Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0010691

Physical Location & Seq

Genomic Coordinates Forward (+)

43878844 .. 43882739

Gene Structure 3896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG202300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGAGCACCGGCGAGCTTCTCAACATCGAACCCCAAGAGCTCCAATTCCCTTTTGAACTGAAGAAGCAGATCTCGTGCTCTCTGCAACTCTCCAACAAGACCGATGACTATGTGGCTTTTAAGGTAAAGACAACAAATCCCAAAAAGTATTGTGTAAGACCCAACACTGGGGTTGTGTTGCCAAGGTCCACATGTGATGTTATAGTGACTATGCAAGCGCAAAAGGAGAAGCCGTCGGATATGCAATGCAAGGACAAGTTCCTTCTTCAGAGTGTAGTTACCAACCCCGGGGCTACTACCAAGGATATCACCCCAGAGATGTTCAATAAGGAGTCCGGGCATAATGTCGAAGAGTGCAAGTTGAAGGTTAACTATGTTGACCCGCCTAGGCCCCCATCTCCGGTTCGGGAAGGTTCAGAGGAAGGTTCATCACCTAGGGCTTCAGTGGACAATGGGAATTTTAATGATTCTGAGTTCAAAGCTGCTCCAAGAGCTTTTGGCGAGAGACATGAGCCTCAAGATAACTCTGAGGCTAAGACTCTTATTGCGAAGCTGACCGATGAGAGAAATTCTGCTATTCAGCAAAATAATAGGCTTCAACAAGAACTGGTAAGAATGTTTTGTCCATATTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0005829 GO:0005886 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0031224 GO:0031984 GO:0033036 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

211

Amino Acids

23.8

Weight (kDa)

6.2

Isoelectric Point (pI)

