Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0010691

Physical Location & Seq

Genomic Coordinates Forward (+)

10373954 .. 10377614

Gene Structure 3661 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g11090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAGCACCGGCGAGCTTCTCAACATCGAACCCCAAGAGCTCCAATTCGCATTTGAACTGAAGAAGCAGATCTCGTGCTCTCTGCAACTCTCCAACAAGACCGATGAGTATGTGGCTTTTAAGGTAAAGACAACAAACCCCAAAAAGTATTGTGTTAGACCCAACACTGGGGTTGTGTTGCCGAGGTCCACATGTGATGTTATAGTGACTATGCAAGCGCAAAAGGAGATGCCGTCGGATATGCAATGCAAGGACAAGTTCCTTCTTCAGAGTGTAGTTGCTAGCGCCGGGGCTACCACCAAGGATATCACTCCAGAGATGTTCAATAAGGAGTCGGGGCATAATGTTGAAGAGTGTAAGTTGAAGGTTAACTATGTTGACCCTCCTAGGCCCCCATCTCCGGTTCGGGAAGGTTCAGAGGAAGGTTCATCGCCTAGGGCTTCGGTGGACAATGGGAATTCAAATGATACTGAGTTCAAAGCTGCTTCAAGAGCTTTTGGCGAGAGACATGAGCCTCAAGATAACTCCGAGGCTAAGAGTCTTATTGCAAGGCTGACTGATGAGAAAAATTCTGCTATTCAGCAAAATAATAGGCTTCAGCAAGAACTGGATCTTTTGAGGAGAGAGGCTAACGCAAGCCGCGGCGGTATTGCATTTATTTATGTTGTTATAGTGGGTTTGATTGGCATTATTTTGGGGTACCTTCTGAAGAAGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0005829 GO:0005886 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0031224 GO:0031984 GO:0033036 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

240

Amino Acids

26.5

Weight (kDa)

