Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010691

Physical Location & Seq

Genomic Coordinates Forward (+)

18610806 .. 18613302

Gene Structure 2497 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G45140.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAGTAACGAGCTTCTCACCATCGATCCTGTCGACCTTCAATTCCCTTTTGAATTGAAGAAGCAGATCTCTTGTTCTCTCTATTTGGGTAACAAGACCGATAATTATGTCGCCTTCAAGGTTAAGACGACGAATCCAAAGAAGTACTGCGTTAGGCCTAATACTGGTGTTGTTCATCCCAGATCCTCTTCTGAAGTTTTAGTGACCATGCAAGCTCAAAAGGAAGCTCCTGCTGATCTGCAGTGTAAAGATAAGTTCTTGCTTCAATGTGTAGTCGCTAGTCCCGGAGCCACCCCCAAGGATGTTACACATGAGATGTTTAGCAAAGAGGCAGGGCATCGAGTTGAAGAGACTAAATTGAGAGTTGTCTATGTTGCTCCACCACGACCACCATCACCGGTTCGAGAAGGATCTGAAGAGGGCTCTTCACCGAGGGCTTCTGTCTCTGATAATGGGAATGCTTCTGATTTTACTGCTGCTCCAAGATTTAGCGCAGACAGGGTTGATGCTCAGGATAATTCATCTGAGGCAAGAGCTCTGGTCACAAAACTCACCGAGGAAAAGAACTCTGCGGTTCAACTGAACAACAGGCTTCAACAAGAATTGGACCAGTTGAGGCGCGAAAGCAAGAGAAGTAAGAGTGGTGGAATCCCTTTCATGTACGTTCTTCTGGTCGGCCTAATCGGTTTAATCCTGGGATACATTATGAAGAGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0005829 GO:0005886 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0031224 GO:0031984 GO:0033036 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

239

Amino Acids

26.44

Weight (kDa)

8.97

Isoelectric Point (pI)

