Prupe.2G135800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0013300
Physical Location & Seq
Reverse (-)
19335980 .. 19340125
4146 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G135800.1

Sequence Viewer

Length: 795 bp
ATGGCGACGGTGCCACTGCCAGAAAACTCCTCAGAAGAGAAGCCAGCCATATCACCCAACGACTCCATAAGTCACAGTCTCCATACCCTAGAGCAATCTGCCACTCCGTGGATCGACTACGCGGTCGAGCAGGCTCGGGTTTACCAGAAGACCATCGAAGAGACTTTCGAGTCCGCCATCGAAGCTTCTAGATCACGTCTCTCCGAGATTCGGTCCACCTCCGCTGCTCATTTCAGCCAAACCATTAACTCTTTGGAAGATATCAAGTCTGATTATGGTACTTATGAGGATATGTTTTTTGGGAAGATTAAAGAGGGTGTTCTTATTGCGGCTTCACATCCCATGATTACTGGTGGAGTTGCTGCTGGTTTGGGTCTTCTGGTTTTAAAAAGGCCACGACGCCTGTTGTACCACAAAACTTTGCGCCTTTTTGTGAGCGAAGAGTCTTTACTTTCTAGAGCTGATGCCAAAGTAAAGGAGTTGCGACATTCAATTGATCTTCTAAAGGCTGAAGGTGAAAAATTAGAGAAGAGGGCTTCACATGCTGAAGAGGAACTGATAAGGGGAAGGACAAAACTCAGACAAACAGGGAAACAAATTGAAAGTGTCATTCGCTCAGCTTATAAGATTGAAAGACAAGCAGCGGGTTTAAAAGATATCCTTGGTGAACTTCCTAGAAGAGAAGCATCCATGTTCCGGTCACAAGTCTCCAAACTAGCTACCGAGGCAAAGCAAGAAAGGAATGCTTTGACAAAGGAAGTCACAAAAATTAGCAATTATGGGATCTCAGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

265

Amino Acids

29.52

Weight (kDa)

8.9

Isoelectric Point (pI)