53.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	7 - 111	2.7e-33	MSP (Major sperm protein) domain
Cep192_D6	PF22076	7 - 79	3.6e-06	Cep192 domain 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45140 AT2G45140 AT3G60600 AT3G60600
fragaria_vesca	FvH4_7g11090
malus_domestica	MD02G1210500.v1.1 MD07G1115600.v1.1
prunus_persica	Prupe.2G138100_v2.0.a1
pyrus_communis	pycom02g17230 pycom07g10890
rosa_chinensis	RchiOBHm_Chr1g0349111
rosa_laevigata	RLG00000028605
rosa_multiflora	Rmu_sc0008324.1_g000004 Rmu_sc0012100.1_g000006
rosa_roxburghii	Rroxscaffold_4G00306110
rosa_rugosa	Rorug01G0200200
rosa_samantha	Rh1AG217900 Rh1BG183500 Rh1CG202300
rosa_wichuraiana	Rw1G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	383
AcsI	RAATTY	2 cut(s)	457, 568
AcuI	CTGAAG	3 cut(s)	80, 251, 426
AfiI	CCNNNNNNNGG	4 cut(s)	167, 168, 288, 400
AflIII	ACRYGT	1 cut(s)	191
AgsI	TTSAA	5 cut(s)	56, 325, 364, 478, 599
AluBI	AGCT	5 cut(s)	16, 40, 482, 494, 553
AluI	AGCT	5 cut(s)	16, 40, 482, 494, 553
Alw21I	GWGCWC	3 cut(s)	8, 42, 80
Alw26I	GTCTC	1 cut(s)	499
Ama87I	CYCGRG	1 cut(s)	287
AoxI	GGCC	1 cut(s)	389
ApeKI	GCWGC	1 cut(s)	482
ApoI	RAATTY	2 cut(s)	457, 568
AspA2I	CCTAGG	2 cut(s)	386, 434
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	2 cut(s)	186, 390
AsuC2I	CCSGG	3 cut(s)	288, 289, 337
AsuHPI	GGTGA	2 cut(s)	301, 423
AvaI	CYCGRG	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	186
AvrII	CCTAGG	2 cut(s)	386, 434
BanII	GRGCYC	1 cut(s)	42
BauI	CACGAG	1 cut(s)	73
Bbv12I	GWGCWC	3 cut(s)	8, 42, 80
BbvI	GCAGC	1 cut(s)	469
BccI	CCATC	1 cut(s)	403
BceAI	ACGGC	1 cut(s)	217
BcnI	CCSGG	3 cut(s)	288, 289, 337
BcoDI	GTCTC	1 cut(s)	499
BfaI	CTAG	2 cut(s)	387, 435
BglII	AGATCT	1 cut(s)	69
BisI	GCNGC	1 cut(s)	483
BlnI	CCTAGG	2 cut(s)	386, 434
BlsI	GCNGC	1 cut(s)	484
Bme1390I	CCNGG	3 cut(s)	288, 289, 337
Bme18I	GGWCC	1 cut(s)	186
BmeT110I	CYCGRG	1 cut(s)	287
BmgT120I	GGNCC	2 cut(s)	186, 390
BmiI	GGNNCC	1 cut(s)	392
BmrFI	CCNGG	3 cut(s)	288, 289, 337
BmrI	ACTGGG	1 cut(s)	177
BmuI	ACTGGG	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	501
BpuMI	CCSGG	3 cut(s)	288, 289, 337
BsaJI	CCNNGG	7 cut(s)	182, 286, 287, 288, 300, 386, 434
BsaWI	WCCGGW	1 cut(s)	400
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	4 cut(s)	167, 168, 288, 400
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	2 cut(s)	172, 612
Bse3DI	GCAATG	1 cut(s)	251
BseDI	CCNNGG	7 cut(s)	182, 286, 287, 288, 300, 386, 434
BseLI	CCNNNNNNNGG	4 cut(s)	167, 168, 288, 400
BseMI	GCAATG	1 cut(s)	251
BseMII	CTCAG	2 cut(s)	462, 519
BseNI	ACTGG	2 cut(s)	172, 612
BseXI	GCAGC	1 cut(s)	469
BshFI	GGCC	1 cut(s)	391
BsiHKAI	GWGCWC	3 cut(s)	8, 42, 80
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	4 cut(s)	9, 288, 336, 401
BslI	CCNNNNNNNGG	4 cut(s)	167, 168, 288, 400
BsmAI	GTCTC	1 cut(s)	499
BsnI	GGCC	1 cut(s)	391
BsoBI	CYCGRG	1 cut(s)	287
Bsp1286I	GDGCHC	3 cut(s)	8, 42, 80
Bsp143I	GATC	1 cut(s)	69
BspACI	CCGC	1 cut(s)	383
BspANI	GGCC	1 cut(s)	391
BspCNI	CTCAG	2 cut(s)	463, 520
BspLI	GGNNCC	1 cut(s)	392
BsrDI	GCAATG	1 cut(s)	251
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	2 cut(s)	172, 612
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	7 cut(s)	182, 286, 287, 288, 300, 386, 434
BssMI	GATC	1 cut(s)	69
BssSI	CACGAG	1 cut(s)	73
BssT1I	CCWWGG	4 cut(s)	182, 300, 386, 434
Bst2BI	CACGAG	1 cut(s)	73
Bst6I	CTCTTC	1 cut(s)	345
BstC8I	GCNNGC	2 cut(s)	14, 216
BstDEI	CTNAG	3 cut(s)	471, 528, 534
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	1 cut(s)	72
BstMAI	GTCTC	1 cut(s)	499
BstMBI	GATC	1 cut(s)	69
BstMWI	GCNNNNNNNGC	1 cut(s)	491
BstNSI	RCATGY	1 cut(s)	195
BstSCI	CCNGG	3 cut(s)	286, 287, 335
BstV1I	GCAGC	1 cut(s)	469
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	391
BtsIMutI	CAGTG	2 cut(s)	165, 450
Cac8I	GCNNGC	2 cut(s)	14, 216
CfoI	GCGC	1 cut(s)	220
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	2 cut(s)	186, 390
Cfr9I	CCCGGG	1 cut(s)	287
CviAII	CATG	2 cut(s)	192, 509
