Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0010691

Physical Location & Seq

Genomic Coordinates Reverse (-)

11281293 .. 11283821

Gene Structure 2529 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g10890.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAGCACCGGCGAGCTTCTCAGCATCGAACCCCAAGAGCTCCAATTCCCCTTTGAATTGAGGAAACAGATCTCTTGCTCTCTGCAACTCTCCAACAAAACCAACGACTATGTGGCTTTCAAGGTAAAAACAACAAATCCCAAGAAGTATTGTGTTAGACCAAACACTGGGGTTGTGTTGCCAAGGTCCACATGTGATGTTATAGTGACAATGCAAGCACAAAAGGAGGCGCCTTTGGATATGCAATGCAAGGACAAGTTCCTTCTTCAGAGCGCCGTTGCCAGCCCTGGGACGACCACCAAGGACATCACTGCAGAGATGTTCAATAAGGAGTCGGGGCATAATGTTGAAGAGTGTAAGTTGAGGGTTCTCTATGTTGCTCCGCCTCGGCCACCATCGCCGGTTCGCGAAGGTTCAGAGGAAGGTTCATCACCCAGGGCTTCAGTGGACAACGGGAGTGCAGCTGCTTCTGAGTTCAAAGCTGCTTCAAGAGCTTTCTCTGAGCAACACGAGCCTCAAGATAACTCATCTGAGGCAAGGACATTAATTGCGAGGCTGACTGAGGAGAAAAATTCTGCCATTCAGCAAACTAACAGGCTTCAACAAGAACTGGCTGTTTTGAGGCGCGGGGTCAACAGGAGTGCTGGCGGTATTCCATTTATCTACGTTCTTCTAGTTGGCTTGATTGGCATTATTTTGGGGTACATTCTGAAGAAGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0005829 GO:0005886 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0031224 GO:0031984 GO:0033036 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

241

Amino Acids

26.38

Weight (kDa)

8.77

Isoelectric Point (pI)

