Rh1AG025500

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0013300
Physical Location & Seq
Forward (+)
4647991 .. 4678643
30653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG025500.1

Sequence Viewer

Length: 366 bp
ATGGACGACGTCGTGCATTCATCGGCGCCTCCAGCTTTGCTCTCCTCGGTGGACACCTCGAGTTCGTTGGCTGATTCCACAACACCAGATTCAACTCTCCTTTGCAAATGTAGTGTGAAAGCAGATGGAAAGCTACAACTCTACAAGGTTGAACTAATCCAACTGCGTAATATGGTGGAGGATATATCCATCATTAATAAGAATCTGGACCTGAGACTGATGTTAAACATGAAGAGAGTCTTAACAACTCAGACTGATGATGAGATGCAAAGCATTAAGGATCTGGTTGATTCAGCGATTAGTATTAAAAAAGTCTTCTCGTTTTTCTCGGGCTGTCTCGTATCCTCCTTTTCCATATCTCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.26

Weight (kDa)

4.95

Isoelectric Point (pI)

34.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7903 PF25475 23 - 100 3e-32 Domain of unknown function (DUF7903)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013300)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45060
fragaria_vesca FvH4_7g10760 FvH4_7g10760
malus_domestica MD07G1087600.v1.1
prunus_persica Prupe.2G135800_v2.0.a1
pyrus_communis pycom07g07010
rosa_chinensis RchiOBHm_Chr1g0348701
rosa_laevigata RLG00000028629
rosa_multiflora Rmu_sc0001674.1_g000007
rosa_roxburghii Rroxscaffold_4G00306730
rosa_rugosa Rorug01G0196800
rosa_samantha Rh1AG025500 Rh1AG214300 Rh1BG180900 Rh1CG023900 Rh1CG199000 Rh1DG210900
rosa_wichuraiana Rw1G018160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 12
AccB1I GGYRCC 1 cut(s) 25
AclWI GGATC 1 cut(s) 288
AcyI GRCGYC 2 cut(s) 9, 26
AgsI TTSAA 2 cut(s) 93, 152
AluBI AGCT 2 cut(s) 35, 133
AluI AGCT 2 cut(s) 35, 133
Alw26I GTCTC 2 cut(s) 208, 341
AlwI GGATC 1 cut(s) 288
Ama87I CYCGRG 2 cut(s) 58, 328
AseI ATTAAT 1 cut(s) 195
AspLEI GCGC 1 cut(s) 28
AspS9I GGNCC 1 cut(s) 208
AvaI CYCGRG 2 cut(s) 58, 328
AvaII GGWCC 1 cut(s) 208
BanI GGYRCC 1 cut(s) 25
BbsI GAAGAC 1 cut(s) 307
BccI CCATC 2 cut(s) 119, 197
BciVI GTATCC 1 cut(s) 352
BcoDI GTCTC 2 cut(s) 208, 341
BfoI RGCGCY 1 cut(s) 29
BfuI GTATCC 1 cut(s) 352
Bme18I GGWCC 1 cut(s) 208
BmeT110I CYCGRG 2 cut(s) 58, 328
BmgT120I GGNCC 1 cut(s) 208
BmiI GGNNCC 1 cut(s) 27
BmsI GCATC 1 cut(s) 255
BpiI GAAGAC 1 cut(s) 307
BpmI CTGGAG 1 cut(s) 15
BsaHI GRCGYC 2 cut(s) 9, 26
BsaJI CCNNGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 45
BseMII CTCAG 2 cut(s) 203, 263
BseRI GAGGAG 1 cut(s) 34
BshNI GGYRCC 1 cut(s) 25
BsiHKCI CYCGRG 2 cut(s) 58, 328
BsmAI GTCTC 2 cut(s) 208, 341
BsmI GAATGC 1 cut(s) 16
BsoBI CYCGRG 2 cut(s) 58, 328
Bsp143I GATC 1 cut(s) 280
BspCNI CTCAG 2 cut(s) 204, 262
BspLI GGNNCC 1 cut(s) 27
BspPI GGATC 1 cut(s) 288
BspT107I GGYRCC 1 cut(s) 25
BssECI CCNNGG 1 cut(s) 45
BssMI GATC 1 cut(s) 280
BssNI GRCGYC 2 cut(s) 9, 26
Bst6I CTCTTC 1 cut(s) 227
BstACI GRCGYC 2 cut(s) 9, 26
BstDEI CTNAG 2 cut(s) 212, 249
BstH2I RGCGCY 1 cut(s) 29
BstHHI GCGC 1 cut(s) 28
BstKTI GATC 1 cut(s) 283
BstMAI GTCTC 2 cut(s) 208, 341
BstMBI GATC 1 cut(s) 280
