Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007759

Physical Location & Seq

Genomic Coordinates Reverse (-)

18664390 .. 18666475

Gene Structure 2086 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G45260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1278 bp

ATGCTACCAAGTGGGTTGAAAGAAACCCAACTCCGTGAGAGCAACAACAACCAAAAAGTCCATCCTCAACCAATGGAAGAGTCTATCAATCAGAATCCTGAAGCTATGGAAGCACTTATCTCCAATCTCTTCGGAAACATCTCGTCTTTGAAATCTGCTTATATCGAGCTTCAAAGTGCTCATACTCCTTACGATCCCGAGAAGATTCAGGCAGCGGACAAAGTTGTCATTTCTGAACTCAAGAATCTTTCCGAAATGAAGCATTTTTACAGAGAGAATAACCCCAAACCTGTATGTGTCTCTCCACAAGACTCTCGTTTAGCTGCAGAGATCCAAGAGCAGCAGAGTTTGTTGAAGACTTATGAGGTTATGGTGAAGAAGTTTCAGTCTGAGATTCAGAACAAGGATTCTGAGATCACGCAGATGCTACAGAAGATTGAGGAAGCAAACCAGAAACGGCTTAAGCTTGAGAAGAATCTTAAGTTAAGAGGAATGTCTACAAACGAAGGTTCTAATGGAGATGGAAATATGCAGTTTCCTGACTTAACTACTGAACTCTATGTATCTACTTACGAAGCTGCTGCTAAAGCCGTGCACGATTTCTCCAAGCCGCTAATCAACATGATGAAAGCAGCAGGATGGGATCTTGATTCTGCAGCCAATTCTATTGAGCCTGATGTTGTTTACGCCAAGAGGCCTCACAAGAAATATGCATTTGAATCATACATATGCCAAAGGATGTTCAGTGGGTTTCAGCAGAAGAACTTCTCAGTAAACTCAGAGAGTGCTGCGGTTATGGCCAATGATGACACAGACACCTTTTTCCGCCAGTTTCTTGCTCTCAAGGACATGGATCCACTAGATGCTCTAGGTACAAACCCTGATTCCAACTTTGGTATATTCTGCAGGAGCAAGTATCTCCTCTTGGTCCACCCAAAGATGGAAGCTTCTTTCTTTGGAAATCTAGATCAGCGTGACTACGTGACAGGAGGTGGGCACCCGAGGACTGCGTTTTACCAGGCCTTCTTAAAACTTGCAAAGTCGATATGGATCTTGCACAGGCTTGCTTACTCTTTTGATCCAGCTGCAAAGATCTTCCAAGTGAAAAAGGGTAGTGAGTTCTCTGATTCATACATGGAAAGTGTTGTGAAGAACATAGTTGTGGATGAAAAAGAAGAGAACCCAAGAGTTGGTCTTATGGTTATGCCTGGGTTTTGGATTGGTGGCAGTGTCATTCAAAGCCGAGTTTATGTTTCTGGTGTGAAGGTCCTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF641

Protein Analysis

425

Amino Acids

48.09

Weight (kDa)

6.0

Isoelectric Point (pI)

