Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010691

Physical Location & Seq

Genomic Coordinates Forward (+)

27957533 .. 27958304

Gene Structure 772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0200200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGATGGGTATGTGAAGCAGGGGAAGCTGGTTGAGGCTATTAAGGTCATGGATGAGATGGAGGTTACTTATGGGGTTATGATTGAAGCTTATTGTACGGAGAAGAAGTCGGGTGAAGCGGTTAATTTGCTTGATGATATGGTGCAGAAGAAGTATATACCGAGCTCGGCGCTCTGTTGTAAGGTGATTGATGTGTTGTGTTGCGAAGGGAAGGTGGAGGATGCTTGTGTACTGTGGAAGAGGCTTTTGAAGAAGAATTGCACACCGGATAATGCAGTATTGGGGACACTCATATATTGGCTTTGTAAGAAGGGAGAAGTATGGGAAGCCAGGAAATTGTTTGATCAGTTTGAGACGAGTGAGCCTCCGGATGTCATGACTTACAACGTGCTTATTTCTGGAATGTGTGAAGTGGGGGAGTTGTGTGAGATTGGAAAAGCGAAGGAGGGAATTAGGATTTTGGACGAGATGTTCGAAAAAGGCTATTTGCCAAACAAGTCTACTTATGCTATGTTGATTGAGGGGCTCTGTGACTCGGGAGAGGATGCTGAAATGGCTAGAGTAATATCTATGTCAATATCAAGTGGAGACATTAACAGTGATTCCTGGGAGCTTTTCCTTACTAAAGTTGTTGGTGATTTGGATTCTGGGGAAAGTGTTCTAAACAGAATACTACTGGAGAATGCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000322 GO:0000325 GO:0000326 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005783 GO:0005789 GO:0005829 GO:0005886 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0031224 GO:0031984 GO:0033036 GO:0034613 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Motile_Sperm

Protein Analysis

230

Amino Acids

25.64

Weight (kDa)

4.51

Isoelectric Point (pI)

