Rorug01G0196800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0013300
Physical Location & Seq
Forward (+)
27556942 .. 27557754
813 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0196800.1

Sequence Viewer

Length: 789 bp
ATGGCTGGCGTCGTGAATGATTCGGTGGAGACCCTGAGTCAGGCGGACTCGTCTTTGGTGGCACTAGGGGATGCAAGGGCTACGGCGTTCCAGGACAACCACTGGTACATGGCAAGGTTTCCAGGGTTTAAGGGTACAATCTCCACTATCTGGCATATTAGATTAAGCCTTACCATTCAAGATGCAGGTGAGCGTTTTGTGTTTCAATTTGAGAATGAAGCTGTGCGTAATCAGATTTTGCATGGGAGGCCTTGGTTCTATCTTAACACGATGCTTGTGGTGGGAGAATATGACGGGTTTGATCCGCCAGAGACGGTGGCTTTGAATTTGATGGAGACCTGGGTAGCAGTGAGGGGTCTTCCTCTTGCTCTGAGGAATAAGACAGCGCTCAATATGGTGGGTACGACGCTAGGGCAAGTGGTTCGAATGGACTTGACTGCCCTGAAAAGAAAAGAAGAAGAGCAGCGGATCAAGATAGTGTTTGATGTTCGTCGGCATATTCGTACCTGGAAAGTCGTTGAATTTTCTCGGGTGATGAGGCCGGAATTGACGTTCATCTATGAAAAGGTCAAGGGATATTGTCGTGACTGTGGTTTGTTTATTCATGATGCTATGGGATGTGACAAAGCTTTGATCAAGGAAAAGGAAGAGCTTCTGGCACGATCATCGGTGGCGGCTATGGCTGGTTTGTCCTTAACCTCGCGGAAGGATGTAGTGCCCTCTATGCTGGAGACGGAGTTGGGCACGGGAAGTACTGATCTCATTTGTTTGGAAAATGTCTCGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

262

Amino Acids

29.51

Weight (kDa)

6.24

Isoelectric Point (pI)

