Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0010691

Physical Location & Seq

Genomic Coordinates Reverse (-)

14987476 .. 14989774

Gene Structure 2299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g17230.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGTTAATAATAATTCCTAAAAAAAAAAATATAATAATAATTTCATTATTTTTTTATTATCTCACTGAAAAAAACAACCCAAAGACAACCCAACAGGGTCCCACGTTATTTCTTCCCATCTCTCTCTCTCGGAAACCACTCTCAAAATCATTCAAATCTCTCCCTCTCTCTCGACCACTCCCCGCCACCGGGAAACAGCTCATCTCCGCCGCAAAACCACCATCTCCTCTCTCTTCTCTGATCGCTTCCGATATGATCACCGGCGAGCTTCTCAGCATCGAACCCCAAGAACTCCAGTTCCCCTTTGAATTGAGGAAGCAGATCTCTTGCTCTCTGCAACTCTCCAACAAAACCAATGACTTTGTGGCTTTCAAGGTAAAAACAACAAATCCCAAAAAGTACTGTGTTAGACCAAACACTGGGGTTGTGTTGCCAAGGTCCACTTCTGATGTTATAGTGACAATGCAAGCGCAAAAGGAGGCACCTTCGGATATGCAATGCAAGGACAAGTTCCTTCTTCAGAGCGTCGTTGCCAGCCCCGGGACTACCACAAAGGACATCACTGCAGAGATGTTCAATAAGGAATCAGGGCATAATGTTGAAGAGTGTAAATTGAGAGTTCTCTATGTTGCTCCACCTCGGCCACCATCGCCGGTTCGCGAAGGTTCAGAGGAAGGTTCGTCACCCAGGGCTTCAGTGGACAACGGGAGTGCAGCAGCCTCTGAGTTCAAAGCTGCTTCAAGAGCTTTCTCTGAGCAACACGAGCATCAAGATAACTCGTCTGAGGCAAGGACATTAATTGCAAGGCTGACTGAGGAGAAAAATTCTGCCATTCAGCAAAATAACAGGCTTCAACAAGAACTGGTGAGGAACTTTTTGTTTCTGTCGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0005829 GO:0005886 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0031224 GO:0031984 GO:0033036 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

298

Amino Acids

32.95

Weight (kDa)

9.44

Isoelectric Point (pI)