41.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF641	PF04859	32 - 158	1.8e-46	Plant protein of unknown function (DUF641)
GIL1_IRKI_C	PF24994	365 - 417	3.7e-18	GIL1/IRKI C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45260 AT4G33320 AT4G34080 AT4G36100
fragaria_vesca	FvH4_7g11400
malus_domestica	MD02G1206300.v1.1 MD07G1118700.v1.1
prunus_persica	Prupe.2G141900_v2.0.a1 Prupe.2G141900_v2.0.a1 Prupe.2G141900_v2.0.a1 Prupe.2G141900_v2.0.a1 Prupe.2G141900_v2.0.a1
pyrus_communis	pycom02g16930 pycom07g10600
rosa_chinensis	RchiOBHm_Chr1g0349691
rosa_laevigata	RLG00000028535
rosa_roxburghii	Rroxscaffold_4G00305380
rosa_rugosa	Rorug01G0205000 Rorug01G0205100
rosa_samantha	Rh1AG222600 Rh1BG188700 Rh1CG207300 Rh1DG217800
rosa_wichuraiana	Rw1G018980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	224
AccB1I	GGYRCC	1 cut(s)	996
AccB7I	CCANNNNNTGG	1 cut(s)	1190
AccI	GTMKAC	1 cut(s)	497
AciI	CCGC	4 cut(s)	215, 611, 791, 826
AclWI	GGATC	7 cut(s)	188, 325, 651, 848, 861, 1058, 1073
AcoI	YGGCCR	1 cut(s)	798
AcuI	CTGAAG	1 cut(s)	120
AfaI	GTAC	1 cut(s)	874
AfiI	CCNNNNNNNGG	2 cut(s)	940, 1190
AflII	CTTAAG	2 cut(s)	461, 479
AgsI	TTSAA	6 cut(s)	19, 151, 173, 355, 719, 1238
AjnI	CCWGG	2 cut(s)	1017, 1207
AluBI	AGCT	7 cut(s)	104, 169, 323, 466, 578, 947, 1085
AluI	AGCT	7 cut(s)	104, 169, 323, 466, 578, 947, 1085
Alw21I	GWGCWC	2 cut(s)	181, 597
Alw26I	GTCTC	1 cut(s)	304
Alw44I	GTGCAC	1 cut(s)	593
AlwI	GGATC	7 cut(s)	188, 325, 651, 848, 861, 1058, 1073
Ama87I	CYCGRG	2 cut(s)	197, 1000
AoxI	GGCC	3 cut(s)	695, 798, 1020
ApaLI	GTGCAC	1 cut(s)	593
ApeKI	GCWGC	9 cut(s)	212, 323, 340, 578, 581, 632, 656, 788, 1085
Asp700I	GAANNNNTTC	1 cut(s)	764
AspS9I	GGNCC	2 cut(s)	928, 1267
AsuHPI	GGTGA	1 cut(s)	385
AvaI	CYCGRG	2 cut(s)	197, 1000
AvaII	GGWCC	2 cut(s)	928, 1267
BaeGI	GKGCMC	2 cut(s)	597, 999
BalI	TGGCCA	1 cut(s)	800
BamHI	GGATCC	1 cut(s)	853
BanI	GGYRCC	1 cut(s)	996
BarI	GAAGNNNNNNTAC	2 cut(s)	251, 283
BbsI	GAAGAC	1 cut(s)	362
Bbv12I	GWGCWC	2 cut(s)	181, 597
BbvI	GCAGC	9 cut(s)	224, 310, 352, 565, 568, 644, 668, 775, 1072
BccI	CCATC	4 cut(s)	69, 515, 633, 934
BceAI	ACGGC	2 cut(s)	473, 575
BcgI	CGANNNNNNTGC	2 cut(s)	563, 597
BciT130I	CCWGG	2 cut(s)	1019, 1209
BcoDI	GTCTC	1 cut(s)	304
BfaI	CTAG	3 cut(s)	860, 869, 965
BfmI	CTRYAG	4 cut(s)	324, 428, 654, 904
BfrI	CTTAAG	2 cut(s)	461, 479
BglII	AGATCT	1 cut(s)	1092
Bme1390I	CCNGG	2 cut(s)	1019, 1209
Bme18I	GGWCC	2 cut(s)	928, 1267
BmeT110I	CYCGRG	2 cut(s)	197, 1000
BmgT120I	GGNCC	2 cut(s)	928, 1267
BmiI	GGNNCC	2 cut(s)	855, 998
BmrFI	CCNGG	2 cut(s)	1019, 1209
BmsI	GCATC	2 cut(s)	414, 853
BpiI	GAAGAC	1 cut(s)	362
BpuEI	CTTGAG	3 cut(s)	224, 488, 827
BsaAI	YACGTR	1 cut(s)	982
BsaBI	GATNNNNATC	1 cut(s)	1049
BsaJI	CCNNGG	2 cut(s)	1001, 1208
BsaXI	ACNNNNNCTCC	2 cut(s)	587, 617
