Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010691

Physical Location & Seq

Genomic Coordinates Forward (+)

22400110 .. 22402724

Gene Structure 2615 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G60600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAGTAACATCGATCTGATTGGGATGAGTAACCGCGATCTGATCGGGATGAGTAACAGCGAGCTTCTCACCGTCGAGCCTCTCGATCTTCAATTCCCTTTTGAATTGAAGAAGCAGATCTCTTGCTCTCTCTATTTGACGAACAAGACCGACAATAATGTTGCCTTTAAGGTTAAGACGACGAATCCGAAAAAGTATTGTGTTAGGCCTAATACTGGAGTTGTTCTCCCGAGGTCTACTTGCGAAGTTCTTGTGACCATGCAAGCTCAAAAGGAAGCTCCTTCCGATATGCAGTGCAAGGACAAGTTTCTGCTTCAAGGTGTGATAGCTAGTCCTGGTGTCACAGCCAAGGAAGTTACTCCTGAGATGTTTAGCAAAGAGGCTGGACATCGAGTTGAGGAAACTAAACTGAGAGTTACTTATGTTGCTCCACCACGACCACCATCACCGGTTCACGAAGGATCTGAAGAGGGTTCTTCACCCAGGGCTTCTGTCTCAGATAATGGACATGGTTCTGAATTTTCGTTTGAGAGATTTATCGTGGACAACAAGGCTGGACATCAAGAAAACACATCTGAGGCGAGGGCACTCATTACCAAGCTAACCGAAGAAAAACAGTCTGCCATTCAACTGAACAACAGACTTCAAAGAGAACTGGATCAGTTAAGGCGTGAAAGCAAAAAGAGCCAAAGTGGTGGTATCCCATTCATGTACGTTCTTTTGGTCGGACTCATCGGTCTAATTTTGGGATACATTATGAAGAGGACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0005829 GO:0005886 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0031224 GO:0031984 GO:0033036 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

256

Amino Acids

28.47

Weight (kDa)

8.59

Isoelectric Point (pI)

53.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Motile_Sperm	PF00635	23 - 128	2.3e-32	MSP (Major sperm protein) domain
Cep192_D6	PF22076	23 - 93	1.5e-06	Cep192 domain 6