54.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45140 AT2G45140 AT3G60600 AT3G60600
fragaria_vesca	FvH4_7g11090
malus_domestica	MD02G1210500.v1.1 MD07G1115600.v1.1
prunus_persica	Prupe.2G138100_v2.0.a1
pyrus_communis	pycom02g17230 pycom07g10890
rosa_chinensis	RchiOBHm_Chr1g0349111
rosa_laevigata	RLG00000028605
rosa_multiflora	Rmu_sc0008324.1_g000004 Rmu_sc0012100.1_g000006
rosa_roxburghii	Rroxscaffold_4G00306110
rosa_rugosa	Rorug01G0200200
rosa_samantha	Rh1AG217900 Rh1BG183500 Rh1CG202300
rosa_wichuraiana	Rw1G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	481
AccB7I	CCANNNNNTGG	1 cut(s)	419
AccII	CGCG	1 cut(s)	660
AciI	CCGC	3 cut(s)	183, 207, 210
AcoI	YGGCCR	1 cut(s)	641
AcsI	RAATTY	1 cut(s)	823
AcuI	CTGAAG	2 cut(s)	503, 678
AfaI	GTAC	1 cut(s)	401
AfiI	CCNNNNNNNGG	4 cut(s)	188, 189, 419, 540
AgsI	TTSAA	8 cut(s)	154, 308, 373, 577, 602, 730, 741, 854
AjnI	CCWGG	1 cut(s)	686
AjuI	GAANNNNNNNTTGG	2 cut(s)	427, 459
AloI	GAACNNNNNNTCC	2 cut(s)	282, 314
AluBI	AGCT	4 cut(s)	199, 268, 734, 746
AluI	AGCT	4 cut(s)	199, 268, 734, 746
AlwNI	CAGNNNCTG	1 cut(s)	722
Ama87I	CYCGRG	1 cut(s)	539
AoxI	GGCC	1 cut(s)	641
ApeKI	GCWGC	3 cut(s)	713, 716, 734
ApoI	RAATTY	1 cut(s)	823
AseI	ATTAAT	1 cut(s)	797
AspLEI	GCGC	1 cut(s)	472
AspS9I	GGNCC	2 cut(s)	98, 438
AsuC2I	CCSGG	3 cut(s)	190, 540, 541
AsuHPI	GGTGA	3 cut(s)	250, 675, 877
AvaI	CYCGRG	1 cut(s)	539
AvaII	GGWCC	2 cut(s)	98, 438
BanI	GGYRCC	1 cut(s)	481
BauI	CACGAG	1 cut(s)	761
BbvI	GCAGC	3 cut(s)	721, 725, 728
BccI	CCATC	3 cut(s)	125, 229, 655
BciT130I	CCWGG	1 cut(s)	688
BclI	TGATCA	1 cut(s)	255
BcnI	CCSGG	3 cut(s)	190, 540, 541
BfmI	CTRYAG	1 cut(s)	564
BglII	AGATCT	1 cut(s)	321
BisI	GCNGC	4 cut(s)	210, 714, 717, 735
BlsI	GCNGC	4 cut(s)	211, 715, 718, 736
BmcAI	AGTACT	1 cut(s)	401
Bme1390I	CCNGG	4 cut(s)	190, 540, 541, 688
Bme18I	GGWCC	2 cut(s)	98, 438
BmeT110I	CYCGRG	1 cut(s)	539
BmgT120I	GGNCC	2 cut(s)	98, 438
BmiI	GGNNCC	3 cut(s)	99, 100, 483
BmrFI	CCNGG	4 cut(s)	190, 540, 541, 688
BmrI	ACTGGG	1 cut(s)	429
BmsI	GCATC	2 cut(s)	285, 775
BmuI	ACTGGG	1 cut(s)	429
BpmI	CTGGAG	1 cut(s)	278
BpuMI	CCSGG	3 cut(s)	190, 540, 541
BsaJI	CCNNGG	6 cut(s)	434, 538, 539, 638, 686, 687
Bsc4I	CCNNNNNNNGG	4 cut(s)	188, 189, 419, 540
Bse118I	RCCGGY	2 cut(s)	260, 652
Bse1I	ACTGG	3 cut(s)	295, 424, 867
Bse3DI	GCAATG	1 cut(s)	503
BseBI	CCWGG	1 cut(s)	688
BseDI	CCNNGG	6 cut(s)	434, 538, 539, 638, 686, 687
BseLI	CCNNNNNNNGG	4 cut(s)	188, 189, 419, 540
BseMI	GCAATG	1 cut(s)	503
BseMII	CTCAG	5 cut(s)	286, 714, 744, 774, 804
BseNI	ACTGG	3 cut(s)	295, 424, 867
BseRI	GAGGAG	2 cut(s)	216, 830
BseXI	GCAGC	3 cut(s)	721, 725, 728
BsgI	GTGCAG	1 cut(s)	732
Bsh1236I	CGCG	1 cut(s)	660
BshFI	GGCC	1 cut(s)	643
BshNI	GGYRCC	1 cut(s)	481
BsiHKCI	CYCGRG	1 cut(s)	539
BsiSI	CCGG	4 cut(s)	189, 261, 540, 653
BslFI	GGGAC	2 cut(s)	84, 556