39.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 45 - 99 4.4e-06 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013300)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45060
fragaria_vesca FvH4_7g10760 FvH4_7g10760
malus_domestica MD07G1087600.v1.1
prunus_persica Prupe.2G135800_v2.0.a1
pyrus_communis pycom07g07010
rosa_chinensis RchiOBHm_Chr1g0348701
rosa_laevigata RLG00000028629
rosa_multiflora Rmu_sc0001674.1_g000007
rosa_roxburghii Rroxscaffold_4G00306730
rosa_rugosa Rorug01G0196800
rosa_samantha Rh1AG025500 Rh1AG214300 Rh1BG180900 Rh1CG023900 Rh1CG199000 Rh1DG210900
rosa_wichuraiana Rw1G018160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 176
Acc36I ACCTGC 1 cut(s) 176
AccB7I CCANNNNNTGG 1 cut(s) 150
AccII CGCG 1 cut(s) 703
AciI CCGC 5 cut(s) 44, 305, 466, 674, 703
AclWI GGATC 2 cut(s) 296, 476
AcsI RAATTY 2 cut(s) 325, 521
AcyI GRCGYC 1 cut(s) 9
AfaI GTAC 5 cut(s) 107, 136, 403, 505, 754
AfeI AGCGCT 1 cut(s) 387
AfiI CCNNNNNNNGG 2 cut(s) 40, 150
AgsI TTSAA 4 cut(s) 179, 206, 325, 521
AhdI GACNNNNNGTC 1 cut(s) 36
AjnI CCWGG 4 cut(s) 90, 121, 338, 506
AloI GAACNNNNNNTCC 2 cut(s) 536, 568
AluBI AGCT 3 cut(s) 221, 629, 652
AluI AGCT 3 cut(s) 221, 629, 652
Alw26I GTCTC 5 cut(s) 23, 305, 329, 725, 784
AlwI GGATC 2 cut(s) 296, 476
Ama87I CYCGRG 2 cut(s) 528, 781
Aor51HI AGCGCT 1 cut(s) 387
AoxI GGCC 2 cut(s) 248, 539
ApeKI GCWGC 1 cut(s) 463
ApoI RAATTY 2 cut(s) 325, 521
ArsI GACNNNNNNTTYG 2 cut(s) 304, 336
Asp700I GAANNNNTTC 1 cut(s) 651
AspLEI GCGC 1 cut(s) 388
AsuHPI GGTGA 2 cut(s) 200, 544
AsuII TTCGAA 1 cut(s) 424
AvaI CYCGRG 2 cut(s) 528, 781
BaeGI GKGCMC 2 cut(s) 720, 746
BbsI GAAGAC 1 cut(s) 350
BbvI GCAGC 1 cut(s) 475
BccI CCATC 1 cut(s) 325
BceAI ACGGC 1 cut(s) 99
BcgI CGANNNNNNTGC 4 cut(s) 404, 438, 648, 682
BciT130I CCWGG 4 cut(s) 92, 123, 340, 508
BclI TGATCA 1 cut(s) 633
BcoDI GTCTC 5 cut(s) 23, 305, 329, 725, 784
BfaI CTAG 3 cut(s) 65, 410, 787
BfoI RGCGCY 1 cut(s) 389
BfuAI ACCTGC 1 cut(s) 176
BisI GCNGC 2 cut(s) 464, 675
BlsI GCNGC 2 cut(s) 465, 676
BmcAI AGTACT 1 cut(s) 754
Bme1390I CCNGG 4 cut(s) 92, 123, 340, 508
BmeRI GACNNNNNGTC 1 cut(s) 36
BmeT110I CYCGRG 2 cut(s) 528, 781
BmrFI CCNGG 4 cut(s) 92, 123, 340, 508
BmsI GCATC 4 cut(s) 61, 172, 261, 598
BpiI GAAGAC 1 cut(s) 350
BpmI CTGGAG 1 cut(s) 749
Bpu14I TTCGAA 1 cut(s) 424
BsaHI GRCGYC 1 cut(s) 9
BsaI GGTCTC 2 cut(s) 23, 329
BsaJI CCNNGG 3 cut(s) 122, 251, 339
BsaXI ACNNNNNCTCC 2 cut(s) 722, 752
Bsc4I CCNNNNNNNGG 2 cut(s) 40, 150
Bse1I ACTGG 1 cut(s) 107
BseBI CCWGG 4 cut(s) 92, 123, 340, 508
BseDI CCNNGG 3 cut(s) 122, 251, 339
BseGI GGATG 3 cut(s) 76, 623, 715
BseLI CCNNNNNNNGG 2 cut(s) 40, 150
BseMII CTCAG 2 cut(s) 26, 362
BseNI ACTGG 1 cut(s) 107
BseSI GKGCMC 2 cut(s) 720, 746
BseXI GCAGC 1 cut(s) 475
Bsh1236I CGCG 1 cut(s) 703
BshFI GGCC 2 cut(s) 250, 541
BsiHKCI CYCGRG 2 cut(s) 528, 781
BsiSI CCGG 1 cut(s) 542
BslI CCNNNNNNNGG 2 cut(s) 40, 150
BsmAI GTCTC 5 cut(s) 23, 305, 329, 725, 784
BsmBI CGTCTC 2 cut(s) 305, 725
BsnI GGCC 2 cut(s) 250, 541
Bso31I GGTCTC 2 cut(s) 23, 329