Bsc4I	CCNNNNNNNGG	2 cut(s)	940, 1190
Bse1I	ACTGG	1 cut(s)	829
Bse8I	GATNNNNATC	1 cut(s)	1049
BseBI	CCWGG	2 cut(s)	1019, 1209
BseDI	CCNNGG	2 cut(s)	1001, 1208
BseGI	GGATG	4 cut(s)	61, 644, 744, 1171
BseJI	GATNNNNATC	1 cut(s)	1049
BseLI	CCNNNNNNNGG	2 cut(s)	940, 1190
BseMII	CTCAG	4 cut(s)	381, 402, 783, 792
BseNI	ACTGG	1 cut(s)	829
BseRI	GAGGAG	1 cut(s)	911
BseSI	GKGCMC	2 cut(s)	597, 999
BseXI	GCAGC	9 cut(s)	224, 310, 352, 565, 568, 644, 668, 775, 1072
BshFI	GGCC	3 cut(s)	697, 800, 1022
BshNI	GGYRCC	1 cut(s)	996
BsiHKAI	GWGCWC	2 cut(s)	181, 597
BsiHKCI	CYCGRG	2 cut(s)	197, 1000
BslI	CCNNNNNNNGG	2 cut(s)	940, 1190
BsmAI	GTCTC	1 cut(s)	304
BsnI	GGCC	3 cut(s)	697, 800, 1022
BsoBI	CYCGRG	2 cut(s)	197, 1000
Bsp1286I	GDGCHC	3 cut(s)	181, 597, 999
Bsp143I	GATC	9 cut(s)	193, 330, 414, 643, 853, 967, 1050, 1078, 1092
BspACI	CCGC	4 cut(s)	215, 611, 791, 826
BspANI	GGCC	3 cut(s)	697, 800, 1022
BspCNI	CTCAG	4 cut(s)	382, 403, 782, 791
BspLI	GGNNCC	2 cut(s)	855, 998
BspMAI	CTGCAG	3 cut(s)	328, 658, 908
BspPI	GGATC	7 cut(s)	188, 325, 651, 848, 861, 1058, 1073
BspT107I	GGYRCC	1 cut(s)	996
BspTI	CTTAAG	2 cut(s)	461, 479
BsrI	ACTGG	1 cut(s)	829
BssECI	CCNNGG	2 cut(s)	1001, 1208
BssMI	GATC	9 cut(s)	193, 330, 414, 643, 853, 967, 1050, 1078, 1092
Bst2UI	CCWGG	2 cut(s)	1019, 1209
Bst6I	CTCTTC	3 cut(s)	72, 134, 1170
BstAFI	CTTAAG	2 cut(s)	461, 479
BstBAI	YACGTR	1 cut(s)	982
BstC8I	GCNNGC	1 cut(s)	1065
BstDEI	CTNAG	4 cut(s)	390, 411, 769, 778
BstF5I	GGATG	4 cut(s)	61, 644, 744, 1171
BstKTI	GATC	9 cut(s)	196, 333, 417, 646, 856, 970, 1053, 1081, 1095
BstMAI	GTCTC	1 cut(s)	304
BstMBI	GATC	9 cut(s)	193, 330, 414, 643, 853, 967, 1050, 1078, 1092
BstMWI	GCNNNNNNNGC	3 cut(s)	110, 587, 797
BstNI	CCWGG	2 cut(s)	1019, 1209
BstSCI	CCNGG	2 cut(s)	1017, 1207
BstSFI	CTRYAG	4 cut(s)	324, 428, 654, 904
BstSLI	GKGCMC	2 cut(s)	597, 999
BstV1I	GCAGC	9 cut(s)	224, 310, 352, 565, 568, 644, 668, 775, 1072
BstV2I	GAAGAC	1 cut(s)	362
BstX2I	RGATCY	5 cut(s)	330, 643, 853, 1050, 1092
BstYI	RGATCY	5 cut(s)	330, 643, 853, 1050, 1092
BsuRI	GGCC	3 cut(s)	697, 800, 1022
BtsCI	GGATG	4 cut(s)	61, 644, 744, 1171
BtsI	GCAGTG	1 cut(s)	1234
BtsIMutI	CAGTG	2 cut(s)	751, 1234
Cac8I	GCNNGC	1 cut(s)	1065
Cfr13I	GGNCC	2 cut(s)	928, 1267
Csp6I	GTAC	1 cut(s)	873
CviAII	CATG	3 cut(s)	622, 850, 1135
CviQI	GTAC	1 cut(s)	873
DdeI	CTNAG	4 cut(s)	390, 411, 769, 778
DpnI	GATC	9 cut(s)	195, 332, 416, 645, 855, 969, 1052, 1080, 1094
DpnII	GATC	9 cut(s)	193, 330, 414, 643, 853, 967, 1050, 1078, 1092
DrdI	GACNNNNNNGTC	1 cut(s)	224
DseDI	GACNNNNNNGTC	1 cut(s)	224
EaeI	YGGCCR	1 cut(s)	798
Eam1104I	CTCTTC	3 cut(s)	72, 134, 1170
EarI	CTCTTC	3 cut(s)	72, 134, 1170
EciI	GGCGGA	1 cut(s)	815
Eco147I	AGGCCT	2 cut(s)	697, 1022
Eco47I	GGWCC	2 cut(s)	928, 1267
Eco57I	CTGAAG	1 cut(s)	120
Eco88I	CYCGRG	2 cut(s)	197, 1000