BslI	CCNNNNNNNGG	4 cut(s)	188, 189, 419, 540
BsmFI	GGGAC	2 cut(s)	84, 556
BsnI	GGCC	1 cut(s)	643
BsoBI	CYCGRG	1 cut(s)	539
Bsp143I	GATC	3 cut(s)	240, 255, 321
Bsp68I	TCGCGA	1 cut(s)	660
BspACI	CCGC	3 cut(s)	183, 207, 210
BspANI	GGCC	1 cut(s)	643
BspCNI	CTCAG	5 cut(s)	285, 715, 745, 775, 805
BspFNI	CGCG	1 cut(s)	660
BspLI	GGNNCC	3 cut(s)	99, 100, 483
BspMAI	CTGCAG	1 cut(s)	568
BspT107I	GGYRCC	1 cut(s)	481
BsrDI	GCAATG	1 cut(s)	503
BsrFI	RCCGGY	2 cut(s)	260, 652
BsrI	ACTGG	3 cut(s)	295, 424, 867
BssAI	RCCGGY	2 cut(s)	260, 652
BssECI	CCNNGG	6 cut(s)	434, 538, 539, 638, 686, 687
BssMI	GATC	3 cut(s)	240, 255, 321
BssSI	CACGAG	1 cut(s)	761
BssT1I	CCWWGG	1 cut(s)	434
Bst2BI	CACGAG	1 cut(s)	761
Bst2UI	CCWGG	1 cut(s)	688
Bst4CI	ACNGT	1 cut(s)	404
Bst6I	CTCTTC	2 cut(s)	238, 597
BstC8I	GCNNGC	3 cut(s)	266, 468, 535
BstDEI	CTNAG	5 cut(s)	272, 723, 753, 783, 813
BstFNI	CGCG	1 cut(s)	660
BstHHI	GCGC	1 cut(s)	472
BstKTI	GATC	3 cut(s)	243, 258, 324
BstMBI	GATC	3 cut(s)	240, 255, 321
BstMWI	GCNNNNNNNGC	3 cut(s)	649, 743, 763
BstNI	CCWGG	1 cut(s)	688
BstSCI	CCNGG	4 cut(s)	188, 538, 539, 686
BstSFI	CTRYAG	1 cut(s)	564
BstUI	CGCG	1 cut(s)	660
BstV1I	GCAGC	3 cut(s)	721, 725, 728
BstX2I	RGATCY	1 cut(s)	321
BstYI	RGATCY	1 cut(s)	321
BsuRI	GGCC	1 cut(s)	643
BtgZI	GCGATG	1 cut(s)	633
BtsI	GCAGTG	1 cut(s)	561
BtsIMutI	CAGTG	4 cut(s)	63, 417, 561, 702
BtuMI	TCGCGA	1 cut(s)	660
Cac8I	GCNNGC	3 cut(s)	266, 468, 535
CaiI	CAGNNNCTG	1 cut(s)	722
CfoI	GCGC	1 cut(s)	472
Cfr10I	RCCGGY	2 cut(s)	260, 652
Cfr13I	GGNCC	2 cut(s)	98, 438
Cfr9I	CCCGGG	1 cut(s)	539
CseI	GACGC	1 cut(s)	514
Csp6I	GTAC	1 cut(s)	400
CviQI	GTAC	1 cut(s)	400
DdeI	CTNAG	5 cut(s)	272, 723, 753, 783, 813
DpnI	GATC	3 cut(s)	242, 257, 323
DpnII	GATC	3 cut(s)	240, 255, 321
EaeI	YGGCCR	1 cut(s)	641
Eam1104I	CTCTTC	2 cut(s)	238, 597
EarI	CTCTTC	2 cut(s)	238, 597
EciI	GGCGGA	1 cut(s)	196
Eco130I	CCWWGG	1 cut(s)	434
Eco47I	GGWCC	2 cut(s)	98, 438
Eco57I	CTGAAG	2 cut(s)	503, 678
Eco88I	CYCGRG	1 cut(s)	539
EcoO109I	RGGNCCY	1 cut(s)	98
EcoRII	CCWGG	1 cut(s)	686
EcoT14I	CCWWGG	1 cut(s)	434
ErhI	CCWWGG	1 cut(s)	434
FaiI	YATR	6 cut(s)	32, 254, 455, 494, 594, 627
FalI	AAGNNNNNCTT	2 cut(s)	427, 459
FaqI	GGGAC	2 cut(s)	84, 556
FauI	CCCGC	1 cut(s)	190
FbaI	TGATCA	1 cut(s)	255
Fnu4HI	GCNGC	4 cut(s)	210, 714, 717, 735
Fsp4HI	GCNGC	4 cut(s)	210, 714, 717, 735
GlaI	GCGC	1 cut(s)	471
GluI	GCNGC	4 cut(s)	210, 714, 717, 735
GsuI	CTGGAG	1 cut(s)	278
HaeIII	GGCC	1 cut(s)	643
HapII	CCGG	4 cut(s)	189, 261, 540, 653
HgaI	GACGC	1 cut(s)	514
HhaI	GCGC	1 cut(s)	472
Hin6I	GCGC	1 cut(s)	470
HinP1I	GCGC	1 cut(s)	470
HinfI	GANTC	1 cut(s)	584
HpaII	CCGG	4 cut(s)	189, 261, 540, 653
HphI	GGTGA	3 cut(s)	250, 675, 877
Hpy166II	GTNNAC	2 cut(s)	441, 700
Hpy188III	TCNNGA	4 cut(s)	171, 659, 741, 770
Hpy8I	GTNNAC	2 cut(s)	441, 700
Hpy99I	CGWCG	1 cut(s)	530
HpyAV	CCTTC	4 cut(s)	495, 524, 656, 668