49.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	6 - 111	2.7e-32	MSP (Major sperm protein) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45140 AT2G45140 AT3G60600 AT3G60600
fragaria_vesca	FvH4_7g11090
malus_domestica	MD02G1210500.v1.1 MD07G1115600.v1.1
prunus_persica	Prupe.2G138100_v2.0.a1
pyrus_communis	pycom02g17230 pycom07g10890
rosa_chinensis	RchiOBHm_Chr1g0349111
rosa_laevigata	RLG00000028605
rosa_multiflora	Rmu_sc0008324.1_g000004 Rmu_sc0012100.1_g000006
rosa_roxburghii	Rroxscaffold_4G00306110
rosa_rugosa	Rorug01G0200200
rosa_samantha	Rh1AG217900 Rh1BG183500 Rh1CG202300
rosa_wichuraiana	Rw1G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	33
AccII	CGCG	1 cut(s)	621
AciI	CCGC	1 cut(s)	572
AclWI	GGATC	3 cut(s)	20, 177, 418
AcuI	CTGAAG	2 cut(s)	213, 435
AfaI	GTAC	2 cut(s)	146, 662
AfiI	CCNNNNNNNGG	1 cut(s)	164
AgeI	ACCGGT	1 cut(s)	397
AgsI	TTSAA	8 cut(s)	41, 53, 58, 118, 266, 347, 578, 596
AjnI	CCWGG	1 cut(s)	693
AluBI	AGCT	4 cut(s)	13, 215, 227, 536
AluI	AGCT	4 cut(s)	13, 215, 227, 536
Alw21I	GWGCWC	1 cut(s)	538
Alw26I	GTCTC	2 cut(s)	344, 448
AlwI	GGATC	3 cut(s)	20, 177, 418
AoxI	GGCC	2 cut(s)	155, 676
ApeKI	GCWGC	1 cut(s)	476
AsiGI	ACCGGT	1 cut(s)	397
AspLEI	GCGC	2 cut(s)	494, 621
AspS9I	GGNCC	1 cut(s)	607
AsuC2I	CCSGG	1 cut(s)	285
AsuHPI	GGTGA	4 cut(s)	10, 387, 420, 544
AvaII	GGWCC	1 cut(s)	607
BanII	GRGCYC	2 cut(s)	425, 538
Bbv12I	GWGCWC	1 cut(s)	538
BbvI	GCAGC	1 cut(s)	463
BccI	CCATC	2 cut(s)	29, 400
BciT130I	CCWGG	1 cut(s)	695
BciVI	GTATCC	1 cut(s)	692
BcnI	CCSGG	1 cut(s)	285
BcoDI	GTCTC	2 cut(s)	344, 448
BfaI	CTAG	1 cut(s)	279
BfmI	CTRYAG	1 cut(s)	239
BfuI	GTATCC	1 cut(s)	692
BglII	AGATCT	1 cut(s)	66
BisI	GCNGC	1 cut(s)	477
BlsI	GCNGC	1 cut(s)	478
BmcAI	AGTACT	1 cut(s)	146
Bme1390I	CCNGG	2 cut(s)	285, 695
Bme18I	GGWCC	1 cut(s)	607
BmgT120I	GGNCC	1 cut(s)	607
BmiI	GGNNCC	1 cut(s)	289
BmrFI	CCNGG	2 cut(s)	285, 695
BmsI	GCATC	2 cut(s)	346, 496
Bpu10I	CCTNAGC	1 cut(s)	510
BpuMI	CCSGG	1 cut(s)	285
Bsa29I	ATCGAT	1 cut(s)	24
BsaJI	CCNNGG	4 cut(s)	297, 431, 555, 694
BsaWI	WCCGGW	1 cut(s)	397
BsaXI	ACNNNNNCTCC	2 cut(s)	463, 493
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse118I	RCCGGY	1 cut(s)	397
Bse1I	ACTGG	2 cut(s)	169, 610
BseBI	CCWGG	1 cut(s)	695
BseCI	ATCGAT	1 cut(s)	24
BseDI	CCNNGG	4 cut(s)	297, 431, 555, 694
BseGI	GGATG	2 cut(s)	175, 307
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMII	CTCAG	2 cut(s)	516, 524
BseNI	ACTGG	2 cut(s)	169, 610
BseXI	GCAGC	1 cut(s)	463
Bsh1236I	CGCG	1 cut(s)	621
BshFI	GGCC	2 cut(s)	157, 678
BshTI	ACCGGT	1 cut(s)	397
BshVI	ATCGAT	1 cut(s)	24
BsiHKAI	GWGCWC	1 cut(s)	538
BsiSI	CCGG	2 cut(s)	285, 398
BslFI	GGGAC	1 cut(s)	267
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	2 cut(s)	344, 448
BsmFI	GGGAC	1 cut(s)	267
BsmI	GAATGC	1 cut(s)	463
BsnI	GGCC	2 cut(s)	157, 678
Bsp1286I	GDGCHC	2 cut(s)	425, 538
Bsp143I	GATC	5 cut(s)	25, 66, 182, 235, 410