6.76

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	7 - 110	2.3e-33	MSP (Major sperm protein) domain
Cep192_D6	PF22076	7 - 75	4.6e-06	Cep192 domain 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45140 AT2G45140 AT3G60600 AT3G60600
fragaria_vesca	FvH4_7g11090
malus_domestica	MD02G1210500.v1.1 MD07G1115600.v1.1
prunus_persica	Prupe.2G138100_v2.0.a1
pyrus_communis	pycom02g17230 pycom07g10890
rosa_chinensis	RchiOBHm_Chr1g0349111
rosa_laevigata	RLG00000028605
rosa_multiflora	Rmu_sc0008324.1_g000004 Rmu_sc0012100.1_g000006
rosa_roxburghii	Rroxscaffold_4G00306110
rosa_rugosa	Rorug01G0200200
rosa_samantha	Rh1AG217900 Rh1BG183500 Rh1CG202300
rosa_wichuraiana	Rw1G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	699
AccB1I	GGYRCC	1 cut(s)	699
AccII	CGCG	1 cut(s)	642
AciI	CCGC	3 cut(s)	640, 642, 645
AclWI	GGATC	1 cut(s)	618
AcsI	RAATTY	2 cut(s)	457, 568
AcuI	CTGAAG	3 cut(s)	80, 251, 581
AfaI	GTAC	1 cut(s)	701
AfiI	CCNNNNNNNGG	3 cut(s)	167, 168, 400
AflIII	ACRYGT	1 cut(s)	191
AgsI	TTSAA	7 cut(s)	56, 325, 350, 364, 462, 478, 489
AluBI	AGCT	4 cut(s)	16, 40, 482, 494
AluI	AGCT	4 cut(s)	16, 40, 482, 494
Alw21I	GWGCWC	3 cut(s)	8, 42, 80
Alw26I	GTCTC	1 cut(s)	499
AlwI	GGATC	1 cut(s)	618
AoxI	GGCC	1 cut(s)	389
ApeKI	GCWGC	1 cut(s)	482
ApoI	RAATTY	2 cut(s)	457, 568
Asp718I	GGTACC	1 cut(s)	699
AspA2I	CCTAGG	2 cut(s)	386, 434
AspLEI	GCGC	2 cut(s)	220, 287
AspS9I	GGNCC	2 cut(s)	186, 390
AsuC2I	CCSGG	1 cut(s)	289
AsuNHI	GCTAGC	1 cut(s)	281
AvaII	GGWCC	1 cut(s)	186
AvrII	CCTAGG	2 cut(s)	386, 434
BanI	GGYRCC	1 cut(s)	699
BanII	GRGCYC	1 cut(s)	42
BauI	CACGAG	1 cut(s)	73
Bbv12I	GWGCWC	3 cut(s)	8, 42, 80
BbvI	GCAGC	1 cut(s)	469
BccI	CCATC	1 cut(s)	403
BceAI	ACGGC	1 cut(s)	217
BcnI	CCSGG	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	499
BfaI	CTAG	3 cut(s)	282, 387, 435
BfoI	RGCGCY	1 cut(s)	288
BglII	AGATCT	1 cut(s)	69
BisI	GCNGC	3 cut(s)	483, 640, 643
BlnI	CCTAGG	2 cut(s)	386, 434
BlsI	GCNGC	3 cut(s)	484, 641, 644
Bme1390I	CCNGG	1 cut(s)	289
Bme18I	GGWCC	1 cut(s)	186
BmgT120I	GGNCC	2 cut(s)	186, 390
BmiI	GGNNCC	2 cut(s)	392, 701
BmrFI	CCNGG	1 cut(s)	289
BmrI	ACTGGG	1 cut(s)	177
BmsI	GCATC	1 cut(s)	219
BmtI	GCTAGC	1 cut(s)	285
BmuI	ACTGGG	1 cut(s)	177
BpmI	CTGGAG	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	501
BpuMI	CCSGG	1 cut(s)	289
BsaJI	CCNNGG	7 cut(s)	182, 288, 300, 386, 434, 528, 640
BsaWI	WCCGGW	1 cut(s)	400
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	3 cut(s)	167, 168, 400
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	2 cut(s)	172, 612
Bse3DI	GCAATG	1 cut(s)	251
BseDI	CCNNGG	7 cut(s)	182, 288, 300, 386, 434, 528, 640
BseLI	CCNNNNNNNGG	3 cut(s)	167, 168, 400
BseMI	GCAATG	1 cut(s)	251
BseMII	CTCAG	1 cut(s)	462
BseNI	ACTGG	2 cut(s)	172, 612
BseRI	GAGGAG	1 cut(s)	634
BseXI	GCAGC	1 cut(s)	469
Bsh1236I	CGCG	1 cut(s)	642
BshFI	GGCC	1 cut(s)	391
BshNI	GGYRCC	1 cut(s)	699
BsiHKAI	GWGCWC	3 cut(s)	8, 42, 80