HpyCH4III	ACNGT	1 cut(s)	404
HpyCH4IV	ACGT	1 cut(s)	104
HpyCH4V	TGCA	7 cut(s)	337, 466, 496, 501, 566, 713, 803
HpyF10VI	GCNNNNNNNGC	3 cut(s)	649, 743, 763
HpyF3I	CTNAG	5 cut(s)	272, 723, 753, 783, 813
HpySE526I	ACGT	1 cut(s)	104
HspAI	GCGC	1 cut(s)	470
KflI	GGGWCCC	1 cut(s)	98
Ksp22I	TGATCA	1 cut(s)	255
Kzo9I	GATC	3 cut(s)	240, 255, 321
LmnI	GCTCC	1 cut(s)	637
Lsp1109I	GCAGC	3 cut(s)	721, 725, 728
LweI	GCATC	2 cut(s)	285, 775
MaeII	ACGT	1 cut(s)	104
MaeIII	GTNAC	2 cut(s)	457, 681
MalI	GATC	3 cut(s)	242, 257, 323
MboI	GATC	3 cut(s)	240, 255, 321
MboII	GAAGA	4 cut(s)	104, 225, 509, 614
MflI	RGATCY	1 cut(s)	321
MluCI	AATT	6 cut(s)	12, 39, 308, 611, 798, 823
MmeI	TCCRAC	1 cut(s)	369
MseI	TTAA	3 cut(s)	5, 797, 892
MspI	CCGG	4 cut(s)	189, 261, 540, 653
MspR9I	CCNGG	4 cut(s)	190, 540, 541, 688
MvaI	CCWGG	1 cut(s)	688
MvnI	CGCG	1 cut(s)	660
MwoI	GCNNNNNNNGC	3 cut(s)	649, 743, 763
NciI	CCSGG	3 cut(s)	190, 540, 541
NdeII	GATC	3 cut(s)	240, 255, 321
NlaIV	GGNNCC	3 cut(s)	99, 100, 483
NmeAIII	GCCGAG	1 cut(s)	619
NmuCI	GTSAC	2 cut(s)	457, 681
NruI	TCGCGA	1 cut(s)	660
PasI	CCCWGGG	1 cut(s)	687
PfeI	GAWTC	1 cut(s)	584
PflMI	CCANNNNNTGG	1 cut(s)	419
PkrI	GCNGC	4 cut(s)	211, 715, 718, 736
PpuMI	RGGWCCY	1 cut(s)	98
PshBI	ATTAAT	1 cut(s)	797
Psp5II	RGGWCCY	1 cut(s)	98
Psp6I	CCWGG	1 cut(s)	686
PspGI	CCWGG	1 cut(s)	686
PspN4I	GGNNCC	3 cut(s)	99, 100, 483
PspPI	GGNCC	2 cut(s)	98, 438
PspPPI	RGGWCCY	1 cut(s)	98
PstI	CTGCAG	1 cut(s)	568
PstNI	CAGNNNCTG	1 cut(s)	722
PsuI	RGATCY	1 cut(s)	321
RruI	TCGCGA	1 cut(s)	660
RsaI	GTAC	1 cut(s)	401
RsaNI	GTAC	1 cut(s)	400
SaqAI	TTAA	3 cut(s)	5, 797, 892
SatI	GCNGC	4 cut(s)	210, 714, 717, 735
Sau3AI	GATC	3 cut(s)	240, 255, 321
Sau96I	GGNCC	2 cut(s)	98, 438
ScaI	AGTACT	1 cut(s)	401
ScrFI	CCNGG	4 cut(s)	190, 540, 541, 688
SfaNI	GCATC	2 cut(s)	285, 775
SfcI	CTRYAG	1 cut(s)	564
SgrAI	CRCCGGYG	1 cut(s)	260
SinI	GGWCC	2 cut(s)	98, 438
SmaI	CCCGGG	1 cut(s)	541
Sse9I	AATT	6 cut(s)	12, 39, 308, 611, 798, 823
SsiI	CCGC	3 cut(s)	183, 207, 210
StyD4I	CCNGG	4 cut(s)	188, 538, 539, 686
StyI	CCWWGG	1 cut(s)	434
TaaI	ACNGT	1 cut(s)	404
TaiI	ACGT	1 cut(s)	107
TaqI	TCGA	2 cut(s)	172, 279
TasI	AATT	6 cut(s)	12, 39, 308, 611, 798, 823
TatI	WGTACW	1 cut(s)	399
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	1 cut(s)	584
Tru1I	TTAA	3 cut(s)	5, 797, 892
Tru9I	TTAA	3 cut(s)	5, 797, 892
TscAI	CASTG	4 cut(s)	70, 424, 568, 702
TseFI	GTSAC	2 cut(s)	457, 681
TseI	GCWGC	3 cut(s)	713, 716, 734
Tsp45I	GTSAC	2 cut(s)	457, 681
TspDTI	ATGAA	1 cut(s)	33
TspMI	CCCGGG	1 cut(s)	539
TspRI	CASTG	4 cut(s)	70, 424, 568, 702
Van91I	CCANNNNNTGG	1 cut(s)	419
VpaK11BI	GGWCC	2 cut(s)	98, 438
VspI	ATTAAT	1 cut(s)	797
XapI	RAATTY	1 cut(s)	823
XcmI	CCANNNNNNNNNTGG	2 cut(s)	361, 694
XmaI	CCCGGG	1 cut(s)	539
ZrmI	AGTACT	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.