58.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013300)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45060
fragaria_vesca FvH4_7g10760 FvH4_7g10760
malus_domestica MD07G1087600.v1.1
prunus_persica Prupe.2G135800_v2.0.a1
pyrus_communis pycom07g07010
rosa_chinensis RchiOBHm_Chr1g0348701
rosa_laevigata RLG00000028629
rosa_multiflora Rmu_sc0001674.1_g000007
rosa_roxburghii Rroxscaffold_4G00306730
rosa_rugosa Rorug01G0196800
rosa_samantha Rh1AG025500 Rh1AG214300 Rh1BG180900 Rh1CG023900 Rh1CG199000 Rh1DG210900
rosa_wichuraiana Rw1G018160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 624
AasI GACNNNNNNGTC 2 cut(s) 122, 169
AccB1I GGYRCC 1 cut(s) 10
AccB7I CCANNNNNTGG 1 cut(s) 108
AccII CGCG 1 cut(s) 122
AciI CCGC 5 cut(s) 122, 174, 222, 329, 644
AclWI GGATC 2 cut(s) 119, 791
AcuI CTGAAG 2 cut(s) 531, 567
AcyI GRCGYC 1 cut(s) 400
AdeI CACNNNGTG 1 cut(s) 108
AfaI GTAC 2 cut(s) 280, 410
AfiI CCNNNNNNNGG 3 cut(s) 108, 210, 696
AgsI TTSAA 3 cut(s) 492, 602, 632
AjiI CACGTC 1 cut(s) 197
AluBI AGCT 4 cut(s) 185, 461, 620, 719
AluI AGCT 4 cut(s) 185, 461, 620, 719
Alw26I GTCTC 4 cut(s) 83, 155, 203, 712
AlwI GGATC 2 cut(s) 119, 791
Ama87I CYCGRG 1 cut(s) 135
AoxI GGCC 1 cut(s) 392
ApeKI GCWGC 3 cut(s) 224, 362, 641
AspLEI GCGC 1 cut(s) 426
AspS9I GGNCC 1 cut(s) 213
AsuHPI GGTGA 3 cut(s) 45, 527, 677
AvaI CYCGRG 1 cut(s) 135
AvaII GGWCC 1 cut(s) 213
BanI GGYRCC 1 cut(s) 10
BarI GAAGNNNNNNTAC 2 cut(s) 432, 464
BbsI GAAGAC 2 cut(s) 155, 368
BbvI GCAGC 3 cut(s) 211, 349, 653
BccI CCATC 2 cut(s) 161, 185
BcoDI GTCTC 4 cut(s) 83, 155, 203, 712
BfaI CTAG 5 cut(s) 89, 189, 456, 675, 716
BisI GCNGC 4 cut(s) 225, 330, 363, 642
BlpI GCTNAGC 1 cut(s) 616
BlsI GCNGC 4 cut(s) 226, 331, 364, 643
Bme18I GGWCC 1 cut(s) 213
BmeT110I CYCGRG 1 cut(s) 135
BmgBI CACGTC 1 cut(s) 197
BmgT120I GGNCC 1 cut(s) 213
BmiI GGNNCC 1 cut(s) 12
BmsI GCATC 2 cut(s) 454, 695
BpiI GAAGAC 2 cut(s) 155, 368
Bpu1102I GCTNAGC 1 cut(s) 616
BsaHI GRCGYC 1 cut(s) 400
BsaJI CCNNGG 3 cut(s) 107, 661, 723
BsaWI WCCGGW 1 cut(s) 696
Bsc4I CCNNNNNNNGG 3 cut(s) 108, 210, 696
Bse1I ACTGG 1 cut(s) 355
BseDI CCNNGG 3 cut(s) 107, 661, 723
BseGI GGATG 2 cut(s) 337, 686
BseLI CCNNNNNNNGG 3 cut(s) 108, 210, 696
BseMII CTCAG 3 cut(s) 45, 592, 630
BseNI ACTGG 1 cut(s) 355
BseRI GAGGAG 1 cut(s) 19
BseXI GCAGC 3 cut(s) 211, 349, 653
Bsh1236I CGCG 1 cut(s) 122
Bsh1285I CGRYCG 1 cut(s) 126
BshFI GGCC 1 cut(s) 394
BshNI GGYRCC 1 cut(s) 10
BsiEI CGRYCG 1 cut(s) 126
BsiHKCI CYCGRG 1 cut(s) 135
BsiSI CCGG 1 cut(s) 697
BslI CCNNNNNNNGG 3 cut(s) 108, 210, 696
BsmAI GTCTC 4 cut(s) 83, 155, 203, 712
BsmBI CGTCTC 1 cut(s) 203
BsmI GAATGC 1 cut(s) 748
BsnI GGCC 1 cut(s) 394
BsoBI CYCGRG 1 cut(s) 135
Bsp143I GATC 4 cut(s) 111, 191, 496, 783
Bsp1720I GCTNAGC 1 cut(s) 616