BsiSI	CCGG	3 cut(s)	9, 288, 401
BslI	CCNNNNNNNGG	3 cut(s)	167, 168, 400
BsmAI	GTCTC	1 cut(s)	499
BsnI	GGCC	1 cut(s)	391
Bsp1286I	GDGCHC	3 cut(s)	8, 42, 80
Bsp143I	GATC	2 cut(s)	69, 610
BspACI	CCGC	3 cut(s)	640, 642, 645
BspANI	GGCC	1 cut(s)	391
BspCNI	CTCAG	1 cut(s)	463
BspFNI	CGCG	1 cut(s)	642
BspLI	GGNNCC	2 cut(s)	392, 701
BspOI	GCTAGC	1 cut(s)	285
BspPI	GGATC	1 cut(s)	618
BspT107I	GGYRCC	1 cut(s)	699
BsrDI	GCAATG	1 cut(s)	251
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	2 cut(s)	172, 612
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	7 cut(s)	182, 288, 300, 386, 434, 528, 640
BssMI	GATC	2 cut(s)	69, 610
BssSI	CACGAG	1 cut(s)	73
BssT1I	CCWWGG	3 cut(s)	300, 386, 434
Bst2BI	CACGAG	1 cut(s)	73
Bst6I	CTCTTC	1 cut(s)	345
BstC8I	GCNNGC	4 cut(s)	14, 216, 283, 637
BstDEI	CTNAG	2 cut(s)	471, 534
BstDSI	CCRYGG	1 cut(s)	640
BstFNI	CGCG	1 cut(s)	642
BstH2I	RGCGCY	1 cut(s)	288
BstHHI	GCGC	2 cut(s)	220, 287
BstKTI	GATC	2 cut(s)	72, 613
BstMAI	GTCTC	1 cut(s)	499
BstMBI	GATC	2 cut(s)	69, 610
BstMWI	GCNNNNNNNGC	1 cut(s)	491
BstNSI	RCATGY	1 cut(s)	195
BstSCI	CCNGG	1 cut(s)	287
BstUI	CGCG	1 cut(s)	642
BstV1I	GCAGC	1 cut(s)	469
BstX2I	RGATCY	2 cut(s)	69, 610
BstYI	RGATCY	2 cut(s)	69, 610
BsuRI	GGCC	1 cut(s)	391
BtgI	CCRYGG	1 cut(s)	640
BtgZI	GCGATG	1 cut(s)	414
BtsIMutI	CAGTG	1 cut(s)	165
Cac8I	GCNNGC	4 cut(s)	14, 216, 283, 637
CfoI	GCGC	2 cut(s)	220, 287
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	2 cut(s)	186, 390
Cfr42I	CCGCGG	1 cut(s)	643
Csp6I	GTAC	1 cut(s)	700
CviAII	CATG	3 cut(s)	192, 509, 717
CviQI	GTAC	1 cut(s)	700
DdeI	CTNAG	2 cut(s)	471, 534
DpnI	GATC	2 cut(s)	71, 612
DpnII	GATC	2 cut(s)	69, 610
Eam1104I	CTCTTC	1 cut(s)	345
EarI	CTCTTC	1 cut(s)	345
Ecl136II	GAGCTC	1 cut(s)	40
Eco130I	CCWWGG	3 cut(s)	300, 386, 434
Eco24I	GRGCYC	1 cut(s)	42
Eco32I	GATATC	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	186
Eco53kI	GAGCTC	1 cut(s)	40
Eco57I	CTGAAG	3 cut(s)	80, 251, 581
EcoICRI	GAGCTC	1 cut(s)	40
EcoO109I	RGGNCCY	1 cut(s)	390
EcoRI	GAATTC	1 cut(s)	457
EcoRV	GATATC	1 cut(s)	307
EcoT14I	CCWWGG	3 cut(s)	300, 386, 434
EcoT38I	GRGCYC	1 cut(s)	42
ErhI	CCWWGG	3 cut(s)	300, 386, 434
FaeI	CATG	3 cut(s)	195, 512, 720
FatI	CATG	3 cut(s)	191, 508, 716
Fnu4HI	GCNGC	3 cut(s)	483, 640, 643
FriOI	GRGCYC	1 cut(s)	42
Fsp4HI	GCNGC	3 cut(s)	483, 640, 643
FspBI	CTAG	3 cut(s)	282, 387, 435
GlaI	GCGC	2 cut(s)	219, 286
GluI	GCNGC	3 cut(s)	483, 640, 643
GsuI	CTGGAG	1 cut(s)	297
HaeII	RGCGCY	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	391
HapII	CCGG	3 cut(s)	9, 288, 401
HhaI	GCGC	2 cut(s)	220, 287
Hin1II	CATG	3 cut(s)	195, 512, 720
Hin6I	GCGC	2 cut(s)	218, 285
HinP1I	GCGC	2 cut(s)	218, 285
HincII	GTYRAC	2 cut(s)	370, 379
HindII	GTYRAC	2 cut(s)	370, 379
HinfI	GANTC	2 cut(s)	332, 538
HpaI	GTTAAC	1 cut(s)	370
HpaII	CCGG	3 cut(s)	9, 288, 401
Hpy166II	GTNNAC	4 cut(s)	189, 370, 379, 448
