Rmu_sc0001674.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001674.1
OG0013300
Physical Location & Seq
Reverse (-)
26012 .. 30574
4563 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001674.1_g000007.1.cds

Sequence Viewer

Length: 759 bp
atggcgacggaaccagaaacctcctcaccggaaaagccaatcttcgcgctgaccgactccttcagccacggaacccaaaccctagagcaacctgcaacgccgtggatcgactacgcgattgagcaggctcgggtttaccagaaaaacatcgaagagaccctaaactccgccctcgaagcttctagatcacgcctctccgagattcgggccaccggctctgctcatttgagccagaccattgactcattggaagatgtcaagtctagctatgctgattatgaggatattttacttgtgaagattaaagagggtgcttctgttgccgcttcacatccggtgattactggtggagttgctgctgctttggggtttacggttctaaaaggaccacgacgcttcttgtactacaaaagcttgcgccttttcatgagcgaggagtccttactttctagagctgatgctaaagtgaaggagttgcgacattcaattgataagagggcatcaaatgctgaaaaagaattcatacgggggaggaaaaaactcagacaaacggggaagctaattcaaagtgcgattggaacaggttataagattgaaagacaagcaagaggtttaaaagatattataggagaacttcctagaagtgaagcatctatgttccgggaccaagttacaaaattggctaaagaggcaaagcaagaaaggactgccttatcaaaggaggtcacaaaaattagcaatcatgggatctcagtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

252

Amino Acids

27.94

Weight (kDa)