BsoBI CYCGRG 2 cut(s) 528, 781
Bsp119I TTCGAA 1 cut(s) 424
Bsp1286I GDGCHC 2 cut(s) 720, 746
Bsp143I GATC 5 cut(s) 301, 468, 633, 662, 757
BspACI CCGC 5 cut(s) 44, 305, 466, 674, 703
BspANI GGCC 2 cut(s) 250, 541
BspCNI CTCAG 2 cut(s) 27, 363
BspFNI CGCG 1 cut(s) 703
BspHI TCATGA 1 cut(s) 604
BspMI ACCTGC 1 cut(s) 176
BspPI GGATC 2 cut(s) 296, 476
BspQI GCTCTTC 2 cut(s) 453, 642
BspT104I TTCGAA 1 cut(s) 424
BspTNI GGTCTC 2 cut(s) 23, 329
BsrI ACTGG 1 cut(s) 107
BssECI CCNNGG 3 cut(s) 122, 251, 339
BssMI GATC 5 cut(s) 301, 468, 633, 662, 757
BssNI GRCGYC 1 cut(s) 9
BssT1I CCWWGG 1 cut(s) 251
Bst2UI CCWGG 4 cut(s) 92, 123, 340, 508
Bst4CI ACNGT 2 cut(s) 316, 590
Bst6I CTCTTC 2 cut(s) 453, 642
BstACI GRCGYC 1 cut(s) 9
BstBI TTCGAA 1 cut(s) 424
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 2 cut(s) 35, 371
BstENI CCTNNNNNAGG 1 cut(s) 38
BstF5I GGATG 3 cut(s) 76, 623, 715
BstFNI CGCG 1 cut(s) 703
BstH2I RGCGCY 1 cut(s) 389
BstHHI GCGC 1 cut(s) 388
BstKTI GATC 5 cut(s) 304, 471, 636, 665, 760
BstMAI GTCTC 5 cut(s) 23, 305, 329, 725, 784
BstMBI GATC 5 cut(s) 301, 468, 633, 662, 757
BstMWI GCNNNNNNNGC 3 cut(s) 247, 680, 724
BstNI CCWGG 4 cut(s) 92, 123, 340, 508
BstSCI CCNGG 4 cut(s) 90, 121, 338, 506
BstSLI GKGCMC 2 cut(s) 720, 746
BstUI CGCG 1 cut(s) 703
BstV1I GCAGC 1 cut(s) 475
BstV2I GAAGAC 1 cut(s) 350
BsuRI GGCC 2 cut(s) 250, 541
BtsCI GGATG 3 cut(s) 76, 623, 715
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 2 cut(s) 100, 354
BveI ACCTGC 1 cut(s) 176
Cac8I GCNNGC 1 cut(s) 7
CciI TCATGA 1 cut(s) 604
CfoI GCGC 1 cut(s) 388
CseI GACGC 1 cut(s) 415
Csp6I GTAC 5 cut(s) 106, 135, 402, 504, 753
CviAII CATG 3 cut(s) 109, 242, 605
CviQI GTAC 5 cut(s) 106, 135, 402, 504, 753
DdeI CTNAG 2 cut(s) 35, 371
DpnI GATC 5 cut(s) 303, 470, 635, 664, 759
DpnII GATC 5 cut(s) 301, 468, 633, 662, 757
DriI GACNNNNNGTC 1 cut(s) 36
Eam1104I CTCTTC 2 cut(s) 453, 642
Eam1105I GACNNNNNGTC 1 cut(s) 36
EarI CTCTTC 2 cut(s) 453, 642
EciI GGCGGA 2 cut(s) 59, 294
Eco130I CCWWGG 1 cut(s) 251
Eco147I AGGCCT 1 cut(s) 250
Eco31I GGTCTC 2 cut(s) 23, 329
Eco47III AGCGCT 1 cut(s) 387
Eco88I CYCGRG 2 cut(s) 528, 781
EcoNI CCTNNNNNAGG 1 cut(s) 38
EcoRII CCWGG 4 cut(s) 90, 121, 338, 506
EcoT14I CCWWGG 1 cut(s) 251
ErhI CCWWGG 1 cut(s) 251
Esp3I CGTCTC 2 cut(s) 305, 725
FaeI CATG 3 cut(s) 112, 245, 608
FatI CATG 3 cut(s) 108, 241, 604
FbaI TGATCA 1 cut(s) 633
Fnu4HI GCNGC 2 cut(s) 464, 675
FokI GGATG 3 cut(s) 83, 630, 722
Fsp4HI GCNGC 2 cut(s) 464, 675
FspBI CTAG 3 cut(s) 65, 410, 787
GlaI GCGC 1 cut(s) 387
GluI GCNGC 2 cut(s) 464, 675
GsuI CTGGAG 1 cut(s) 749
HaeII RGCGCY 1 cut(s) 389
HaeIII GGCC 2 cut(s) 250, 541
HapII CCGG 1 cut(s) 542
HgaI GACGC 1 cut(s) 415
HhaI GCGC 1 cut(s) 388
Hin1I GRCGYC 1 cut(s) 9
Hin1II CATG 3 cut(s) 112, 245, 608
Hin6I GCGC 1 cut(s) 386
HinP1I GCGC 1 cut(s) 386
HindIII AAGCTT 1 cut(s) 627
HinfI GANTC 3 cut(s) 20, 37, 47
HpaII CCGG 1 cut(s) 542
HphI GGTGA 2 cut(s) 200, 544
Hpy188I TCNGA 2 cut(s) 234, 372
Hpy188III TCNNGA 5 cut(s) 13, 179, 472, 584, 605
Hpy99I CGWCG 3 cut(s) 14, 409, 495
