Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0010691

Physical Location & Seq

Genomic Coordinates Reverse (-)

24954246 .. 24957978

Gene Structure 3733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028605

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCAAGCGCAAAAGGAGAAGCCGTCGGATATGCAATGCAAGGACAAGTTCCTTCTTCAGAGTGTAGTTGCCAGCCCCGGGGCTACTACCAAGGATATCACCCCAGAGATGTTCAATAAGGAGTCTGGGCATAATGTCGAAGAGTGTAAGTTGAAGGTTAACTATGTTGACCCGCCTAGGCCCCCATCTCCGGTTCGGGAAGGTTCGGAGGAAGGTTCATCACCTAGGGCTTCAGTGGACAATGGGAATTTTAATGATTCTGAGTTCAAAGCTGCTCCAAGAGCTTTTGGCGAGAGACATGAGCCTCAAGATAACTCTGAGGCTAGGACTCTTATTGCGAAGCTGACCGAGGAGAAATATTCTGCTATTCAACAAAATAATAGGCTTCAACAAGAACTGGATCTTTTGAGGAGAGAGGCCAACACAAGCCGTGGTGGTATTGCATTTATATATGTTGTTATAGTGGGTTTGATTGGCATTATTTTGGGGTACATTCTAAAGAAGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0005829 GO:0005886 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0031224 GO:0031984 GO:0033036 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

170

Amino Acids

18.81

Weight (kDa)

6.18

Isoelectric Point (pI)