9.33

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013300)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45060
fragaria_vesca FvH4_7g10760 FvH4_7g10760
malus_domestica MD07G1087600.v1.1
prunus_persica Prupe.2G135800_v2.0.a1
pyrus_communis pycom07g07010
rosa_chinensis RchiOBHm_Chr1g0348701
rosa_laevigata RLG00000028629
rosa_multiflora Rmu_sc0001674.1_g000007
rosa_roxburghii Rroxscaffold_4G00306730
rosa_rugosa Rorug01G0196800
rosa_samantha Rh1AG025500 Rh1AG214300 Rh1BG180900 Rh1CG023900 Rh1CG199000 Rh1DG210900
rosa_wichuraiana Rw1G018160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 588
Acc36I ACCTGC 1 cut(s) 100
AccII CGCG 2 cut(s) 47, 116
AciI CCGC 2 cut(s) 168, 324
AclWI GGATC 2 cut(s) 113, 755
AcsI RAATTY 1 cut(s) 518
AcuI CTGAAG 1 cut(s) 46
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 1 cut(s) 204
AgsI TTSAA 3 cut(s) 486, 566, 596
AluBI AGCT 5 cut(s) 179, 267, 414, 455, 559
AluI AGCT 5 cut(s) 179, 267, 414, 455, 559
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 2 cut(s) 113, 755
Ama87I CYCGRG 1 cut(s) 129
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 2 cut(s) 356, 359
ApoI RAATTY 1 cut(s) 518
AspLEI GCGC 2 cut(s) 49, 420
AspS9I GGNCC 3 cut(s) 207, 386, 664
AsuC2I CCSGG 1 cut(s) 662
AsuHPI GGTGA 2 cut(s) 18, 349
AvaI CYCGRG 1 cut(s) 129
AvaII GGWCC 2 cut(s) 386, 664
BbvI GCAGC 2 cut(s) 343, 346
BceAI ACGGC 1 cut(s) 85
BcnI CCSGG 1 cut(s) 662
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 5 cut(s) 83, 183, 264, 450, 639
BfuAI ACCTGC 1 cut(s) 100
BisI GCNGC 3 cut(s) 324, 357, 360
BlsI GCNGC 3 cut(s) 325, 358, 361
Bme1390I CCNGG 1 cut(s) 662
Bme18I GGWCC 2 cut(s) 386, 664
BmeT110I CYCGRG 1 cut(s) 129
BmgT120I GGNCC 3 cut(s) 207, 386, 664
BmiI GGNNCC 3 cut(s) 12, 73, 665
BmrFI CCNGG 1 cut(s) 662
BmsI GCATC 3 cut(s) 448, 509, 659
BpuMI CCSGG 1 cut(s) 662
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 67, 101
BsaWI WCCGGW 2 cut(s) 28, 334
Bsc4I CCNNNNNNNGG 1 cut(s) 204
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 349
BseDI CCNNGG 2 cut(s) 67, 101
BseGI GGATG 1 cut(s) 331
BseLI CCNNNNNNNGG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 556
BseNI ACTGG 1 cut(s) 349
BseRI GAGGAG 2 cut(s) 13, 449
BseXI GCAGC 2 cut(s) 343, 346
Bsh1236I CGCG 2 cut(s) 47, 116
BshFI GGCC 1 cut(s) 209
BsiHKCI CYCGRG 1 cut(s) 129
BsiSI CCGG 4 cut(s) 29, 213, 335, 661
BslFI GGGAC 1 cut(s) 677
BslI CCNNNNNNNGG 1 cut(s) 204
BsmAI GTCTC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 677
BsnI GGCC 1 cut(s) 209
Bso31I GGTCTC 1 cut(s) 149
BsoBI CYCGRG 1 cut(s) 129
Bsp143I GATC 3 cut(s) 105, 185, 747
BspACI CCGC 2 cut(s) 168, 324
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 1 cut(s) 555
BspFNI CGCG 2 cut(s) 47, 116
BspHI TCATGA 1 cut(s) 426
BspLI GGNNCC 3 cut(s) 12, 73, 665
BspMI ACCTGC 1 cut(s) 100
BspPI GGATC 2 cut(s) 113, 755
BspTNI GGTCTC 1 cut(s) 149
BsrFI RCCGGY 1 cut(s) 212
BsrI ACTGG 1 cut(s) 349
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 2 cut(s) 67, 101
BssMI GATC 3 cut(s) 105, 185, 747
Bst4CI ACNGT 1 cut(s) 376
Bst6I CTCTTC 1 cut(s) 147
BstAPI GCANNNNNTGC 1 cut(s) 506
BstC8I GCNNGC 2 cut(s) 126, 416
BstDEI CTNAG 2 cut(s) 542, 751
BstDSI CCRYGG 2 cut(s) 67, 101
BstF5I GGATG 1 cut(s) 331
BstFNI CGCG 2 cut(s) 47, 116
BstHHI GCGC 2 cut(s) 49, 420
BstKTI GATC 3 cut(s) 108, 188, 750
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 3 cut(s) 105, 185, 747
BstMWI GCNNNNNNNGC 4 cut(s) 176, 320, 506, 689
BstSCI CCNGG 1 cut(s) 660
BstUI CGCG 2 cut(s) 47, 116
BstV1I GCAGC 2 cut(s) 343, 346
BstX2I RGATCY 1 cut(s) 747
BstYI RGATCY 1 cut(s) 747
BsuRI GGCC 1 cut(s) 209
BtgI CCRYGG 2 cut(s) 67, 101
BtsCI GGATG 1 cut(s) 331
BveI ACCTGC 1 cut(s) 100
Cac8I GCNNGC 2 cut(s) 126, 416
CciI TCATGA 1 cut(s) 426
CfoI GCGC 2 cut(s) 49, 420