Hpy188I	TCNGA	5 cut(s)	238, 270, 418, 529, 708
Hpy188III	TCNNGA	4 cut(s)	314, 407, 489, 518
Hpy8I	GTNNAC	4 cut(s)	189, 370, 379, 448
Hpy99I	CGWCG	1 cut(s)	238
HpyAV	CCTTC	5 cut(s)	272, 358, 404, 416, 713
HpyCH4V	TGCA	6 cut(s)	85, 214, 244, 249, 548, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	491
HpyF3I	CTNAG	2 cut(s)	471, 534
Hsp92II	CATG	3 cut(s)	195, 512, 720
HspAI	GCGC	2 cut(s)	218, 285
KpnI	GGTACC	1 cut(s)	703
KspAI	GTTAAC	1 cut(s)	370
KspI	CCGCGG	1 cut(s)	643
Kzo9I	GATC	2 cut(s)	69, 610
LmnI	GCTCC	1 cut(s)	45
LpnPI	CCDG	6 cut(s)	22, 153, 301, 327, 414, 593
Lsp1109I	GCAGC	1 cut(s)	469
LweI	GCATC	1 cut(s)	219
MaeI	CTAG	3 cut(s)	282, 387, 435
MaeIII	GTNAC	1 cut(s)	205
MalI	GATC	2 cut(s)	71, 612
MboI	GATC	2 cut(s)	69, 610
MboII	GAAGA	3 cut(s)	73, 257, 362
MflI	RGATCY	2 cut(s)	69, 610
MhlI	GDGCHC	3 cut(s)	8, 42, 80
MluCI	AATT	3 cut(s)	44, 457, 568
MlyI	GAGTC	2 cut(s)	341, 547
MmeI	TCCRAC	2 cut(s)	117, 216
MnlI	CCTC	7 cut(s)	177, 393, 412, 523, 525, 612, 619
MseI	TTAA	2 cut(s)	120, 369
MspA1I	CMGCKG	1 cut(s)	642
MspI	CCGG	3 cut(s)	9, 288, 401
MspR9I	CCNGG	1 cut(s)	289
MvnI	CGCG	1 cut(s)	642
MwoI	GCNNNNNNNGC	1 cut(s)	491
NciI	CCSGG	1 cut(s)	289
NdeII	GATC	2 cut(s)	69, 610
NheI	GCTAGC	1 cut(s)	281
NlaIII	CATG	3 cut(s)	195, 512, 720
NlaIV	GGNNCC	2 cut(s)	392, 701
NmeAIII	GCCGAG	1 cut(s)	207
NmuCI	GTSAC	1 cut(s)	205
NspI	RCATGY	1 cut(s)	195
PciI	ACATGT	1 cut(s)	191
PkrI	GCNGC	3 cut(s)	484, 641, 644
PleI	GAGTC	2 cut(s)	340, 546
PpsI	GAGTC	2 cut(s)	340, 546
PscI	ACATGT	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	42
PspN4I	GGNNCC	2 cut(s)	392, 701
PspPI	GGNCC	2 cut(s)	186, 390
PsuI	RGATCY	2 cut(s)	69, 610
RsaI	GTAC	1 cut(s)	701
RsaNI	GTAC	1 cut(s)	700
SacI	GAGCTC	1 cut(s)	42
SacII	CCGCGG	1 cut(s)	643
SaqAI	TTAA	2 cut(s)	120, 369
SatI	GCNGC	3 cut(s)	483, 640, 643
Sau3AI	GATC	2 cut(s)	69, 610
Sau96I	GGNCC	2 cut(s)	186, 390
SchI	GAGTC	2 cut(s)	341, 547
ScrFI	CCNGG	1 cut(s)	289
SduI	GDGCHC	3 cut(s)	8, 42, 80
SfaNI	GCATC	1 cut(s)	219
Sfr303I	CCGCGG	1 cut(s)	643
SgrAI	CRCCGGYG	1 cut(s)	8
SgrBI	CCGCGG	1 cut(s)	643
SinI	GGWCC	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	516
SmoI	CTYRAG	1 cut(s)	516
Sse9I	AATT	3 cut(s)	44, 457, 568
SsiI	CCGC	3 cut(s)	640, 642, 645
SspMI	CTAG	3 cut(s)	282, 387, 435
SstI	GAGCTC	1 cut(s)	42
StyD4I	CCNGG	1 cut(s)	287
StyI	CCWWGG	3 cut(s)	300, 386, 434
TaqI	TCGA	1 cut(s)	27
TaqII	GACCGA	1 cut(s)	116
TasI	AATT	3 cut(s)	44, 457, 568
TauI	GCSGC	2 cut(s)	642, 645
Tru1I	TTAA	2 cut(s)	120, 369
Tru9I	TTAA	2 cut(s)	120, 369
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	1 cut(s)	205
TseI	GCWGC	1 cut(s)	482
Tsp45I	GTSAC	1 cut(s)	205
TspDTI	ATGAA	1 cut(s)	417
TspRI	CASTG	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	186
XapI	RAATTY	2 cut(s)	457, 568
XceI	RCATGY	1 cut(s)	195
XmaJI	CCTAGG	2 cut(s)	386, 434
XspI	CTAG	3 cut(s)	282, 387, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.