30.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	22 - 56	3.3e-06	PPR repeat family
PPR_1	PF12854	85 - 116	3e-06	PPR repeat
PPR_2	PF13041	96 - 136	8.1e-08	PPR repeat family
PPR_2	PF13041	141 - 178	1.2e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010691)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45140 AT2G45140 AT3G60600 AT3G60600
fragaria_vesca	FvH4_7g11090
malus_domestica	MD02G1210500.v1.1 MD07G1115600.v1.1
prunus_persica	Prupe.2G138100_v2.0.a1
pyrus_communis	pycom02g17230 pycom07g10890
rosa_chinensis	RchiOBHm_Chr1g0349111
rosa_laevigata	RLG00000028605
rosa_multiflora	Rmu_sc0008324.1_g000004 Rmu_sc0012100.1_g000006
rosa_roxburghii	Rroxscaffold_4G00306110
rosa_rugosa	Rorug01G0200200
rosa_samantha	Rh1AG217900 Rh1BG183500 Rh1CG202300
rosa_wichuraiana	Rw1G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	500
AccIII	TCCGGA	1 cut(s)	367
AciI	CCGC	1 cut(s)	119
AfaI	GTAC	2 cut(s)	97, 231
AgsI	TTSAA	2 cut(s)	86, 250
AjnI	CCWGG	2 cut(s)	329, 605
AloI	GAACNNNNNNTCC	2 cut(s)	455, 487
AluBI	AGCT	4 cut(s)	28, 89, 165, 613
AluI	AGCT	4 cut(s)	28, 89, 165, 613
Alw21I	GWGCWC	1 cut(s)	167
Alw26I	GTCTC	2 cut(s)	347, 582
Ama87I	CYCGRG	1 cut(s)	535
Aor13HI	TCCGGA	1 cut(s)	367
ArsI	GACNNNNNNTTYG	2 cut(s)	455, 487
Asp700I	GAANNNNTTC	1 cut(s)	657
AspLEI	GCGC	1 cut(s)	172
AsuHPI	GGTGA	3 cut(s)	125, 196, 647
AsuII	TTCGAA	1 cut(s)	474
AvaI	CYCGRG	1 cut(s)	535
BanII	GRGCYC	2 cut(s)	167, 528
Bbv12I	GWGCWC	1 cut(s)	167
BccI	CCATC	1 cut(s)	52
BciT130I	CCWGG	2 cut(s)	331, 607
BclI	TGATCA	1 cut(s)	343
BcoDI	GTCTC	2 cut(s)	347, 582
BfaI	CTAG	1 cut(s)	558
BfoI	RGCGCY	1 cut(s)	173
Bme1390I	CCNGG	2 cut(s)	331, 607
BmeT110I	CYCGRG	1 cut(s)	535
BmrFI	CCNGG	2 cut(s)	331, 607
BmsI	GCATC	2 cut(s)	211, 535
BplI	GAGNNNNNCTC	2 cut(s)	349, 381
Bpu14I	TTCGAA	1 cut(s)	474
BsaJI	CCNNGG	1 cut(s)	606
BsaWI	WCCGGW	2 cut(s)	265, 367
BsaXI	ACNNNNNCTCC	2 cut(s)	92, 122
Bse1I	ACTGG	1 cut(s)	681
BseAI	TCCGGA	1 cut(s)	367
BseBI	CCWGG	2 cut(s)	331, 607
BseDI	CCNNGG	1 cut(s)	606
BseGI	GGATG	5 cut(s)	10, 58, 226, 376, 550
BseNI	ACTGG	1 cut(s)	681
BsgI	GTGCAG	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	167
BsiHKCI	CYCGRG	1 cut(s)	535
BsiSI	CCGG	2 cut(s)	266, 368
BslFI	GGGAC	1 cut(s)	298
BsmAI	GTCTC	2 cut(s)	347, 582
BsmBI	CGTCTC	1 cut(s)	347
BsmFI	GGGAC	1 cut(s)	298
BsmI	GAATGC	1 cut(s)	688
BsoBI	CYCGRG	1 cut(s)	535
Bsp119I	TTCGAA	1 cut(s)	474
Bsp1286I	GDGCHC	2 cut(s)	167, 528
Bsp13I	TCCGGA	1 cut(s)	367
Bsp143I	GATC	1 cut(s)	343
BspACI	CCGC	1 cut(s)	119
BspEI	TCCGGA	1 cut(s)	367
BspHI	TCATGA	1 cut(s)	375
BspT104I	TTCGAA	1 cut(s)	474
BsrI	ACTGG	1 cut(s)	681
BssECI	CCNNGG	1 cut(s)	606
BssMI	GATC	1 cut(s)	343
Bst2UI	CCWGG	2 cut(s)	331, 607
Bst4CI	ACNGT	2 cut(s)	234, 599
Bst6I	CTCTTC	1 cut(s)	233
BstBI	TTCGAA	1 cut(s)	474
BstF5I	GGATG	5 cut(s)	10, 58, 226, 376, 550
BstH2I	RGCGCY	1 cut(s)	173
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	1 cut(s)	346
BstMAI	GTCTC	2 cut(s)	347, 582
BstMBI	GATC	1 cut(s)	343
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 554
BstNI	CCWGG	2 cut(s)	331, 607
BstSCI	CCNGG	2 cut(s)	329, 605
BtsCI	GGATG	5 cut(s)	10, 58, 226, 376, 550
BtsIMutI	CAGTG	1 cut(s)	604
CciI	TCATGA	1 cut(s)	375
CfoI	GCGC	1 cut(s)	172
Csp6I	GTAC	2 cut(s)	96, 230
CviAII	CATG	2 cut(s)	49, 376
CviQI	GTAC	2 cut(s)	96, 230
DpnI	GATC	1 cut(s)	345
DpnII	GATC	1 cut(s)	343