BspACI	CCGC	1 cut(s)	572
BspANI	GGCC	2 cut(s)	157, 678
BspCNI	CTCAG	2 cut(s)	517, 523
BspDI	ATCGAT	1 cut(s)	24
BspFNI	CGCG	1 cut(s)	621
BspLI	GGNNCC	1 cut(s)	289
BspMAI	CTGCAG	1 cut(s)	243
BspPI	GGATC	3 cut(s)	20, 177, 418
BspQI	GCTCTTC	1 cut(s)	430
BsrFI	RCCGGY	1 cut(s)	397
BsrI	ACTGG	2 cut(s)	169, 610
BssAI	RCCGGY	1 cut(s)	397
BssECI	CCNNGG	4 cut(s)	297, 431, 555, 694
BssMI	GATC	5 cut(s)	25, 66, 182, 235, 410
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	695
Bst6I	CTCTTC	5 cut(s)	193, 342, 411, 430, 704
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	2 cut(s)	510, 525
BstF5I	GGATG	2 cut(s)	175, 307
BstFNI	CGCG	1 cut(s)	621
BstHHI	GCGC	2 cut(s)	494, 621
BstKTI	GATC	5 cut(s)	28, 69, 185, 238, 413
BstMAI	GTCTC	2 cut(s)	344, 448
BstMBI	GATC	5 cut(s)	25, 66, 182, 235, 410
BstNI	CCWGG	1 cut(s)	695
BstSCI	CCNGG	2 cut(s)	283, 693
BstSFI	CTRYAG	1 cut(s)	239
BstUI	CGCG	1 cut(s)	621
BstV1I	GCAGC	1 cut(s)	463
BstX2I	RGATCY	3 cut(s)	66, 182, 410
BstYI	RGATCY	3 cut(s)	66, 182, 410
Bsu15I	ATCGAT	1 cut(s)	24
BsuI	GTATCC	1 cut(s)	692
BsuRI	GGCC	2 cut(s)	157, 678
BsuTUI	ATCGAT	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	175, 307
BtsI	GCAGTG	1 cut(s)	248
BtsIMutI	CAGTG	1 cut(s)	248
Cac8I	GCNNGC	1 cut(s)	213
CfoI	GCGC	2 cut(s)	494, 621
Cfr10I	RCCGGY	1 cut(s)	397
Cfr13I	GGNCC	1 cut(s)	607
ClaI	ATCGAT	1 cut(s)	24
Csp6I	GTAC	2 cut(s)	145, 661
CspAI	ACCGGT	1 cut(s)	397
CviAII	CATG	4 cut(s)	208, 311, 658, 717
CviQI	GTAC	2 cut(s)	145, 661
DdeI	CTNAG	2 cut(s)	510, 525
DpnI	GATC	5 cut(s)	27, 68, 184, 237, 412
DpnII	GATC	5 cut(s)	25, 66, 182, 235, 410
Eam1104I	CTCTTC	5 cut(s)	193, 342, 411, 430, 704
EarI	CTCTTC	5 cut(s)	193, 342, 411, 430, 704
Ecl136II	GAGCTC	1 cut(s)	536
Eco130I	CCWWGG	1 cut(s)	297
Eco147I	AGGCCT	1 cut(s)	157
Eco24I	GRGCYC	2 cut(s)	425, 538
Eco47I	GGWCC	1 cut(s)	607
Eco53kI	GAGCTC	1 cut(s)	536
Eco57I	CTGAAG	2 cut(s)	213, 435
EcoICRI	GAGCTC	1 cut(s)	536
EcoRII	CCWGG	1 cut(s)	693
EcoT14I	CCWWGG	1 cut(s)	297
EcoT38I	GRGCYC	2 cut(s)	425, 538
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	4 cut(s)	211, 314, 661, 720
FaiI	YATR	7 cut(s)	108, 209, 312, 372, 659, 707, 718
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	4 cut(s)	207, 310, 657, 716
FblI	GTMKAC	1 cut(s)	33
Fnu4HI	GCNGC	1 cut(s)	477
FokI	GGATG	2 cut(s)	162, 314
FriOI	GRGCYC	2 cut(s)	425, 538
Fsp4HI	GCNGC	1 cut(s)	477
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	2 cut(s)	493, 620
GluI	GCNGC	1 cut(s)	477
HaeIII	GGCC	2 cut(s)	157, 678
HapII	CCGG	2 cut(s)	285, 398
HhaI	GCGC	2 cut(s)	494, 621
Hin1II	CATG	4 cut(s)	211, 314, 661, 720
Hin6I	GCGC	2 cut(s)	492, 619
HinP1I	GCGC	2 cut(s)	492, 619
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HinfI	GANTC	2 cut(s)	133, 648
HpaII	CCGG	2 cut(s)	285, 398
HphI	GGTGA	4 cut(s)	10, 387, 420, 544
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	5 cut(s)	193, 415, 448, 466, 526
Hpy188III	TCNNGA	2 cut(s)	404, 512