53.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45140 AT2G45140 AT3G60600 AT3G60600
fragaria_vesca	FvH4_7g11090
malus_domestica	MD02G1210500.v1.1 MD07G1115600.v1.1
prunus_persica	Prupe.2G138100_v2.0.a1
pyrus_communis	pycom02g17230 pycom07g10890
rosa_chinensis	RchiOBHm_Chr1g0349111
rosa_laevigata	RLG00000028605
rosa_multiflora	Rmu_sc0008324.1_g000004 Rmu_sc0012100.1_g000006
rosa_roxburghii	Rroxscaffold_4G00306110
rosa_rugosa	Rorug01G0200200
rosa_samantha	Rh1AG217900 Rh1BG183500 Rh1CG202300
rosa_wichuraiana	Rw1G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	173
AclWI	GGATC	1 cut(s)	408
AcsI	RAATTY	1 cut(s)	247
AcuI	CTGAAG	2 cut(s)	41, 216
AfaI	GTAC	1 cut(s)	491
AfiI	CCNNNNNNNGG	2 cut(s)	78, 190
AgsI	TTSAA	5 cut(s)	115, 154, 268, 371, 389
AluBI	AGCT	3 cut(s)	272, 284, 343
AluI	AGCT	3 cut(s)	272, 284, 343
Alw26I	GTCTC	1 cut(s)	289
AlwI	GGATC	1 cut(s)	408
Ama87I	CYCGRG	1 cut(s)	77
AoxI	GGCC	2 cut(s)	179, 417
ApeKI	GCWGC	1 cut(s)	272
ApoI	RAATTY	1 cut(s)	247
AspA2I	CCTAGG	2 cut(s)	176, 224
AspLEI	GCGC	1 cut(s)	10
AspS9I	GGNCC	1 cut(s)	180
AsuC2I	CCSGG	2 cut(s)	78, 79
AsuHPI	GGTGA	2 cut(s)	91, 213
AvaI	CYCGRG	1 cut(s)	77
AvrII	CCTAGG	2 cut(s)	176, 224
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	1 cut(s)	193
BceAI	ACGGC	2 cut(s)	7, 414
BcnI	CCSGG	2 cut(s)	78, 79
BcoDI	GTCTC	1 cut(s)	289
BfaI	CTAG	3 cut(s)	177, 225, 324
BisI	GCNGC	1 cut(s)	273
BlnI	CCTAGG	2 cut(s)	176, 224
BlsI	GCNGC	1 cut(s)	274
Bme1390I	CCNGG	2 cut(s)	78, 79
BmeT110I	CYCGRG	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	180
BmiI	GGNNCC	1 cut(s)	182
BmrFI	CCNGG	2 cut(s)	78, 79
BpuEI	CTTGAG	1 cut(s)	291
BpuMI	CCSGG	2 cut(s)	78, 79
BsaJI	CCNNGG	8 cut(s)	76, 77, 78, 90, 176, 224, 348, 430
BsaWI	WCCGGW	1 cut(s)	190
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	2 cut(s)	78, 190
Bse1I	ACTGG	1 cut(s)	402
Bse3DI	GCAATG	1 cut(s)	41
BseDI	CCNNGG	8 cut(s)	76, 77, 78, 90, 176, 224, 348, 430
BseLI	CCNNNNNNNGG	2 cut(s)	78, 190
BseMI	GCAATG	1 cut(s)	41
BseMII	CTCAG	2 cut(s)	252, 309
BseNI	ACTGG	1 cut(s)	402
BseRI	GAGGAG	2 cut(s)	365, 424
BseXI	GCAGC	1 cut(s)	259
BshFI	GGCC	2 cut(s)	181, 419
BsiHKCI	CYCGRG	1 cut(s)	77
BsiSI	CCGG	2 cut(s)	78, 191
BslI	CCNNNNNNNGG	2 cut(s)	78, 190
BsmAI	GTCTC	1 cut(s)	289
BsnI	GGCC	2 cut(s)	181, 419
BsoBI	CYCGRG	1 cut(s)	77
Bsp143I	GATC	1 cut(s)	400
BspACI	CCGC	1 cut(s)	173
BspANI	GGCC	2 cut(s)	181, 419
BspCNI	CTCAG	2 cut(s)	253, 310
BspLI	GGNNCC	1 cut(s)	182
BspPI	GGATC	1 cut(s)	408
BsrDI	GCAATG	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	402
BssECI	CCNNGG	8 cut(s)	76, 77, 78, 90, 176, 224, 348, 430
BssMI	GATC	1 cut(s)	400
BssT1I	CCWWGG	3 cut(s)	90, 176, 224
Bst6I	CTCTTC	1 cut(s)	135
BstC8I	GCNNGC	2 cut(s)	6, 73
BstDEI	CTNAG	2 cut(s)	261, 318
BstDSI	CCRYGG	1 cut(s)	430
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	1 cut(s)	403
BstMAI	GTCTC	1 cut(s)	289
BstMBI	GATC	1 cut(s)	400
BstMWI	GCNNNNNNNGC	1 cut(s)	281
BstSCI	CCNGG	2 cut(s)	76, 77
BstV1I	GCAGC	1 cut(s)	259
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BsuRI	GGCC	2 cut(s)	181, 419
BtgI	CCRYGG	1 cut(s)	430
BtsIMutI	CAGTG	1 cut(s)	240
Cac8I	GCNNGC	2 cut(s)	6, 73
CfoI	GCGC	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	180
Cfr9I	CCCGGG	1 cut(s)	77
Csp6I	GTAC	1 cut(s)	490
CviAII	CATG	2 cut(s)	299, 507
