 4 cut(s) 83, 183, 264, 450
MaeII ACGT 1 cut(s) 391
MaeIII GTNAC 1 cut(s) 572
MalI GATC 3 cut(s) 107, 187, 570
MboI GATC 3 cut(s) 105, 185, 568
MboII GAAGA 4 cut(s) 34, 164, 263, 310
MfeI CAATTG 1 cut(s) 486
MluCI AATT 2 cut(s) 486, 515
MlyI GAGTC 3 cut(s) 50, 236, 446
MnlI CCTC 8 cut(s) 31, 34, 182, 203, 274, 301, 427, 514
MseI TTAA 2 cut(s) 303, 554
MspI CCGG 3 cut(s) 29, 213, 335
MunI CAATTG 1 cut(s) 486
MvnI CGCG 2 cut(s) 47, 116
MwoI GCNNNNNNNGC 2 cut(s) 176, 320
NdeII GATC 3 cut(s) 105, 185, 568
NlaIII CATG 1 cut(s) 430
NlaIV GGNNCC 1 cut(s) 12
NmuCI GTSAC 1 cut(s) 572
PagI TCATGA 1 cut(s) 426
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PfeI GAWTC 1 cut(s) 202
PflFI GACNNNGTC 1 cut(s) 390
PkrI GCNGC 3 cut(s) 325, 358, 361
PleI GAGTC 3 cut(s) 50, 236, 445
PpsI GAGTC 3 cut(s) 50, 236, 445
PspN4I GGNNCC 1 cut(s) 12
PspPI GGNCC 2 cut(s) 207, 386
PsyI GACNNNGTC 1 cut(s) 390
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
SaqAI TTAA 2 cut(s) 303, 554
SatI GCNGC 3 cut(s) 324, 357, 360
Sau3AI GATC 3 cut(s) 105, 185, 568
Sau96I GGNCC 2 cut(s) 207, 386
SchI GAGTC 3 cut(s) 50, 236, 446
SetI ASST 8 cut(s) 23, 94, 181, 269, 394, 416, 457, 525
SfaNI GCATC 1 cut(s) 448
SinI GGWCC 1 cut(s) 386
Sse9I AATT 2 cut(s) 486, 515
SsiI CCGC 2 cut(s) 168, 323
SspMI CTAG 4 cut(s) 83, 183, 264, 450
TaaI ACNGT 1 cut(s) 376
TaiI ACGT 1 cut(s) 394
TaqI TCGA 4 cut(s) 108, 150, 174, 560
TaqII GACCGA 1 cut(s) 68
TasI AATT 2 cut(s) 486, 515
TatI WGTACW 1 cut(s) 402
TauI GCSGC 1 cut(s) 326
TfiI GAWTC 1 cut(s) 202
Tru1I TTAA 2 cut(s) 303, 554
Tru9I TTAA 2 cut(s) 303, 554
TseFI GTSAC 1 cut(s) 572
TseI GCWGC 2 cut(s) 356, 359
Tsp45I GTSAC 1 cut(s) 572
TspDTI ATGAA 1 cut(s) 415
TspGWI ACGGA 1 cut(s) 23
Tth111I GACNNNGTC 1 cut(s) 390
VpaK11BI GGWCC 1 cut(s) 386
XbaI TCTAGA 2 cut(s) 182, 449
XcmI CCANNNNNNNNNTGG 1 cut(s) 244
XspI CTAG 4 cut(s) 83, 183, 264, 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.