HpyAV CCTTC 1 cut(s) 700
HpyCH4III ACNGT 2 cut(s) 316, 590
HpyCH4IV ACGT 1 cut(s) 551
HpyCH4V TGCA 3 cut(s) 74, 185, 241
HpyF10VI GCNNNNNNNGC 3 cut(s) 247, 680, 724
HpyF3I CTNAG 2 cut(s) 35, 371
HpySE526I ACGT 1 cut(s) 551
Hsp92I GRCGYC 1 cut(s) 9
Hsp92II CATG 3 cut(s) 112, 245, 608
HspAI GCGC 1 cut(s) 386
Ksp22I TGATCA 1 cut(s) 633
Kzo9I GATC 5 cut(s) 301, 468, 633, 662, 757
LguI GCTCTTC 2 cut(s) 453, 642
Lsp1109I GCAGC 1 cut(s) 475
LweI GCATC 4 cut(s) 61, 172, 261, 598
MaeI CTAG 3 cut(s) 65, 410, 787
MaeII ACGT 1 cut(s) 551
MaeIII GTNAC 2 cut(s) 584, 620
MalI GATC 5 cut(s) 303, 470, 635, 664, 759
MboI GATC 5 cut(s) 301, 468, 633, 662, 757
MboII GAAGA 4 cut(s) 350, 467, 470, 659
MhlI GDGCHC 2 cut(s) 720, 746
MluCI AATT 4 cut(s) 206, 325, 521, 545
MlyI GAGTC 2 cut(s) 41, 46
MnlI CCTC 7 cut(s) 240, 345, 366, 372, 531, 709, 730
MroXI GAANNNNTTC 1 cut(s) 651
MseI TTAA 4 cut(s) 129, 164, 264, 695
MspA1I CMGCKG 1 cut(s) 466
MspI CCGG 1 cut(s) 542
MspR9I CCNGG 4 cut(s) 92, 123, 340, 508
MvaI CCWGG 4 cut(s) 92, 123, 340, 508
MvnI CGCG 1 cut(s) 703
MwoI GCNNNNNNNGC 3 cut(s) 247, 680, 724
NdeII GATC 5 cut(s) 301, 468, 633, 662, 757
NlaIII CATG 3 cut(s) 112, 245, 608
NmuCI GTSAC 2 cut(s) 584, 620
NspV TTCGAA 1 cut(s) 424
PagI TCATGA 1 cut(s) 604
PaqCI CACCTGC 1 cut(s) 176
PceI AGGCCT 1 cut(s) 250
PciSI GCTCTTC 2 cut(s) 453, 642
PcsI WCGNNNNNNNCGW 1 cut(s) 499
PdmI GAANNNNTTC 1 cut(s) 651
PfeI GAWTC 1 cut(s) 20
PflMI CCANNNNNTGG 1 cut(s) 150
PfoI TCCNGGA 1 cut(s) 90
PkrI GCNGC 2 cut(s) 465, 676
PleI GAGTC 2 cut(s) 41, 45
PpsI GAGTC 2 cut(s) 41, 45
Psp6I CCWGG 4 cut(s) 90, 121, 338, 506
PspGI CCWGG 4 cut(s) 90, 121, 338, 506
RsaI GTAC 5 cut(s) 107, 136, 403, 505, 754
RsaNI GTAC 5 cut(s) 106, 135, 402, 504, 753
SapI GCTCTTC 2 cut(s) 453, 642
SaqAI TTAA 4 cut(s) 129, 164, 264, 695
SatI GCNGC 2 cut(s) 464, 675
Sau3AI GATC 5 cut(s) 301, 468, 633, 662, 757
ScaI AGTACT 1 cut(s) 754
SchI GAGTC 2 cut(s) 41, 46
ScrFI CCNGG 4 cut(s) 92, 123, 340, 508
SduI GDGCHC 2 cut(s) 720, 746
SfaNI GCATC 4 cut(s) 61, 172, 261, 598
SfuI TTCGAA 1 cut(s) 424
Sse9I AATT 4 cut(s) 206, 325, 521, 545
SseBI AGGCCT 1 cut(s) 250
SsiI CCGC 5 cut(s) 44, 305, 466, 674, 703
SspMI CTAG 3 cut(s) 65, 410, 787
StuI AGGCCT 1 cut(s) 250
StyD4I CCNGG 4 cut(s) 90, 121, 338, 506
StyI CCWWGG 1 cut(s) 251
TaaI ACNGT 2 cut(s) 316, 590
TaiI ACGT 1 cut(s) 554
TaqI TCGA 1 cut(s) 424
TasI AATT 4 cut(s) 206, 325, 521, 545
TatI WGTACW 1 cut(s) 752
TauI GCSGC 1 cut(s) 677
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 4 cut(s) 129, 164, 264, 695
Tru9I TTAA 4 cut(s) 129, 164, 264, 695
TscAI CASTG 2 cut(s) 107, 354
TseFI GTSAC 2 cut(s) 584, 620
TseI GCWGC 1 cut(s) 463
Tsp45I GTSAC 2 cut(s) 584, 620
TspDTI ATGAA 4 cut(s) 231, 544, 576, 593
TspGWI ACGGA 1 cut(s) 749
TspRI CASTG 2 cut(s) 107, 354
Van91I CCANNNNNTGG 1 cut(s) 150
XagI CCTNNNNNAGG 1 cut(s) 38
XapI RAATTY 2 cut(s) 325, 521
XmnI GAANNNNTTC 1 cut(s) 651
XspI CTAG 3 cut(s) 65, 410, 787
ZrmI AGTACT 1 cut(s) 754
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.