MD07G1087600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0013300
Physical Location & Seq
Reverse (-)
9159966 .. 9167436
7471 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1087600.v1.1.491

Sequence Viewer

Length: 789 bp
ATGGCGACGGTGCCGGAAACCTCGTCGGAAGAGAATCCAACCCTATCACACAGCAATTCCATAAGCCACAGTCCCCAACCCCTAGACCAACTTGCCACACCGTGGGTCGACTATGCCGTCGAGCAGGCTCGGATTTACCAGAAGAACGTTGAAGAAACCTTCGAATCCGCCGTTGCAGCTTCTAGGTCACGTCTCTCCGAGATTCGAGCAACCTCCGCCGCTCATTTCAGCCAAACTATTAACTCTCTGGAAGATATCAAATCTAATTGTGCTGCTTATGAGGAACTTTTATTTGGGAAGATTAAAGAGGGTGTTCATGTTGCAGCTTCAAATCCCATGATTACAGCTGGAGTTGCAACTGGATTGGGGTTTCTGCTTCTGAAAAGACCACGACGCCTCTTGTACCACAAAGCCTTGCGCCTTTTTGTGAGCGAAGAGTCTTTACTTTCTAGAGCTGATGCCAAAGTAAAGGAGTTGCGACATTCAATTGATCTTCTAAAGGCTGAAAGTGAAAAATTAGAGAAGCGGGCATTACATGCTGAAGAGGAATTGACAAGGGGAAGGACAAAACTCAGACAAACAGGGAAACAAATCCAAAGTGTGATTCGCTCAGCTTATAAGGCTGAAAGACAAGCAGCAGGTTTGAAAGATATCCTTGGAGAGCTTCCCAGAAGAGAAGCAGCTGTGTTTCGGTCACAAGTTTCCAAACTAGCTACGGAGGCAAAGAAAGAAAGGAATGCTTTGTCAAAGGAGGTCACAAAAATTAGCAATTATGGGATCTCAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

263

Amino Acids

29.09

Weight (kDa)