BspACI CCGC 5 cut(s) 122, 174, 222, 329, 644
BspANI GGCC 1 cut(s) 394
BspCNI CTCAG 3 cut(s) 44, 591, 629
BspFNI CGCG 1 cut(s) 122
BspLI GGNNCC 1 cut(s) 12
BspPI GGATC 2 cut(s) 119, 791
BspT107I GGYRCC 1 cut(s) 10
BsrI ACTGG 1 cut(s) 355
BssECI CCNNGG 3 cut(s) 107, 661, 723
BssMI GATC 4 cut(s) 111, 191, 496, 783
BssNI GRCGYC 1 cut(s) 400
BssT1I CCWWGG 1 cut(s) 661
Bst4CI ACNGT 2 cut(s) 10, 77
Bst6I CTCTTC 6 cut(s) 30, 153, 435, 524, 543, 673
BstACI GRCGYC 1 cut(s) 400
BstC8I GCNNGC 2 cut(s) 45, 132
BstDEI CTNAG 4 cut(s) 31, 578, 616, 787
BstDSI CCRYGG 1 cut(s) 107
BstF5I GGATG 2 cut(s) 337, 686
BstFNI CGCG 1 cut(s) 122
BstHHI GCGC 1 cut(s) 426
BstKTI GATC 4 cut(s) 114, 194, 499, 786
BstMAI GTCTC 4 cut(s) 83, 155, 203, 712
BstMBI GATC 4 cut(s) 111, 191, 496, 783
BstMCI CGRYCG 1 cut(s) 126
BstMWI GCNNNNNNNGC 3 cut(s) 182, 542, 725
BstNSI RCATGY 1 cut(s) 545
BstUI CGCG 1 cut(s) 122
BstV1I GCAGC 3 cut(s) 211, 349, 653
BstV2I GAAGAC 2 cut(s) 155, 368
BstX2I RGATCY 1 cut(s) 783
BstYI RGATCY 1 cut(s) 783
BsuRI GGCC 1 cut(s) 394
BtgI CCRYGG 1 cut(s) 107
BtrI CACGTC 1 cut(s) 197
BtsCI GGATG 2 cut(s) 337, 686
BtsI GCAGTG 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 14
Cac8I GCNNGC 2 cut(s) 45, 132
CfoI GCGC 1 cut(s) 426
Cfr13I GGNCC 1 cut(s) 213
CseI GACGC 1 cut(s) 408
Csp6I GTAC 2 cut(s) 279, 409
CviAII CATG 3 cut(s) 343, 542, 691
CviQI GTAC 2 cut(s) 279, 409
DdeI CTNAG 4 cut(s) 31, 578, 616, 787
DpnI GATC 4 cut(s) 113, 193, 498, 785
DpnII GATC 4 cut(s) 111, 191, 496, 783
DraI TTTAAA 2 cut(s) 387, 651
DraIII CACNNNGTG 1 cut(s) 108
DrdI GACNNNNNNGTC 2 cut(s) 122, 169
DseDI GACNNNNNNGTC 2 cut(s) 122, 169
Eam1104I CTCTTC 6 cut(s) 30, 153, 435, 524, 543, 673
EarI CTCTTC 6 cut(s) 30, 153, 435, 524, 543, 673
EciI GGCGGA 1 cut(s) 163
Eco130I CCWWGG 1 cut(s) 661
Eco32I GATATC 2 cut(s) 262, 658
Eco47I GGWCC 1 cut(s) 213
Eco57I CTGAAG 2 cut(s) 531, 567
Eco88I CYCGRG 1 cut(s) 135
EcoRV GATATC 2 cut(s) 262, 658
EcoT14I CCWWGG 1 cut(s) 661
ErhI CCWWGG 1 cut(s) 661
Esp3I CGTCTC 1 cut(s) 203
FaeI CATG 3 cut(s) 346, 545, 694
FalI AAGNNNNNCTT 4 cut(s) 645, 677, 730, 762
FatI CATG 3 cut(s) 342, 541, 690
FauI CCCGC 1 cut(s) 637
Fnu4HI GCNGC 4 cut(s) 225, 330, 363, 642
FokI GGATG 2 cut(s) 324, 673
Fsp4HI GCNGC 4 cut(s) 225, 330, 363, 642
FspBI CTAG 5 cut(s) 89, 189, 456, 675, 716
GlaI GCGC 1 cut(s) 425
GluI GCNGC 4 cut(s) 225, 330, 363, 642
HaeIII GGCC 1 cut(s) 394
HapII CCGG 1 cut(s) 697
HgaI GACGC 1 cut(s) 408
HhaI GCGC 1 cut(s) 426
Hin1I GRCGYC 1 cut(s) 400
Hin1II CATG 3 cut(s) 346, 545, 694
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HindIII AAGCTT 1 cut(s) 183
HinfI GANTC 4 cut(s) 62, 170, 208, 443
HpaII CCGG 1 cut(s) 697
HphI GGTGA 3 cut(s) 45, 527, 677
Hpy166II GTNNAC 3 cut(s) 142, 216, 668