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	1 cut(s)	133
HpyAV	CCTTC	3 cut(s)	47, 124, 401
HpyCH4IV	ACGT	1 cut(s)	663
HpyCH4V	TGCA	2 cut(s)	211, 241
HpyF3I	CTNAG	2 cut(s)	510, 525
HpySE526I	ACGT	1 cut(s)	663
Hsp92II	CATG	4 cut(s)	211, 314, 661, 720
HspAI	GCGC	2 cut(s)	492, 619
Kzo9I	GATC	5 cut(s)	25, 66, 182, 235, 410
LguI	GCTCTTC	1 cut(s)	430
LmnI	GCTCC	4 cut(s)	232, 287, 382, 484
Lsp1109I	GCAGC	1 cut(s)	463
LweI	GCATC	2 cut(s)	346, 496
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	1 cut(s)	663
MaeIII	GTNAC	5 cut(s)	5, 89, 202, 304, 541
MalI	GATC	5 cut(s)	27, 68, 184, 237, 412
MboI	GATC	5 cut(s)	25, 66, 182, 235, 410
MboII	GAAGA	6 cut(s)	70, 180, 359, 417, 428, 659
MflI	RGATCY	3 cut(s)	66, 182, 410
MhlI	GDGCHC	2 cut(s)	425, 538
MluCI	AATT	6 cut(s)	41, 53, 103, 356, 517, 602
MnlI	CCTC	8 cut(s)	196, 322, 412, 426, 520, 550, 609, 705
MseI	TTAA	2 cut(s)	123, 689
MspI	CCGG	2 cut(s)	285, 398
MspR9I	CCNGG	2 cut(s)	285, 695
Mva1269I	GAATGC	1 cut(s)	463
MvaI	CCWGG	1 cut(s)	695
MvnI	CGCG	1 cut(s)	621
NciI	CCSGG	1 cut(s)	285
NdeII	GATC	5 cut(s)	25, 66, 182, 235, 410
NlaIII	CATG	4 cut(s)	211, 314, 661, 720
NlaIV	GGNNCC	1 cut(s)	289
NmuCI	GTSAC	2 cut(s)	202, 541
PceI	AGGCCT	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	430
PcsI	WCGNNNNNNNCGW	1 cut(s)	30
PctI	GAATGC	1 cut(s)	463
PfeI	GAWTC	2 cut(s)	133, 648
PfoI	TCCNGGA	1 cut(s)	283
PinAI	ACCGGT	1 cut(s)	397
PkrI	GCNGC	1 cut(s)	478
Psp124BI	GAGCTC	1 cut(s)	538
Psp6I	CCWGG	1 cut(s)	693
PspGI	CCWGG	1 cut(s)	693
PspN4I	GGNNCC	1 cut(s)	289
PspPI	GGNCC	1 cut(s)	607
PstI	CTGCAG	1 cut(s)	243
PsuI	RGATCY	3 cut(s)	66, 182, 410
RsaI	GTAC	2 cut(s)	146, 662
RsaNI	GTAC	2 cut(s)	145, 661
SacI	GAGCTC	1 cut(s)	538
SalI	GTCGAC	1 cut(s)	32
SapI	GCTCTTC	1 cut(s)	430
SaqAI	TTAA	2 cut(s)	123, 689
SatI	GCNGC	1 cut(s)	477
Sau3AI	GATC	5 cut(s)	25, 66, 182, 235, 410
Sau96I	GGNCC	1 cut(s)	607
ScaI	AGTACT	1 cut(s)	146
ScrFI	CCNGG	2 cut(s)	285, 695
SduI	GDGCHC	2 cut(s)	425, 538
SetI	ASST	7 cut(s)	15, 39, 123, 217, 229, 538, 666
SfaNI	GCATC	2 cut(s)	346, 496
SfcI	CTRYAG	1 cut(s)	239
SinI	GGWCC	1 cut(s)	607
Sse9I	AATT	6 cut(s)	41, 53, 103, 356, 517, 602
SseBI	AGGCCT	1 cut(s)	157
SsiI	CCGC	1 cut(s)	572
SspMI	CTAG	1 cut(s)	279
SstI	GAGCTC	1 cut(s)	538
StuI	AGGCCT	1 cut(s)	157
StyD4I	CCNGG	2 cut(s)	283, 693
StyI	CCWWGG	1 cut(s)	297
TaiI	ACGT	1 cut(s)	666
TaqI	TCGA	4 cut(s)	24, 33, 340, 403
TaqII	GACCGA	1 cut(s)	113
TasI	AATT	6 cut(s)	41, 53, 103, 356, 517, 602
TatI	WGTACW	1 cut(s)	144
TfiI	GAWTC	2 cut(s)	133, 648
Tru1I	TTAA	2 cut(s)	123, 689
Tru9I	TTAA	2 cut(s)	123, 689
TscAI	CASTG	1 cut(s)	248
TseFI	GTSAC	2 cut(s)	202, 541
TseI	GCWGC	1 cut(s)	476
Tsp45I	GTSAC	2 cut(s)	202, 541
TspDTI	ATGAA	3 cut(s)	164, 510, 646
TspRI	CASTG	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	607
XmiI	GTMKAC	1 cut(s)	33
XspI	CTAG	1 cut(s)	279
ZrmI	AGTACT	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.