9.4

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013300)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45060
fragaria_vesca FvH4_7g10760 FvH4_7g10760
malus_domestica MD07G1087600.v1.1
prunus_persica Prupe.2G135800_v2.0.a1
pyrus_communis pycom07g07010
rosa_chinensis RchiOBHm_Chr1g0348701
rosa_laevigata RLG00000028629
rosa_multiflora Rmu_sc0001674.1_g000007
rosa_roxburghii Rroxscaffold_4G00306730
rosa_rugosa Rorug01G0196800
rosa_samantha Rh1AG025500 Rh1AG214300 Rh1BG180900 Rh1CG023900 Rh1CG199000 Rh1DG210900
rosa_wichuraiana Rw1G018160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 618
AasI GACNNNNNNGTC 1 cut(s) 116
Acc36I ACCTGC 1 cut(s) 629
AccB1I GGYRCC 1 cut(s) 10
AccB7I CCANNNNNTGG 1 cut(s) 102
AccBSI CCGCTC 1 cut(s) 221
AccI GTMKAC 1 cut(s) 108
AciI CCGC 4 cut(s) 168, 216, 219, 526
AclI AACGTT 1 cut(s) 147
AclWI GGATC 1 cut(s) 785
AcuI CTGAAG 1 cut(s) 561
AcyI GRCGYC 1 cut(s) 394
AdeI CACNNNGTG 1 cut(s) 102
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 1 cut(s) 102
AgsI TTSAA 4 cut(s) 152, 330, 486, 646
AjiI CACGTC 1 cut(s) 191
AjuI GAANNNNNNNTTGG 4 cut(s) 276, 308, 588, 620
AluBI AGCT 8 cut(s) 179, 326, 347, 455, 614, 664, 683, 713
AluI AGCT 8 cut(s) 179, 326, 347, 455, 614, 664, 683, 713
Alw26I GTCTC 1 cut(s) 197
AlwI GGATC 1 cut(s) 785
ApeKI GCWGC 5 cut(s) 176, 272, 323, 635, 680
AspLEI GCGC 1 cut(s) 420
AsuII TTCGAA 1 cut(s) 162
BanI GGYRCC 1 cut(s) 10
BarI GAAGNNNNNNTAC 2 cut(s) 426, 458
BbvI GCAGC 5 cut(s) 188, 259, 335, 647, 692
BceAI ACGGC 2 cut(s) 101, 155
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 4 cut(s) 83, 183, 450, 710
BfuAI ACCTGC 1 cut(s) 629
BisI GCNGC 6 cut(s) 177, 219, 273, 324, 636, 681
BlpI GCTNAGC 1 cut(s) 610
BlsI GCNGC 6 cut(s) 178, 220, 274, 325, 637, 682
BmgBI CACGTC 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 12
BmsI GCATC 1 cut(s) 448
BpmI CTGGAG 1 cut(s) 369
Bpu1102I GCTNAGC 1 cut(s) 610
Bpu14I TTCGAA 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 394
BsaJI CCNNGG 2 cut(s) 101, 655
Bsc4I CCNNNNNNNGG 1 cut(s) 102
Bse1I ACTGG 1 cut(s) 364
BseDI CCNNGG 2 cut(s) 101, 655
BseLI CCNNNNNNNGG 1 cut(s) 102
BseMII CTCAG 2 cut(s) 586, 624
BseNI ACTGG 1 cut(s) 364
BseXI GCAGC 5 cut(s) 188, 259, 335, 647, 692
BshNI GGYRCC 1 cut(s) 10
BsiSI CCGG 1 cut(s) 14
BslFI GGGAC 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 102
BsmAI GTCTC 1 cut(s) 197
BsmBI CGTCTC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 57
BsmI GAATGC 1 cut(s) 742
Bsp119I TTCGAA 1 cut(s) 162
Bsp143I GATC 2 cut(s) 490, 777
Bsp1720I GCTNAGC 1 cut(s) 610
BspACI CCGC 4 cut(s) 168, 216, 219, 526
BspCNI CTCAG 2 cut(s) 585, 623
BspLI GGNNCC 1 cut(s) 12
BspMI ACCTGC 1 cut(s) 629