60.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45140 AT2G45140 AT3G60600 AT3G60600
fragaria_vesca	FvH4_7g11090
malus_domestica	MD02G1210500.v1.1 MD07G1115600.v1.1
prunus_persica	Prupe.2G138100_v2.0.a1
pyrus_communis	pycom02g17230 pycom07g10890
rosa_chinensis	RchiOBHm_Chr1g0349111
rosa_laevigata	RLG00000028605
rosa_multiflora	Rmu_sc0008324.1_g000004 Rmu_sc0012100.1_g000006
rosa_roxburghii	Rroxscaffold_4G00306110
rosa_rugosa	Rorug01G0200200
rosa_samantha	Rh1AG217900 Rh1BG183500 Rh1CG202300
rosa_wichuraiana	Rw1G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	229
AccB7I	CCANNNNNTGG	1 cut(s)	167
AccII	CGCG	2 cut(s)	408, 627
AciI	CCGC	3 cut(s)	383, 627, 648
AcoI	YGGCCR	1 cut(s)	389
AcsI	RAATTY	1 cut(s)	571
AcuI	CTGAAG	2 cut(s)	251, 426
AcyI	GRCGYC	1 cut(s)	230
AfaI	GTAC	1 cut(s)	704
AfiI	CCNNNNNNNGG	2 cut(s)	167, 288
AflIII	ACRYGT	1 cut(s)	191
AgsI	TTSAA	7 cut(s)	56, 121, 325, 350, 478, 489, 602
AjnI	CCWGG	2 cut(s)	286, 434
AluBI	AGCT	5 cut(s)	16, 40, 464, 482, 494
AluI	AGCT	5 cut(s)	16, 40, 464, 482, 494
Alw21I	GWGCWC	2 cut(s)	8, 42
AoxI	GGCC	1 cut(s)	389
ApeKI	GCWGC	3 cut(s)	461, 464, 482
ApoI	RAATTY	1 cut(s)	571
AseI	ATTAAT	1 cut(s)	545
AspLEI	GCGC	3 cut(s)	232, 275, 627
AspS9I	GGNCC	1 cut(s)	186
AsuHPI	GGTGA	1 cut(s)	423
AvaII	GGWCC	1 cut(s)	186
BanI	GGYRCC	1 cut(s)	229
BanII	GRGCYC	1 cut(s)	42
BauI	CACGAG	1 cut(s)	509
Bbv12I	GWGCWC	2 cut(s)	8, 42
BbvI	GCAGC	3 cut(s)	451, 469, 473
BccI	CCATC	1 cut(s)	403
BceAI	ACGGC	1 cut(s)	260
BciT130I	CCWGG	2 cut(s)	288, 436
BfaI	CTAG	1 cut(s)	674
BfmI	CTRYAG	1 cut(s)	312
BfoI	RGCGCY	2 cut(s)	233, 276
BglII	AGATCT	1 cut(s)	69
BisI	GCNGC	3 cut(s)	462, 465, 483
BlsI	GCNGC	3 cut(s)	463, 466, 484
Bme1390I	CCNGG	2 cut(s)	288, 436
Bme18I	GGWCC	1 cut(s)	186
BmgT120I	GGNCC	1 cut(s)	186
BmiI	GGNNCC	1 cut(s)	231
BmrFI	CCNGG	2 cut(s)	288, 436
BmrI	ACTGGG	1 cut(s)	177
BmsI	GCATC	1 cut(s)	33
BmuI	ACTGGG	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	501
BsaHI	GRCGYC	1 cut(s)	230
BsaJI	CCNNGG	7 cut(s)	182, 286, 287, 300, 386, 434, 435
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 288
Bse118I	RCCGGY	2 cut(s)	8, 400
Bse1I	ACTGG	2 cut(s)	172, 615
Bse3DI	GCAATG	1 cut(s)	251
BseBI	CCWGG	2 cut(s)	288, 436
BseDI	CCNNGG	7 cut(s)	182, 286, 287, 300, 386, 434, 435
BseLI	CCNNNNNNNGG	2 cut(s)	167, 288
BseMI	GCAATG	1 cut(s)	251
BseMII	CTCAG	5 cut(s)	34, 462, 492, 522, 552
BseNI	ACTGG	2 cut(s)	172, 615
BseRI	GAGGAG	1 cut(s)	578
BseXI	GCAGC	3 cut(s)	451, 469, 473
BsgI	GTGCAG	1 cut(s)	480
Bsh1236I	CGCG	2 cut(s)	408, 627
BshFI	GGCC	1 cut(s)	391
BshNI	GGYRCC	1 cut(s)	229
BsiHKAI	GWGCWC	2 cut(s)	8, 42
BsiSI	CCGG	2 cut(s)	9, 401
BslFI	GGGAC	1 cut(s)	304
BslI	CCNNNNNNNGG	2 cut(s)	167, 288
BsmFI	GGGAC	1 cut(s)	304
BsnI	GGCC	1 cut(s)	391
Bsp1286I	GDGCHC	2 cut(s)	8, 42
Bsp143I	GATC	1 cut(s)	69
Bsp68I	TCGCGA	1 cut(s)	408
BspACI	CCGC	3 cut(s)	383, 627, 648
BspANI	GGCC	1 cut(s)	391
BspCNI	CTCAG	5 cut(s)	33, 463, 493, 523, 553
BspFNI	CGCG	2 cut(s)	408, 627