DdeI	CTNAG	3 cut(s)	471, 528, 534
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Ecl136II	GAGCTC	1 cut(s)	40
Eco130I	CCWWGG	4 cut(s)	182, 300, 386, 434
Eco24I	GRGCYC	1 cut(s)	42
Eco32I	GATATC	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	186
Eco53kI	GAGCTC	1 cut(s)	40
Eco57I	CTGAAG	3 cut(s)	80, 251, 426
Eco88I	CYCGRG	1 cut(s)	287
EcoICRI	GAGCTC	1 cut(s)	40
EcoO109I	RGGNCCY	1 cut(s)	390
EcoRV	GATATC	1 cut(s)	307
EcoT14I	CCWWGG	4 cut(s)	182, 300, 386, 434
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	4 cut(s)	182, 300, 386, 434
FaeI	CATG	2 cut(s)	195, 512
FaiI	YATR	9 cut(s)	111, 193, 203, 212, 242, 342, 375, 510, 628
FatI	CATG	2 cut(s)	191, 508
FauI	CCCGC	1 cut(s)	390
Fnu4HI	GCNGC	1 cut(s)	483
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	1 cut(s)	483
FspBI	CTAG	2 cut(s)	387, 435
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	1 cut(s)	483
HaeIII	GGCC	1 cut(s)	391
HapII	CCGG	4 cut(s)	9, 288, 336, 401
HhaI	GCGC	1 cut(s)	220
Hin1II	CATG	2 cut(s)	195, 512
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HincII	GTYRAC	2 cut(s)	370, 379
HindII	GTYRAC	2 cut(s)	370, 379
HinfI	GANTC	3 cut(s)	332, 467, 538
HpaI	GTTAAC	1 cut(s)	370
HpaII	CCGG	4 cut(s)	9, 288, 336, 401
HphI	GGTGA	2 cut(s)	301, 423
Hpy166II	GTNNAC	4 cut(s)	189, 370, 379, 448
Hpy188I	TCNGA	5 cut(s)	238, 270, 418, 472, 529
Hpy188III	TCNNGA	2 cut(s)	407, 518
Hpy8I	GTNNAC	4 cut(s)	189, 370, 379, 448
Hpy99I	CGWCG	1 cut(s)	238
HpyAV	CCTTC	4 cut(s)	272, 358, 404, 416
HpyCH4V	TGCA	5 cut(s)	85, 214, 244, 249, 357
HpyF10VI	GCNNNNNNNGC	1 cut(s)	491
HpyF3I	CTNAG	3 cut(s)	471, 528, 534
Hsp92II	CATG	2 cut(s)	195, 512
HspAI	GCGC	1 cut(s)	218
KspAI	GTTAAC	1 cut(s)	370
Kzo9I	GATC	1 cut(s)	69
LmnI	GCTCC	2 cut(s)	45, 490
LpnPI	CCDG	7 cut(s)	22, 153, 301, 327, 349, 414, 593
Lsp1109I	GCAGC	1 cut(s)	469
MaeI	CTAG	2 cut(s)	387, 435
MaeIII	GTNAC	2 cut(s)	205, 277
MalI	GATC	1 cut(s)	71
MboI	GATC	1 cut(s)	69
MboII	GAAGA	3 cut(s)	73, 257, 362
MflI	RGATCY	1 cut(s)	69
MhlI	GDGCHC	3 cut(s)	8, 42, 80
MluCI	AATT	3 cut(s)	44, 457, 568
MlyI	GAGTC	2 cut(s)	341, 532
MmeI	TCCRAC	2 cut(s)	117, 216
MnlI	CCTC	3 cut(s)	412, 523, 525
MseI	TTAA	3 cut(s)	120, 369, 462
MspI	CCGG	4 cut(s)	9, 288, 336, 401
MspR9I	CCNGG	3 cut(s)	288, 289, 337
MwoI	GCNNNNNNNGC	1 cut(s)	491
NciI	CCSGG	3 cut(s)	288, 289, 337
NdeII	GATC	1 cut(s)	69
NlaIII	CATG	2 cut(s)	195, 512
NlaIV	GGNNCC	1 cut(s)	392
NmuCI	GTSAC	1 cut(s)	205
NspI	RCATGY	1 cut(s)	195
PciI	ACATGT	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	467
PkrI	GCNGC	1 cut(s)	484
PleI	GAGTC	2 cut(s)	340, 532
PpsI	GAGTC	2 cut(s)	340, 532
PscI	ACATGT	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	392
PspPI	GGNCC	2 cut(s)	186, 390
PsuI	RGATCY	1 cut(s)	69
SacI	GAGCTC	1 cut(s)	42
SaqAI	TTAA	3 cut(s)	120, 369, 462
SatI	GCNGC	1 cut(s)	483
Sau3AI	GATC	1 cut(s)	69
Sau96I	GGNCC	2 cut(s)	186, 390
SchI	GAGTC	2 cut(s)	341, 532
ScrFI	CCNGG	3 cut(s)	288, 289, 337
SduI	GDGCHC	3 cut(s)	8, 42, 80
SgrAI	CRCCGGYG	1 cut(s)	8
SinI	GGWCC	1 cut(s)	186
SmaI	CCCGGG	1 cut(s)	289
SmlI	CTYRAG	1 cut(s)	516
SmoI	CTYRAG	1 cut(s)	516
Sse9I	AATT	3 cut(s)	44, 457, 568
SsiI	CCGC	1 cut(s)	383
SspMI	CTAG	2 cut(s)	387, 435
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	3 cut(s)	286, 287, 335
StyI	CCWWGG	4 cut(s)	182, 300, 386, 434
TaqI	TCGA	2 cut(s)	27, 348
TaqII	GACCGA	2 cut(s)	116, 572
TasI	AATT	3 cut(s)	44, 457, 568
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	3 cut(s)	120, 369, 462
Tru9I	TTAA	3 cut(s)	120, 369, 462
TscAI	CASTG	2 cut(s)	172, 450
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	1 cut(s)	482
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	1 cut(s)	417
TspMI	CCCGGG	1 cut(s)	287
TspRI	CASTG	2 cut(s)	172, 450
VpaK11BI	GGWCC	1 cut(s)	186
XapI	RAATTY	2 cut(s)	457, 568
XceI	RCATGY	1 cut(s)	195
XmaI	CCCGGG	1 cut(s)	287
XmaJI	CCTAGG	2 cut(s)	386, 434
XspI	CTAG	2 cut(s)	387, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.