BspPI GGATC 1 cut(s) 785
BspT104I TTCGAA 1 cut(s) 162
BspT107I GGYRCC 1 cut(s) 10
BsrBI CCGCTC 1 cut(s) 221
BsrI ACTGG 1 cut(s) 364
BssECI CCNNGG 2 cut(s) 101, 655
BssMI GATC 2 cut(s) 490, 777
BssNI GRCGYC 1 cut(s) 394
BssT1I CCWWGG 1 cut(s) 655
Bst4CI ACNGT 3 cut(s) 10, 71, 102
Bst6I CTCTTC 4 cut(s) 24, 429, 537, 667
BstACI GRCGYC 1 cut(s) 394
BstAPI GCANNNNNTGC 1 cut(s) 536
BstBI TTCGAA 1 cut(s) 162
BstC8I GCNNGC 2 cut(s) 126, 528
BstDEI CTNAG 3 cut(s) 572, 610, 781
BstDSI CCRYGG 1 cut(s) 101
BstHHI GCGC 1 cut(s) 420
BstKTI GATC 2 cut(s) 493, 780
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 2 cut(s) 490, 777
BstMWI GCNNNNNNNGC 6 cut(s) 176, 215, 353, 536, 620, 719
BstNSI RCATGY 1 cut(s) 539
BstV1I GCAGC 5 cut(s) 188, 259, 335, 647, 692
BstX2I RGATCY 1 cut(s) 777
BstYI RGATCY 1 cut(s) 777
BtgI CCRYGG 1 cut(s) 101
BtrI CACGTC 1 cut(s) 191
BveI ACCTGC 1 cut(s) 629
Cac8I GCNNGC 2 cut(s) 126, 528
CfoI GCGC 1 cut(s) 420
CseI GACGC 1 cut(s) 402
Csp6I GTAC 1 cut(s) 403
CviAII CATG 3 cut(s) 317, 337, 536
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 3 cut(s) 572, 610, 781
DpnI GATC 2 cut(s) 492, 779
DpnII GATC 2 cut(s) 490, 777
DraIII CACNNNGTG 1 cut(s) 102
DrdI GACNNNNNNGTC 1 cut(s) 116
DseDI GACNNNNNNGTC 1 cut(s) 116
Eam1104I CTCTTC 4 cut(s) 24, 429, 537, 667
EarI CTCTTC 4 cut(s) 24, 429, 537, 667
EciI GGCGGA 2 cut(s) 157, 205
Eco130I CCWWGG 1 cut(s) 655
Eco32I GATATC 2 cut(s) 256, 652
Eco57I CTGAAG 1 cut(s) 561
EcoRV GATATC 2 cut(s) 256, 652
EcoT14I CCWWGG 1 cut(s) 655
ErhI CCWWGG 1 cut(s) 655
Esp3I CGTCTC 1 cut(s) 197
FaeI CATG 3 cut(s) 320, 340, 539
FaiI YATR 8 cut(s) 62, 114, 279, 318, 338, 537, 618, 774
FalI AAGNNNNNCTT 4 cut(s) 639, 671, 724, 756
FaqI GGGAC 1 cut(s) 57
FatI CATG 3 cut(s) 316, 336, 535
FauI CCCGC 1 cut(s) 519
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 6 cut(s) 177, 219, 273, 324, 636, 681
Fsp4HI GCNGC 6 cut(s) 177, 219, 273, 324, 636, 681
FspBI CTAG 4 cut(s) 83, 183, 450, 710
GlaI GCGC 1 cut(s) 419
GluI GCNGC 6 cut(s) 177, 219, 273, 324, 636, 681
GsuI CTGGAG 1 cut(s) 369
HapII CCGG 1 cut(s) 14
HgaI GACGC 1 cut(s) 402
HhaI GCGC 1 cut(s) 420
Hin1I GRCGYC 1 cut(s) 394
Hin1II CATG 3 cut(s) 320, 340, 539
Hin6I GCGC 1 cut(s) 418
HinP1I GCGC 1 cut(s) 418
HincII GTYRAC 1 cut(s) 109
HindII GTYRAC 1 cut(s) 109
HinfI GANTC 5 cut(s) 34, 164, 202, 437, 604
HpaII CCGG 1 cut(s) 14
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 6 cut(s) 28, 132, 199, 381, 575, 788
Hpy188III TCNNGA 2 cut(s) 248, 450
Hpy8I GTNNAC 1 cut(s) 109
Hpy99I CGWCG 4 cut(s) 10, 28, 122, 396
HpyAV CCTTC 2 cut(s) 169, 555
HpyCH4III ACNGT 3 cut(s) 10, 71, 102
HpyCH4IV ACGT 2 cut(s) 147, 190
HpyCH4V TGCA 3 cut(s) 176, 323, 356