BspLI	GGNNCC	1 cut(s)	231
BspMAI	CTGCAG	1 cut(s)	316
BspT107I	GGYRCC	1 cut(s)	229
BsrDI	GCAATG	1 cut(s)	251
BsrFI	RCCGGY	2 cut(s)	8, 400
BsrI	ACTGG	2 cut(s)	172, 615
BssAI	RCCGGY	2 cut(s)	8, 400
BssECI	CCNNGG	7 cut(s)	182, 286, 287, 300, 386, 434, 435
BssMI	GATC	1 cut(s)	69
BssNI	GRCGYC	1 cut(s)	230
BssSI	CACGAG	1 cut(s)	509
BssT1I	CCWWGG	2 cut(s)	182, 300
Bst2BI	CACGAG	1 cut(s)	509
Bst2UI	CCWGG	2 cut(s)	288, 436
Bst6I	CTCTTC	1 cut(s)	345
BstACI	GRCGYC	1 cut(s)	230
BstC8I	GCNNGC	4 cut(s)	14, 216, 283, 646
BstDEI	CTNAG	5 cut(s)	20, 471, 501, 531, 561
BstFNI	CGCG	2 cut(s)	408, 627
BstH2I	RGCGCY	2 cut(s)	233, 276
BstHHI	GCGC	3 cut(s)	232, 275, 627
BstKTI	GATC	1 cut(s)	72
BstMBI	GATC	1 cut(s)	69
BstMWI	GCNNNNNNNGC	4 cut(s)	397, 491, 511, 687
BstNI	CCWGG	2 cut(s)	288, 436
BstNSI	RCATGY	1 cut(s)	195
BstSCI	CCNGG	2 cut(s)	286, 434
BstSFI	CTRYAG	1 cut(s)	312
BstUI	CGCG	2 cut(s)	408, 627
BstV1I	GCAGC	3 cut(s)	451, 469, 473
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	391
BtgZI	GCGATG	1 cut(s)	381
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	3 cut(s)	165, 309, 450
BtuMI	TCGCGA	1 cut(s)	408
Cac8I	GCNNGC	4 cut(s)	14, 216, 283, 646
CfoI	GCGC	3 cut(s)	232, 275, 627
Cfr10I	RCCGGY	2 cut(s)	8, 400
Cfr13I	GGNCC	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	703
CviAII	CATG	2 cut(s)	192, 720
CviQI	GTAC	1 cut(s)	703
DdeI	CTNAG	5 cut(s)	20, 471, 501, 531, 561
DinI	GGCGCC	1 cut(s)	231
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
EaeI	YGGCCR	1 cut(s)	389
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
EciI	GGCGGA	1 cut(s)	372
Ecl136II	GAGCTC	1 cut(s)	40
Eco130I	CCWWGG	2 cut(s)	182, 300
Eco24I	GRGCYC	1 cut(s)	42
Eco47I	GGWCC	1 cut(s)	186
Eco53kI	GAGCTC	1 cut(s)	40
Eco57I	CTGAAG	2 cut(s)	251, 426
EcoICRI	GAGCTC	1 cut(s)	40
EcoRII	CCWGG	2 cut(s)	286, 434
EcoT14I	CCWWGG	2 cut(s)	182, 300
EcoT38I	GRGCYC	1 cut(s)	42
EgeI	GGCGCC	1 cut(s)	231
EheI	GGCGCC	1 cut(s)	231
ErhI	CCWWGG	2 cut(s)	182, 300
FaeI	CATG	2 cut(s)	195, 723
FaiI	YATR	7 cut(s)	111, 193, 203, 242, 342, 375, 721
FaqI	GGGAC	1 cut(s)	304
FatI	CATG	2 cut(s)	191, 719
FauI	CCCGC	1 cut(s)	620
Fnu4HI	GCNGC	3 cut(s)	462, 465, 483
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	3 cut(s)	462, 465, 483
FspBI	CTAG	1 cut(s)	674
GlaI	GCGC	3 cut(s)	231, 274, 626
GluI	GCNGC	3 cut(s)	462, 465, 483
HaeII	RGCGCY	2 cut(s)	233, 276
HaeIII	GGCC	1 cut(s)	391
HapII	CCGG	2 cut(s)	9, 401
HhaI	GCGC	3 cut(s)	232, 275, 627
Hin1I	GRCGYC	1 cut(s)	230
Hin1II	CATG	2 cut(s)	195, 723
Hin6I	GCGC	3 cut(s)	230, 273, 625
HinP1I	GCGC	3 cut(s)	230, 273, 625
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HinfI	GANTC	1 cut(s)	332
HpaII	CCGG	2 cut(s)	9, 401
HphI	GGTGA	1 cut(s)	423
Hpy166II	GTNNAC	3 cut(s)	189, 448, 634
Hpy188I	TCNGA	6 cut(s)	270, 418, 472, 502, 532, 711
Hpy188III	TCNNGA	3 cut(s)	407, 489, 518
Hpy8I	GTNNAC	3 cut(s)	189, 448, 634
HpyAV	CCTTC	3 cut(s)	272, 404, 416
HpyCH4IV	ACGT	1 cut(s)	666