Hpy188I TCNGA 5 cut(s) 34, 205, 271, 581, 794
Hpy188III TCNNGA 2 cut(s) 189, 456
Hpy8I GTNNAC 3 cut(s) 142, 216, 668
Hpy99I CGWCG 2 cut(s) 10, 402
HpyAV CCTTC 2 cut(s) 506, 561
HpyCH4III ACNGT 2 cut(s) 10, 77
HpyCH4IV ACGT 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 542, 725
HpyF3I CTNAG 4 cut(s) 31, 578, 616, 787
HpySE526I ACGT 1 cut(s) 196
Hsp92I GRCGYC 1 cut(s) 400
Hsp92II CATG 3 cut(s) 346, 545, 694
HspAI GCGC 1 cut(s) 424
Kzo9I GATC 4 cut(s) 111, 191, 496, 783
Lsp1109I GCAGC 3 cut(s) 211, 349, 653
LweI GCATC 2 cut(s) 454, 695
MaeI CTAG 5 cut(s) 89, 189, 456, 675, 716
MaeII ACGT 1 cut(s) 196
MaeIII GTNAC 3 cut(s) 71, 699, 760
MalI GATC 4 cut(s) 113, 193, 498, 785
MboI GATC 4 cut(s) 111, 191, 496, 783
MfeI CAATTG 1 cut(s) 492
MflI RGATCY 1 cut(s) 783
MluCI AATT 5 cut(s) 492, 521, 597, 768, 775
MlyI GAGTC 3 cut(s) 56, 179, 452
MnlI CCTC 7 cut(s) 40, 229, 280, 307, 525, 544, 718
MseI TTAA 4 cut(s) 246, 309, 386, 650
MspA1I CMGCKG 2 cut(s) 224, 644
MspI CCGG 1 cut(s) 697
MunI CAATTG 1 cut(s) 492
Mva1269I GAATGC 1 cut(s) 748
MvnI CGCG 1 cut(s) 122
MwoI GCNNNNNNNGC 3 cut(s) 182, 542, 725
NdeII GATC 4 cut(s) 111, 191, 496, 783
NlaIII CATG 3 cut(s) 346, 545, 694
NlaIV GGNNCC 1 cut(s) 12
NmuCI GTSAC 3 cut(s) 71, 699, 760
NspI RCATGY 1 cut(s) 545
PctI GAATGC 1 cut(s) 748
PfeI GAWTC 1 cut(s) 208
PflMI CCANNNNNTGG 1 cut(s) 108
PkrI GCNGC 4 cut(s) 226, 331, 364, 643
PleI GAGTC 3 cut(s) 56, 178, 451
PpsI GAGTC 3 cut(s) 56, 178, 451
PsiI TTATAA 1 cut(s) 624
PspN4I GGNNCC 1 cut(s) 12
PspPI GGNCC 1 cut(s) 213
PsuI RGATCY 1 cut(s) 783
RsaI GTAC 2 cut(s) 280, 410
RsaNI GTAC 2 cut(s) 279, 409
SaqAI TTAA 4 cut(s) 246, 309, 386, 650
SatI GCNGC 4 cut(s) 225, 330, 363, 642
Sau3AI GATC 4 cut(s) 111, 191, 496, 783
Sau96I GGNCC 1 cut(s) 213
SchI GAGTC 3 cut(s) 56, 179, 452
SetI ASST 7 cut(s) 187, 199, 221, 463, 517, 622, 721
SfaNI GCATC 2 cut(s) 454, 695
SinI GGWCC 1 cut(s) 213
Sse9I AATT 5 cut(s) 492, 521, 597, 768, 775
SsiI CCGC 5 cut(s) 122, 174, 222, 329, 644
SspMI CTAG 5 cut(s) 89, 189, 456, 675, 716
StyI CCWWGG 1 cut(s) 661
TaaI ACNGT 2 cut(s) 10, 77
TaiI ACGT 1 cut(s) 199
TaqI TCGA 5 cut(s) 114, 126, 156, 168, 180
TaqII GACCGA 1 cut(s) 201
TasI AATT 5 cut(s) 492, 521, 597, 768, 775
TauI GCSGC 1 cut(s) 332
TfiI GAWTC 1 cut(s) 208
Tru1I TTAA 4 cut(s) 246, 309, 386, 650
Tru9I TTAA 4 cut(s) 246, 309, 386, 650
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 3 cut(s) 71, 699, 760
TseI GCWGC 3 cut(s) 224, 362, 641
Tsp45I GTSAC 3 cut(s) 71, 699, 760
TspGWI ACGGA 1 cut(s) 96
TspRI CASTG 1 cut(s) 21
Van91I CCANNNNNTGG 1 cut(s) 108
VpaK11BI GGWCC 1 cut(s) 213
XbaI TCTAGA 2 cut(s) 188, 455
XceI RCATGY 1 cut(s) 545
XcmI CCANNNNNNNNNTGG 1 cut(s) 250
XspI CTAG 5 cut(s) 89, 189, 456, 675, 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.