HpyF10VI GCNNNNNNNGC 6 cut(s) 176, 215, 353, 536, 620, 719
HpyF3I CTNAG 3 cut(s) 572, 610, 781
HpySE526I ACGT 2 cut(s) 147, 190
Hsp92I GRCGYC 1 cut(s) 394
Hsp92II CATG 3 cut(s) 320, 340, 539
HspAI GCGC 1 cut(s) 418
Kzo9I GATC 2 cut(s) 490, 777
LpnPI CCDG 9 cut(s) 27, 110, 152, 233, 333, 345, 567, 624, 682
Lsp1109I GCAGC 5 cut(s) 188, 259, 335, 647, 692
LweI GCATC 1 cut(s) 448
MaeI CTAG 4 cut(s) 83, 183, 450, 710
MaeII ACGT 2 cut(s) 147, 190
MaeIII GTNAC 3 cut(s) 186, 693, 754
MalI GATC 2 cut(s) 492, 779
MbiI CCGCTC 1 cut(s) 221
MboI GATC 2 cut(s) 490, 777
MboII GAAGA 9 cut(s) 41, 154, 164, 263, 310, 446, 485, 554, 684
MfeI CAATTG 1 cut(s) 486
MflI RGATCY 1 cut(s) 777
MluCI AATT 7 cut(s) 55, 265, 486, 515, 548, 762, 769
MlyI GAGTC 1 cut(s) 446
MmeI TCCRAC 2 cut(s) 6, 62
MnlI CCTC 8 cut(s) 31, 223, 274, 301, 407, 538, 712, 745
MseI TTAA 2 cut(s) 240, 303
MspA1I CMGCKG 2 cut(s) 347, 683
MspI CCGG 1 cut(s) 14
MunI CAATTG 1 cut(s) 486
Mva1269I GAATGC 1 cut(s) 742
MwoI GCNNNNNNNGC 6 cut(s) 176, 215, 353, 536, 620, 719
NdeII GATC 2 cut(s) 490, 777
NlaIII CATG 3 cut(s) 320, 340, 539
NlaIV GGNNCC 1 cut(s) 12
NmuCI GTSAC 3 cut(s) 186, 693, 754
NspI RCATGY 1 cut(s) 539
NspV TTCGAA 1 cut(s) 162
PcsI WCGNNNNNNNCGW 2 cut(s) 114, 168
PctI GAATGC 1 cut(s) 742
PfeI GAWTC 4 cut(s) 34, 164, 202, 604
PflMI CCANNNNNTGG 1 cut(s) 102
PkrI GCNGC 6 cut(s) 178, 220, 274, 325, 637, 682
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
PsiI TTATAA 1 cut(s) 618
Psp1406I AACGTT 1 cut(s) 147
PspN4I GGNNCC 1 cut(s) 12
PsuI RGATCY 1 cut(s) 777
PvuII CAGCTG 2 cut(s) 347, 683
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
SalI GTCGAC 1 cut(s) 107
SaqAI TTAA 2 cut(s) 240, 303
SatI GCNGC 6 cut(s) 177, 219, 273, 324, 636, 681
Sau3AI GATC 2 cut(s) 490, 777
SchI GAGTC 1 cut(s) 446
SfaNI GCATC 1 cut(s) 448
SfuI TTCGAA 1 cut(s) 162
Sse9I AATT 7 cut(s) 55, 265, 486, 515, 548, 762, 769
SsiI CCGC 4 cut(s) 168, 216, 219, 526
SspMI CTAG 4 cut(s) 83, 183, 450, 710
StyI CCWWGG 1 cut(s) 655
TaaI ACNGT 3 cut(s) 10, 71, 102
TaiI ACGT 2 cut(s) 150, 193
TaqI TCGA 4 cut(s) 108, 120, 162, 205
TaqII GACCGA 1 cut(s) 681
TasI AATT 7 cut(s) 55, 265, 486, 515, 548, 762, 769
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 4 cut(s) 34, 164, 202, 604
Tru1I TTAA 2 cut(s) 240, 303
Tru9I TTAA 2 cut(s) 240, 303
TseFI GTSAC 3 cut(s) 186, 693, 754
TseI GCWGC 5 cut(s) 176, 272, 323, 635, 680
Tsp45I GTSAC 3 cut(s) 186, 693, 754
TspDTI ATGAA 1 cut(s) 305
TspGWI ACGGA 1 cut(s) 731
Van91I CCANNNNNTGG 1 cut(s) 102
XbaI TCTAGA 1 cut(s) 449
XceI RCATGY 1 cut(s) 539
XmiI GTMKAC 1 cut(s) 108
XspI CTAG 4 cut(s) 83, 183, 450, 710
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.