HpyCH4V	TGCA	6 cut(s)	85, 214, 244, 249, 314, 461
HpyF10VI	GCNNNNNNNGC	4 cut(s)	397, 491, 511, 687
HpyF3I	CTNAG	5 cut(s)	20, 471, 501, 531, 561
HpySE526I	ACGT	1 cut(s)	666
Hsp92I	GRCGYC	1 cut(s)	230
Hsp92II	CATG	2 cut(s)	195, 723
HspAI	GCGC	3 cut(s)	230, 273, 625
KasI	GGCGCC	1 cut(s)	229
Kzo9I	GATC	1 cut(s)	69
LmnI	GCTCC	2 cut(s)	45, 385
Lsp1109I	GCAGC	3 cut(s)	451, 469, 473
LweI	GCATC	1 cut(s)	33
MaeI	CTAG	1 cut(s)	674
MaeII	ACGT	1 cut(s)	666
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	1 cut(s)	71
MboI	GATC	1 cut(s)	69
MboII	GAAGA	3 cut(s)	257, 362, 662
MflI	RGATCY	1 cut(s)	69
MhlI	GDGCHC	2 cut(s)	8, 42
MluCI	AATT	4 cut(s)	44, 56, 546, 571
Mly113I	GGCGCC	1 cut(s)	230
MlyI	GAGTC	1 cut(s)	341
MmeI	TCCRAC	1 cut(s)	117
MseI	TTAA	1 cut(s)	545
MspA1I	CMGCKG	1 cut(s)	464
MspI	CCGG	2 cut(s)	9, 401
MspR9I	CCNGG	2 cut(s)	288, 436
MvaI	CCWGG	2 cut(s)	288, 436
MvnI	CGCG	2 cut(s)	408, 627
MwoI	GCNNNNNNNGC	4 cut(s)	397, 491, 511, 687
NarI	GGCGCC	1 cut(s)	230
NdeII	GATC	1 cut(s)	69
NlaIII	CATG	2 cut(s)	195, 723
NlaIV	GGNNCC	1 cut(s)	231
NmeAIII	GCCGAG	1 cut(s)	367
NmuCI	GTSAC	1 cut(s)	205
NruI	TCGCGA	1 cut(s)	408
NspI	RCATGY	1 cut(s)	195
PasI	CCCWGGG	2 cut(s)	287, 435
PciI	ACATGT	1 cut(s)	191
PflMI	CCANNNNNTGG	1 cut(s)	167
PkrI	GCNGC	3 cut(s)	463, 466, 484
PleI	GAGTC	1 cut(s)	340
PluTI	GGCGCC	1 cut(s)	233
PpsI	GAGTC	1 cut(s)	340
PscI	ACATGT	1 cut(s)	191
PshBI	ATTAAT	1 cut(s)	545
Psp124BI	GAGCTC	1 cut(s)	42
Psp6I	CCWGG	2 cut(s)	286, 434
PspGI	CCWGG	2 cut(s)	286, 434
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	1 cut(s)	186
PstI	CTGCAG	1 cut(s)	316
PsuI	RGATCY	1 cut(s)	69
PvuII	CAGCTG	1 cut(s)	464
RruI	TCGCGA	1 cut(s)	408
RsaI	GTAC	1 cut(s)	704
RsaNI	GTAC	1 cut(s)	703
SacI	GAGCTC	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	545
SatI	GCNGC	3 cut(s)	462, 465, 483
Sau3AI	GATC	1 cut(s)	69
Sau96I	GGNCC	1 cut(s)	186
SchI	GAGTC	1 cut(s)	341
ScrFI	CCNGG	2 cut(s)	288, 436
SduI	GDGCHC	2 cut(s)	8, 42
SfaNI	GCATC	1 cut(s)	33
SfcI	CTRYAG	1 cut(s)	312
SfoI	GGCGCC	1 cut(s)	231
SgrAI	CRCCGGYG	1 cut(s)	8
SinI	GGWCC	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	516
SmoI	CTYRAG	1 cut(s)	516
Sse9I	AATT	4 cut(s)	44, 56, 546, 571
SsiI	CCGC	3 cut(s)	383, 627, 648
SspDI	GGCGCC	1 cut(s)	229
SspMI	CTAG	1 cut(s)	674
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	2 cut(s)	286, 434
StyI	CCWWGG	2 cut(s)	182, 300
TaiI	ACGT	1 cut(s)	669
TaqI	TCGA	1 cut(s)	27
TasI	AATT	4 cut(s)	44, 56, 546, 571
Tru1I	TTAA	1 cut(s)	545
Tru9I	TTAA	1 cut(s)	545
TscAI	CASTG	3 cut(s)	172, 316, 450
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	3 cut(s)	461, 464, 482
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	1 cut(s)	417
TspRI	CASTG	3 cut(s)	172, 316, 450
Van91I	CCANNNNNTGG	1 cut(s)	167
VpaK11BI	GGWCC	1 cut(s)	186
VspI	ATTAAT	1 cut(s)	545
XapI	RAATTY	1 cut(s)	571
XceI	RCATGY	1 cut(s)	195
XcmI	CCANNNNNNNNNTGG	2 cut(s)	109, 442
XspI	CTAG	1 cut(s)	674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.