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45140 AT2G45140 AT3G60600 AT3G60600
fragaria_vesca	FvH4_7g11090
malus_domestica	MD02G1210500.v1.1 MD07G1115600.v1.1
prunus_persica	Prupe.2G138100_v2.0.a1
pyrus_communis	pycom02g17230 pycom07g10890
rosa_chinensis	RchiOBHm_Chr1g0349111
rosa_laevigata	RLG00000028605
rosa_multiflora	Rmu_sc0008324.1_g000004 Rmu_sc0012100.1_g000006
rosa_roxburghii	Rroxscaffold_4G00306110
rosa_rugosa	Rorug01G0200200
rosa_samantha	Rh1AG217900 Rh1BG183500 Rh1CG202300
rosa_wichuraiana	Rw1G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	735
AccI	GTMKAC	1 cut(s)	236
AccII	CGCG	1 cut(s)	36
AciI	CCGC	1 cut(s)	34
AclWI	GGATC	2 cut(s)	469, 666
AcsI	RAATTY	1 cut(s)	518
AcuI	CTGAAG	1 cut(s)	486
AfaI	GTAC	1 cut(s)	713
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgeI	ACCGGT	1 cut(s)	448
AgsI	TTSAA	6 cut(s)	92, 104, 109, 317, 629, 647
AjnI	CCWGG	2 cut(s)	334, 482
AluBI	AGCT	5 cut(s)	64, 266, 278, 329, 601
AluI	AGCT	5 cut(s)	64, 266, 278, 329, 601
Alw26I	GTCTC	1 cut(s)	499
AlwI	GGATC	2 cut(s)	469, 666
Ama87I	CYCGRG	1 cut(s)	229
AoxI	GGCC	1 cut(s)	206
ApoI	RAATTY	1 cut(s)	518
AsiGI	ACCGGT	1 cut(s)	448
AsuHPI	GGTGA	3 cut(s)	61, 438, 471
AvaI	CYCGRG	1 cut(s)	229
BaeGI	GKGCMC	1 cut(s)	589
BccI	CCATC	1 cut(s)	451
BciT130I	CCWGG	2 cut(s)	336, 484
BciVI	GTATCC	2 cut(s)	710, 743
BcoDI	GTCTC	1 cut(s)	499
BfaI	CTAG	1 cut(s)	330
BfuI	GTATCC	2 cut(s)	710, 743
BglII	AGATCT	1 cut(s)	117
Bme1390I	CCNGG	2 cut(s)	336, 484
BmeT110I	CYCGRG	1 cut(s)	229
BmrFI	CCNGG	2 cut(s)	336, 484
BplI	GAGNNNNNCTC	2 cut(s)	210, 242
BpmI	CTGGAG	1 cut(s)	237
Bsa29I	ATCGAT	1 cut(s)	12
BsaJI	CCNNGG	4 cut(s)	230, 348, 482, 483
BsaWI	WCCGGW	1 cut(s)	448
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse118I	RCCGGY	1 cut(s)	448
Bse1I	ACTGG	2 cut(s)	220, 660
BseBI	CCWGG	2 cut(s)	336, 484
BseCI	ATCGAT	1 cut(s)	12
BseDI	CCNNGG	4 cut(s)	230, 348, 482, 483
BseGI	GGATG	2 cut(s)	30, 54
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseMII	CTCAG	4 cut(s)	354, 401, 510, 567
BseNI	ACTGG	2 cut(s)	220, 660
BseSI	GKGCMC	1 cut(s)	589
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	208
BshTI	ACCGGT	1 cut(s)	448
BshVI	ATCGAT	1 cut(s)	12
BsiHKCI	CYCGRG	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	449
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	499
BsnI	GGCC	1 cut(s)	208
BsoBI	CYCGRG	1 cut(s)	229
Bsp1286I	GDGCHC	1 cut(s)	589
Bsp143I	GATC	7 cut(s)	13, 37, 42, 85, 117, 461, 658
BspACI	CCGC	1 cut(s)	34
BspANI	GGCC	1 cut(s)	208
BspCNI	CTCAG	4 cut(s)	355, 402, 509, 568
BspDI	ATCGAT	1 cut(s)	12
BspFNI	CGCG	1 cut(s)	36
BspPI	GGATC	2 cut(s)	469, 666
BsrFI	RCCGGY	1 cut(s)	448
BsrI	ACTGG	2 cut(s)	220, 660
BssAI	RCCGGY	1 cut(s)	448
BssECI	CCNNGG	4 cut(s)	230, 348, 482, 483
BssMI	GATC	7 cut(s)	13, 37, 42, 85, 117, 461, 658
BssT1I	CCWWGG	1 cut(s)	348
Bst2UI	CCWGG	2 cut(s)	336, 484
Bst4CI	ACNGT	2 cut(s)	73, 618
Bst6I	CTCTTC	2 cut(s)	462, 755
BstC8I	GCNNGC	2 cut(s)	62, 264
BstDEI	CTNAG	4 cut(s)	363, 410, 496, 576
BstF5I	GGATG	2 cut(s)	30, 54
BstFNI	CGCG	1 cut(s)	36
BstKTI	GATC	7 cut(s)	16, 40, 45, 88, 120, 464, 661
BstMAI	GTCTC	1 cut(s)	499
BstMBI	GATC	7 cut(s)	13, 37, 42, 85, 117, 461, 658
BstMWI	GCNNNNNNNGC	1 cut(s)	684
BstNI	CCWGG	2 cut(s)	336, 484
BstSCI	CCNGG	2 cut(s)	334, 482
BstSLI	GKGCMC	1 cut(s)	589
BstUI	CGCG	1 cut(s)	36
BstX2I	RGATCY	2 cut(s)	117, 461
BstXI	CCANNNNNNTGG	1 cut(s)	695
BstYI	RGATCY	2 cut(s)	117, 461
Bsu15I	ATCGAT	1 cut(s)	12
BsuI	GTATCC	2 cut(s)	710, 743
BsuRI	GGCC	1 cut(s)	208
BsuTUI	ATCGAT	1 cut(s)	12
BtsCI	GGATG	2 cut(s)	30, 54
BtsI	GCAGTG	1 cut(s)	299
BtsIMutI	CAGTG	1 cut(s)	299
Cac8I	GCNNGC	2 cut(s)	62, 264
Cfr10I	RCCGGY	1 cut(s)	448