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
Ecl136II	GAGCTC	1 cut(s)	165
Eco24I	GRGCYC	2 cut(s)	167, 528
Eco53kI	GAGCTC	1 cut(s)	165
Eco88I	CYCGRG	1 cut(s)	535
EcoICRI	GAGCTC	1 cut(s)	165
EcoRII	CCWGG	2 cut(s)	329, 605
EcoT38I	GRGCYC	2 cut(s)	167, 528
Esp3I	CGTCTC	1 cut(s)	347
FaeI	CATG	2 cut(s)	52, 379
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	2 cut(s)	48, 375
FbaI	TGATCA	1 cut(s)	343
FblI	GTMKAC	1 cut(s)	500
FokI	GGATG	5 cut(s)	17, 65, 233, 383, 557
FriOI	GRGCYC	2 cut(s)	167, 528
FspBI	CTAG	1 cut(s)	558
GlaI	GCGC	1 cut(s)	171
HaeII	RGCGCY	1 cut(s)	173
HapII	CCGG	2 cut(s)	266, 368
HhaI	GCGC	1 cut(s)	172
Hin1II	CATG	2 cut(s)	52, 379
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HindIII	AAGCTT	1 cut(s)	87
HinfI	GANTC	3 cut(s)	533, 602, 644
HpaII	CCGG	2 cut(s)	266, 368
HphI	GGTGA	3 cut(s)	125, 196, 647
Hpy166II	GTNNAC	2 cut(s)	230, 501
Hpy188III	TCNNGA	4 cut(s)	368, 376, 399, 537
Hpy8I	GTNNAC	2 cut(s)	230, 501
HpyAV	CCTTC	4 cut(s)	200, 205, 304, 436
HpyCH4III	ACNGT	2 cut(s)	234, 599
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	3 cut(s)	145, 261, 275
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 554
HpySE526I	ACGT	1 cut(s)	387
Hsp92II	CATG	2 cut(s)	52, 379
HspAI	GCGC	1 cut(s)	170
Kpn2I	TCCGGA	1 cut(s)	367
Ksp22I	TGATCA	1 cut(s)	343
Kzo9I	GATC	1 cut(s)	343
LmnI	GCTCC	1 cut(s)	610
LweI	GCATC	2 cut(s)	211, 535
MaeI	CTAG	1 cut(s)	558
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	2 cut(s)	64, 530
MalI	GATC	1 cut(s)	345
MboI	GATC	1 cut(s)	343
MboII	GAAGA	5 cut(s)	115, 160, 250, 262, 265
MhlI	GDGCHC	2 cut(s)	167, 528
MluCI	AATT	4 cut(s)	124, 256, 335, 450
MlyI	GAGTC	1 cut(s)	527
MnlI	CCTC	8 cut(s)	28, 55, 211, 234, 375, 439, 514, 535
MroI	TCCGGA	1 cut(s)	367
MroXI	GAANNNNTTC	1 cut(s)	657
MseI	TTAA	3 cut(s)	42, 123, 594
MspI	CCGG	2 cut(s)	266, 368
MspR9I	CCNGG	2 cut(s)	331, 607
Mva1269I	GAATGC	1 cut(s)	688
MvaI	CCWGG	2 cut(s)	331, 607
MwoI	GCNNNNNNNGC	2 cut(s)	25, 554
NdeII	GATC	1 cut(s)	343
NlaIII	CATG	2 cut(s)	52, 379
NmeAIII	GCCGAG	1 cut(s)	146
NmuCI	GTSAC	1 cut(s)	530
NspV	TTCGAA	1 cut(s)	474
PagI	TCATGA	1 cut(s)	375
PcsI	WCGNNNNNNNCGW	1 cut(s)	471
PctI	GAATGC	1 cut(s)	688
PdmI	GAANNNNTTC	1 cut(s)	657
PfeI	GAWTC	2 cut(s)	602, 644
PleI	GAGTC	1 cut(s)	527
PpsI	GAGTC	1 cut(s)	527
Psp124BI	GAGCTC	1 cut(s)	167
Psp6I	CCWGG	2 cut(s)	329, 605
PspGI	CCWGG	2 cut(s)	329, 605
RsaI	GTAC	2 cut(s)	97, 231
RsaNI	GTAC	2 cut(s)	96, 230
SacI	GAGCTC	1 cut(s)	167
SaqAI	TTAA	3 cut(s)	42, 123, 594
Sau3AI	GATC	1 cut(s)	343
SchI	GAGTC	1 cut(s)	527
ScrFI	CCNGG	2 cut(s)	331, 607
SduI	GDGCHC	2 cut(s)	167, 528
SetI	ASST	9 cut(s)	30, 48, 66, 91, 167, 186, 216, 390, 615
SfaNI	GCATC	2 cut(s)	211, 535
SfuI	TTCGAA	1 cut(s)	474
Sse9I	AATT	4 cut(s)	124, 256, 335, 450
SsiI	CCGC	1 cut(s)	119
SspMI	CTAG	1 cut(s)	558
SstI	GAGCTC	1 cut(s)	167
StyD4I	CCNGG	2 cut(s)	329, 605
TaaI	ACNGT	2 cut(s)	234, 599
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	1 cut(s)	474
TasI	AATT	4 cut(s)	124, 256, 335, 450
TatI	WGTACW	1 cut(s)	229
TfiI	GAWTC	2 cut(s)	602, 644
Tru1I	TTAA	3 cut(s)	42, 123, 594
Tru9I	TTAA	3 cut(s)	42, 123, 594
TscAI	CASTG	1 cut(s)	604
TseFI	GTSAC	1 cut(s)	530
Tsp45I	GTSAC	1 cut(s)	530
TspGWI	ACGGA	1 cut(s)	113
TspRI	CASTG	1 cut(s)	604
XmiI	GTMKAC	1 cut(s)	500
XmnI	GAANNNNTTC	1 cut(s)	657
XspI	CTAG	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.