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstV2I GAAGAC 1 cut(s) 307
BstX2I RGATCY 1 cut(s) 280
BstYI RGATCY 1 cut(s) 280
BsuI GTATCC 1 cut(s) 352
CfoI GCGC 1 cut(s) 28
Cfr13I GGNCC 1 cut(s) 208
CviAII CATG 1 cut(s) 229
CviJI RGCY 4 cut(s) 35, 71, 133, 333
CviKI_1 RGCY 4 cut(s) 35, 71, 133, 333
DdeI CTNAG 2 cut(s) 212, 249
DinI GGCGCC 1 cut(s) 27
DpnI GATC 1 cut(s) 282
DpnII GATC 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
Eco47I GGWCC 1 cut(s) 208
Eco88I CYCGRG 2 cut(s) 58, 328
EgeI GGCGCC 1 cut(s) 27
EheI GGCGCC 1 cut(s) 27
FaeI CATG 1 cut(s) 232
FaiI YATR 4 cut(s) 173, 185, 230, 356
FalI AAGNNNNNCTT 2 cut(s) 224, 256
FatI CATG 1 cut(s) 228
GlaI GCGC 1 cut(s) 27
GsuI CTGGAG 1 cut(s) 15
HaeII RGCGCY 1 cut(s) 29
HhaI GCGC 1 cut(s) 28
Hin1I GRCGYC 2 cut(s) 9, 26
Hin1II CATG 1 cut(s) 232
Hin6I GCGC 1 cut(s) 26
HinP1I GCGC 1 cut(s) 26
HinfI GANTC 5 cut(s) 74, 89, 202, 237, 290
Hpy166II GTNNAC 1 cut(s) 52
Hpy188I TCNGA 1 cut(s) 252
Hpy188III TCNNGA 1 cut(s) 206
Hpy8I GTNNAC 1 cut(s) 52
Hpy99I CGWCG 2 cut(s) 11, 14
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 3 cut(s) 16, 105, 268
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpyF3I CTNAG 2 cut(s) 212, 249
HpySE526I ACGT 1 cut(s) 9
Hsp92I GRCGYC 2 cut(s) 9, 26
Hsp92II CATG 1 cut(s) 232
HspAI GCGC 1 cut(s) 26
KasI GGCGCC 1 cut(s) 25
Kzo9I GATC 1 cut(s) 280
LpnPI CCDG 5 cut(s) 45, 99, 191, 224, 269
LweI GCATC 1 cut(s) 255
MaeII ACGT 1 cut(s) 9
MalI GATC 1 cut(s) 282
MboI GATC 1 cut(s) 280
MboII GAAGA 2 cut(s) 244, 307
MflI RGATCY 1 cut(s) 280
Mly113I GGCGCC 1 cut(s) 26
MlyI GAGTC 1 cut(s) 246
MmeI TCCRAC 1 cut(s) 184
MnlI CCTC 5 cut(s) 39, 55, 67, 172, 355
MseI TTAA 5 cut(s) 195, 224, 242, 276, 306
Mva1269I GAATGC 1 cut(s) 16
MwoI GCNNNNNNNGC 1 cut(s) 32
NarI GGCGCC 1 cut(s) 26
NdeII GATC 1 cut(s) 280
NlaIII CATG 1 cut(s) 232
NlaIV GGNNCC 1 cut(s) 27
PaeR7I CTCGAG 1 cut(s) 58
PctI GAATGC 1 cut(s) 16
PfeI GAWTC 4 cut(s) 74, 89, 202, 290
PflFI GACNNNGTC 1 cut(s) 8
PleI GAGTC 1 cut(s) 245
PluTI GGCGCC 1 cut(s) 29
PpsI GAGTC 1 cut(s) 245
PshBI ATTAAT 1 cut(s) 195
PspN4I GGNNCC 1 cut(s) 27
PspPI GGNCC 1 cut(s) 208
PspXI VCTCGAGB 1 cut(s) 58
PsuI RGATCY 1 cut(s) 280
PsyI GACNNNGTC 1 cut(s) 8
SaqAI TTAA 5 cut(s) 195, 224, 242, 276, 306
Sau3AI GATC 1 cut(s) 280
Sau96I GGNCC 1 cut(s) 208
SchI GAGTC 1 cut(s) 246
SetI ASST 6 cut(s) 12, 37, 59, 135, 150, 213
SfaNI GCATC 1 cut(s) 255
SfoI GGCGCC 1 cut(s) 27
Sfr274I CTCGAG 1 cut(s) 58
SinI GGWCC 1 cut(s) 208
SlaI CTCGAG 1 cut(s) 58
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
SspDI GGCGCC 1 cut(s) 25
TaiI ACGT 1 cut(s) 12
TaqI TCGA 1 cut(s) 59
TfiI GAWTC 4 cut(s) 74, 89, 202, 290
Tru1I TTAA 5 cut(s) 195, 224, 242, 276, 306
Tru9I TTAA 5 cut(s) 195, 224, 242, 276, 306
TspDTI ATGAA 2 cut(s) 9, 245
Tth111I GACNNNGTC 1 cut(s) 8
VpaK11BI GGWCC 1 cut(s) 208
VspI ATTAAT 1 cut(s) 195
XhoI CTCGAG 1 cut(s) 58
ZraI GACGTC 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.