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 3 cut(s) 207, 386, 664
CseI GACGC 1 cut(s) 402
Csp6I GTAC 1 cut(s) 403
CviAII CATG 2 cut(s) 427, 743
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 2 cut(s) 542, 751
DpnI GATC 3 cut(s) 107, 187, 749
DpnII GATC 3 cut(s) 105, 185, 747
DraI TTTAAA 1 cut(s) 615
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
EciI GGCGGA 1 cut(s) 157
Eco31I GGTCTC 1 cut(s) 149
Eco47I GGWCC 2 cut(s) 386, 664
Eco57I CTGAAG 1 cut(s) 46
Eco88I CYCGRG 1 cut(s) 129
EcoRI GAATTC 1 cut(s) 518
FaeI CATG 2 cut(s) 430, 746
FaiI YATR 8 cut(s) 270, 279, 428, 524, 588, 626, 656, 744
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FaqI GGGAC 1 cut(s) 677
FatI CATG 2 cut(s) 426, 742
Fnu4HI GCNGC 3 cut(s) 324, 357, 360
FokI GGATG 1 cut(s) 318
Fsp4HI GCNGC 3 cut(s) 324, 357, 360
FspBI CTAG 5 cut(s) 83, 183, 264, 450, 639
GlaI GCGC 2 cut(s) 48, 419
GluI GCNGC 3 cut(s) 324, 357, 360
HaeIII GGCC 1 cut(s) 209
HapII CCGG 4 cut(s) 29, 213, 335, 661
HgaI GACGC 1 cut(s) 402
HhaI GCGC 2 cut(s) 49, 420
Hin1II CATG 2 cut(s) 430, 746
Hin6I GCGC 2 cut(s) 47, 418
HinP1I GCGC 2 cut(s) 47, 418
HindIII AAGCTT 2 cut(s) 177, 412
HinfI GANTC 4 cut(s) 56, 202, 242, 437
HpaII CCGG 4 cut(s) 29, 213, 335, 661
HphI GGTGA 2 cut(s) 18, 349
Hpy166II GTNNAC 2 cut(s) 136, 372
Hpy188I TCNGA 2 cut(s) 199, 545
Hpy188III TCNNGA 3 cut(s) 183, 427, 450
Hpy8I GTNNAC 2 cut(s) 136, 372
Hpy99I CGWCG 2 cut(s) 10, 396
HpyAV CCTTC 2 cut(s) 70, 463
HpyCH4III ACNGT 1 cut(s) 376
HpyCH4V TGCA 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 320, 506, 689
HpyF3I CTNAG 2 cut(s) 542, 751
Hsp92II CATG 2 cut(s) 430, 746
HspAI GCGC 2 cut(s) 47, 418
Kzo9I GATC 3 cut(s) 105, 185, 747
Lsp1109I GCAGC 2 cut(s) 343, 346
LweI GCATC 3 cut(s) 448, 509, 659
MaeI CTAG 5 cut(s) 83, 183, 264, 450, 639
MaeIII GTNAC 2 cut(s) 670, 724
MalI GATC 3 cut(s) 107, 187, 749
MboI GATC 3 cut(s) 105, 185, 747
MboII GAAGA 4 cut(s) 34, 164, 263, 310
MfeI CAATTG 1 cut(s) 486
MflI RGATCY 1 cut(s) 747
MluCI AATT 5 cut(s) 486, 518, 561, 677, 732
MlyI GAGTC 3 cut(s) 50, 236, 446
MseI TTAA 2 cut(s) 303, 614
MspI CCGG 4 cut(s) 29, 213, 335, 661
MspR9I CCNGG 1 cut(s) 662
MunI CAATTG 1 cut(s) 486
MvnI CGCG 2 cut(s) 47, 116
MwoI GCNNNNNNNGC 4 cut(s) 176, 320, 506, 689
NciI CCSGG 1 cut(s) 662
NdeII GATC 3 cut(s) 105, 185, 747
NlaIII CATG 2 cut(s) 430, 746
NlaIV GGNNCC 3 cut(s) 12, 73, 665
NmuCI GTSAC 1 cut(s) 724
PagI TCATGA 1 cut(s) 426
PcsI WCGNNNNNNNCGW 1 cut(s) 51
PfeI GAWTC 1 cut(s) 202
PfoI TCCNGGA 1 cut(s) 660
PkrI GCNGC 3 cut(s) 325, 358, 361
PleI GAGTC 3 cut(s) 50, 236, 445
PpsI GAGTC 3 cut(s) 50, 236, 445
PsiI TTATAA 1 cut(s) 588
PspN4I GGNNCC 3 cut(s) 12, 73, 665
PspPI GGNCC 3 cut(s) 207, 386, 664
PsuI RGATCY 1 cut(s) 747
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
SaqAI TTAA 2 cut(s) 303, 614
SatI GCNGC 3 cut(s) 324, 357, 360
Sau3AI GATC 3 cut(s) 105, 185, 747
Sau96I GGNCC 3 cut(s) 207, 386, 664
SchI GAGTC 3 cut(s) 50, 236, 446
ScrFI CCNGG 1 cut(s) 662
SfaNI GCATC 3 cut(s) 448, 509, 659
SinI GGWCC 2 cut(s) 386, 664
Sse9I AATT 5 cut(s) 486, 518, 561, 677, 732
SsiI CCGC 2 cut(s) 168, 324
SspMI CTAG 5 cut(s) 83, 183, 264, 450, 639
StyD4I CCNGG 1 cut(s) 660
TaaI ACNGT 1 cut(s) 376
TaqI TCGA 3 cut(s) 108, 150, 174
TaqII GACCGA 1 cut(s) 68
TasI AATT 5 cut(s) 486, 518, 561, 677, 732
TatI WGTACW 1 cut(s) 402
TauI GCSGC 1 cut(s) 326
TfiI GAWTC 1 cut(s) 202
Tru1I TTAA 2 cut(s) 303, 614
Tru9I TTAA 2 cut(s) 303, 614
TseFI GTSAC 1 cut(s) 724
TseI GCWGC 2 cut(s) 356, 359
Tsp45I GTSAC 1 cut(s) 724
TspDTI ATGAA 2 cut(s) 415, 511
TspGWI ACGGA 2 cut(s) 23, 84
VpaK11BI GGWCC 2 cut(s) 386, 664
XapI RAATTY 1 cut(s) 518
XbaI TCTAGA 2 cut(s) 182, 449
XcmI CCANNNNNNNNNTGG 1 cut(s) 244
XspI CTAG 5 cut(s) 83, 183, 264, 450, 639
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.