ClaI	ATCGAT	1 cut(s)	12
Csp6I	GTAC	1 cut(s)	712
CspAI	ACCGGT	1 cut(s)	448
CviAII	CATG	3 cut(s)	259, 509, 709
CviQI	GTAC	1 cut(s)	712
DdeI	CTNAG	4 cut(s)	363, 410, 496, 576
DpnI	GATC	7 cut(s)	15, 39, 44, 87, 119, 463, 660
DpnII	GATC	7 cut(s)	13, 37, 42, 85, 117, 461, 658
DrdI	GACNNNNNNGTC	1 cut(s)	735
DseDI	GACNNNNNNGTC	1 cut(s)	735
Eam1104I	CTCTTC	2 cut(s)	462, 755
EarI	CTCTTC	2 cut(s)	462, 755
Eco130I	CCWWGG	1 cut(s)	348
Eco147I	AGGCCT	1 cut(s)	208
Eco57I	CTGAAG	1 cut(s)	486
Eco88I	CYCGRG	1 cut(s)	229
EcoRII	CCWGG	2 cut(s)	334, 482
EcoT14I	CCWWGG	1 cut(s)	348
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	3 cut(s)	262, 512, 712
FaiI	YATR	7 cut(s)	260, 290, 423, 510, 710, 758, 769
FatI	CATG	3 cut(s)	258, 508, 708
FblI	GTMKAC	1 cut(s)	236
FokI	GGATG	2 cut(s)	37, 61
FspBI	CTAG	1 cut(s)	330
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	1 cut(s)	208
HapII	CCGG	1 cut(s)	449
Hin1II	CATG	3 cut(s)	262, 512, 712
HinfI	GANTC	2 cut(s)	184, 729
HpaII	CCGG	1 cut(s)	449
HphI	GGTGA	3 cut(s)	61, 438, 471
Hpy166II	GTNNAC	3 cut(s)	237, 454, 544
Hpy188I	TCNGA	9 cut(s)	18, 42, 189, 286, 466, 499, 517, 577, 728
Hpy188III	TCNNGA	6 cut(s)	46, 83, 229, 362, 455, 563
Hpy8I	GTNNAC	3 cut(s)	237, 454, 544
Hpy99I	CGWCG	2 cut(s)	77, 184
HpyAV	CCTTC	2 cut(s)	291, 452
HpyCH4III	ACNGT	2 cut(s)	73, 618
HpyCH4IV	ACGT	1 cut(s)	714
HpyCH4V	TGCA	3 cut(s)	262, 292, 297
HpyF10VI	GCNNNNNNNGC	1 cut(s)	684
HpyF3I	CTNAG	4 cut(s)	363, 410, 496, 576
HpySE526I	ACGT	1 cut(s)	714
Hsp92II	CATG	3 cut(s)	262, 512, 712
Kzo9I	GATC	7 cut(s)	13, 37, 42, 85, 117, 461, 658
LmnI	GCTCC	2 cut(s)	283, 433
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	1 cut(s)	714
MaeIII	GTNAC	7 cut(s)	5, 29, 53, 253, 340, 355, 415
MalI	GATC	7 cut(s)	15, 39, 44, 87, 119, 463, 660
MboI	GATC	7 cut(s)	13, 37, 42, 85, 117, 461, 658
MboII	GAAGA	5 cut(s)	80, 121, 468, 479, 620
MflI	RGATCY	2 cut(s)	117, 461
MhlI	GDGCHC	1 cut(s)	589
MluCI	AATT	4 cut(s)	92, 104, 518, 741
MlyI	GAGTC	1 cut(s)	723
MmeI	TCCRAC	1 cut(s)	706
MnlI	CCTC	8 cut(s)	90, 225, 373, 391, 463, 571, 576, 756
MseI	TTAA	3 cut(s)	168, 174, 665
MspI	CCGG	1 cut(s)	449
MspR9I	CCNGG	2 cut(s)	336, 484
MvaI	CCWGG	2 cut(s)	336, 484
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	1 cut(s)	684
NdeII	GATC	7 cut(s)	13, 37, 42, 85, 117, 461, 658
NlaIII	CATG	3 cut(s)	262, 512, 712
NmuCI	GTSAC	2 cut(s)	253, 340
PasI	CCCWGGG	1 cut(s)	483
PceI	AGGCCT	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 185
PfeI	GAWTC	1 cut(s)	184
PinAI	ACCGGT	1 cut(s)	448
PleI	GAGTC	1 cut(s)	723
PpsI	GAGTC	1 cut(s)	723
Psp6I	CCWGG	2 cut(s)	334, 482
PspGI	CCWGG	2 cut(s)	334, 482
PsuI	RGATCY	2 cut(s)	117, 461
RsaI	GTAC	1 cut(s)	713
RsaNI	GTAC	1 cut(s)	712
SaqAI	TTAA	3 cut(s)	168, 174, 665
Sau3AI	GATC	7 cut(s)	13, 37, 42, 85, 117, 461, 658
SchI	GAGTC	1 cut(s)	723
ScrFI	CCNGG	2 cut(s)	336, 484
SduI	GDGCHC	1 cut(s)	589
SetI	ASST	9 cut(s)	66, 174, 236, 268, 280, 322, 331, 603, 717
Sse9I	AATT	4 cut(s)	92, 104, 518, 741
SseBI	AGGCCT	1 cut(s)	208
SsiI	CCGC	1 cut(s)	34
SspMI	CTAG	1 cut(s)	330
StuI	AGGCCT	1 cut(s)	208
StyD4I	CCNGG	2 cut(s)	334, 482
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	2 cut(s)	73, 618
TaiI	ACGT	1 cut(s)	717
TaqI	TCGA	4 cut(s)	12, 75, 84, 391
TaqII	GACCGA	2 cut(s)	164, 725
TasI	AATT	4 cut(s)	92, 104, 518, 741
TfiI	GAWTC	1 cut(s)	184
Tru1I	TTAA	3 cut(s)	168, 174, 665
Tru9I	TTAA	3 cut(s)	168, 174, 665
TscAI	CASTG	1 cut(s)	299
TseFI	GTSAC	2 cut(s)	253, 340
Tsp45I	GTSAC	2 cut(s)	253, 340
TspDTI	ATGAA	1 cut(s)	697
TspRI	CASTG	1 cut(s)	299
XapI	RAATTY	1 cut(s)	518
XmiI	GTMKAC	1 cut(s)	236
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.