CviQI	GTAC	1 cut(s)	490
DdeI	CTNAG	2 cut(s)	261, 318
DpnI	GATC	1 cut(s)	402
DpnII	GATC	1 cut(s)	400
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Eco130I	CCWWGG	3 cut(s)	90, 176, 224
Eco32I	GATATC	1 cut(s)	97
Eco57I	CTGAAG	2 cut(s)	41, 216
Eco88I	CYCGRG	1 cut(s)	77
EcoO109I	RGGNCCY	1 cut(s)	180
EcoRV	GATATC	1 cut(s)	97
EcoT14I	CCWWGG	3 cut(s)	90, 176, 224
ErhI	CCWWGG	3 cut(s)	90, 176, 224
FaeI	CATG	2 cut(s)	302, 510
FaiI	YATR	9 cut(s)	32, 132, 165, 300, 449, 451, 453, 461, 508
FatI	CATG	2 cut(s)	298, 506
FauI	CCCGC	1 cut(s)	180
Fnu4HI	GCNGC	1 cut(s)	273
Fsp4HI	GCNGC	1 cut(s)	273
FspBI	CTAG	3 cut(s)	177, 225, 324
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	1 cut(s)	273
HaeIII	GGCC	2 cut(s)	181, 419
HapII	CCGG	2 cut(s)	78, 191
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	2 cut(s)	302, 510
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HincII	GTYRAC	2 cut(s)	160, 169
HindII	GTYRAC	2 cut(s)	160, 169
HinfI	GANTC	3 cut(s)	122, 257, 328
HpaI	GTTAAC	1 cut(s)	160
HpaII	CCGG	2 cut(s)	78, 191
HphI	GGTGA	2 cut(s)	91, 213
Hpy166II	GTNNAC	3 cut(s)	160, 169, 238
Hpy188I	TCNGA	5 cut(s)	28, 60, 208, 262, 319
Hpy188III	TCNNGA	2 cut(s)	197, 308
Hpy8I	GTNNAC	3 cut(s)	160, 169, 238
Hpy99I	CGWCG	1 cut(s)	28
HpyAV	CCTTC	4 cut(s)	62, 148, 194, 206
HpyCH4V	TGCA	4 cut(s)	4, 34, 39, 443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	281
HpyF3I	CTNAG	2 cut(s)	261, 318
Hsp92II	CATG	2 cut(s)	302, 510
HspAI	GCGC	1 cut(s)	8
KspAI	GTTAAC	1 cut(s)	160
Kzo9I	GATC	1 cut(s)	400
LmnI	GCTCC	1 cut(s)	280
LpnPI	CCDG	6 cut(s)	85, 91, 111, 117, 204, 383
Lsp1109I	GCAGC	1 cut(s)	259
MaeI	CTAG	3 cut(s)	177, 225, 324
MalI	GATC	1 cut(s)	402
MboI	GATC	1 cut(s)	400
MboII	GAAGA	2 cut(s)	47, 152
MflI	RGATCY	1 cut(s)	400
MluCI	AATT	1 cut(s)	247
MlyI	GAGTC	2 cut(s)	131, 322
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	6 cut(s)	202, 313, 315, 343, 402, 409
MseI	TTAA	2 cut(s)	159, 252
MspI	CCGG	2 cut(s)	78, 191
MspR9I	CCNGG	2 cut(s)	78, 79
MwoI	GCNNNNNNNGC	1 cut(s)	281
NciI	CCSGG	2 cut(s)	78, 79
NdeII	GATC	1 cut(s)	400
NlaIII	CATG	2 cut(s)	302, 510
NlaIV	GGNNCC	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	257
PkrI	GCNGC	1 cut(s)	274
PleI	GAGTC	2 cut(s)	130, 322
PpsI	GAGTC	2 cut(s)	130, 322
PspN4I	GGNNCC	1 cut(s)	182
PspPI	GGNCC	1 cut(s)	180
PsuI	RGATCY	1 cut(s)	400
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
SaqAI	TTAA	2 cut(s)	159, 252
SatI	GCNGC	1 cut(s)	273
Sau3AI	GATC	1 cut(s)	400
Sau96I	GGNCC	1 cut(s)	180
SchI	GAGTC	2 cut(s)	131, 322
ScrFI	CCNGG	2 cut(s)	78, 79
SetI	ASST	7 cut(s)	159, 205, 217, 226, 274, 286, 345
SmaI	CCCGGG	1 cut(s)	79
SmlI	CTYRAG	1 cut(s)	306
SmoI	CTYRAG	1 cut(s)	306
Sse9I	AATT	1 cut(s)	247
SsiI	CCGC	1 cut(s)	173
SspI	AATATT	1 cut(s)	359
SspMI	CTAG	3 cut(s)	177, 225, 324
StyD4I	CCNGG	2 cut(s)	76, 77
StyI	CCWWGG	3 cut(s)	90, 176, 224
TaqI	TCGA	1 cut(s)	138
TaqII	GACCGA	1 cut(s)	362
TasI	AATT	1 cut(s)	247
TfiI	GAWTC	1 cut(s)	257
Tru1I	TTAA	2 cut(s)	159, 252
Tru9I	TTAA	2 cut(s)	159, 252
TscAI	CASTG	1 cut(s)	240
TseI	GCWGC	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	207
TspMI	CCCGGG	1 cut(s)	77
TspRI	CASTG	1 cut(s)	240
XapI	RAATTY	1 cut(s)	247
XmaI	CCCGGG	1 cut(s)	77
XmaJI	CCTAGG	2 cut(s)	176, 224
XspI	CTAG	3 cut(s)	177, 225, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.