EcoO109I	RGGNCCY	1 cut(s)	1267
EcoRII	CCWGG	2 cut(s)	1017, 1207
EcoT22I	ATGCAT	1 cut(s)	715
FaeI	CATG	3 cut(s)	625, 853, 1138
FatI	CATG	3 cut(s)	621, 849, 1134
FauNDI	CATATG	1 cut(s)	728
FblI	GTMKAC	1 cut(s)	497
FokI	GGATG	4 cut(s)	48, 651, 751, 1178
FspBI	CTAG	3 cut(s)	860, 869, 965
HaeIII	GGCC	3 cut(s)	697, 800, 1022
Hin1II	CATG	3 cut(s)	625, 853, 1138
HindIII	AAGCTT	2 cut(s)	464, 945
HphI	GGTGA	1 cut(s)	385
Hpy166II	GTNNAC	5 cut(s)	498, 595, 685, 775, 931
Hpy188I	TCNGA	9 cut(s)	93, 134, 235, 253, 391, 399, 412, 781, 1126
Hpy188III	TCNNGA	6 cut(s)	98, 197, 241, 539, 647, 965
Hpy8I	GTNNAC	5 cut(s)	498, 595, 685, 775, 931
HpyAV	CCTTC	3 cut(s)	500, 1033, 1258
HpyCH4IV	ACGT	1 cut(s)	981
HpyCH4V	TGCA	9 cut(s)	326, 532, 595, 656, 713, 906, 1037, 1057, 1088
HpyF10VI	GCNNNNNNNGC	3 cut(s)	110, 587, 797
HpyF3I	CTNAG	4 cut(s)	390, 411, 769, 778
HpySE526I	ACGT	1 cut(s)	981
Hsp92II	CATG	3 cut(s)	625, 853, 1138
Kzo9I	GATC	9 cut(s)	193, 330, 414, 643, 853, 967, 1050, 1078, 1092
LmnI	GCTCC	1 cut(s)	909
Lsp1109I	GCAGC	9 cut(s)	224, 310, 352, 565, 568, 644, 668, 775, 1072
LweI	GCATC	2 cut(s)	414, 853
MaeI	CTAG	3 cut(s)	860, 869, 965
MaeII	ACGT	1 cut(s)	981
MaeIII	GTNAC	2 cut(s)	974, 982
MalI	GATC	9 cut(s)	195, 332, 416, 645, 855, 969, 1052, 1080, 1094
MboI	GATC	9 cut(s)	193, 330, 414, 643, 853, 967, 1050, 1078, 1092
MflI	RGATCY	5 cut(s)	330, 643, 853, 1050, 1092
MhlI	GDGCHC	3 cut(s)	181, 597, 999
MlsI	TGGCCA	1 cut(s)	800
MluCI	AATT	1 cut(s)	661
MluNI	TGGCCA	1 cut(s)	800
MlyI	GAGTC	2 cut(s)	89, 305
MmeI	TCCRAC	1 cut(s)	912
MnlI	CCTC	9 cut(s)	75, 358, 433, 482, 687, 708, 932, 983, 996
Mox20I	TGGCCA	1 cut(s)	800
Mph1103I	ATGCAT	1 cut(s)	715
MroXI	GAANNNNTTC	1 cut(s)	764
MscI	TGGCCA	1 cut(s)	800
MseI	TTAA	5 cut(s)	462, 480, 485, 545, 1028
MslI	CAYNNNNRTG	3 cut(s)	422, 727, 1160
Msp20I	TGGCCA	1 cut(s)	800
MspA1I	CMGCKG	2 cut(s)	215, 1085
MspCI	CTTAAG	2 cut(s)	461, 479
MspR9I	CCNGG	2 cut(s)	1019, 1209
MvaI	CCWGG	2 cut(s)	1019, 1209
MwoI	GCNNNNNNNGC	3 cut(s)	110, 587, 797
NdeI	CATATG	1 cut(s)	728
NdeII	GATC	9 cut(s)	193, 330, 414, 643, 853, 967, 1050, 1078, 1092
NlaIII	CATG	3 cut(s)	625, 853, 1138
NlaIV	GGNNCC	2 cut(s)	855, 998
NmeAIII	GCCGAG	1 cut(s)	1268
NmuCI	GTSAC	2 cut(s)	974, 982
NsiI	ATGCAT	1 cut(s)	715
PceI	AGGCCT	2 cut(s)	697, 1022
PdmI	GAANNNNTTC	1 cut(s)	764
PflMI	CCANNNNNTGG	1 cut(s)	1190
PleI	GAGTC	2 cut(s)	88, 305
PpsI	GAGTC	2 cut(s)	88, 305
Ppu21I	YACGTR	1 cut(s)	982
PpuMI	RGGWCCY	1 cut(s)	1267
Psp5II	RGGWCCY	1 cut(s)	1267
Psp6I	CCWGG	2 cut(s)	1017, 1207
PspGI	CCWGG	2 cut(s)	1017, 1207
PspN4I	GGNNCC	2 cut(s)	855, 998
PspPI	GGNCC	2 cut(s)	928, 1267
PspPPI	RGGWCCY	1 cut(s)	1267
PstI	CTGCAG	3 cut(s)	328, 658, 908
PsuI	RGATCY	5 cut(s)	330, 643, 853, 1050, 1092
PvuII	CAGCTG	1 cut(s)	1085
RsaI	GTAC	1 cut(s)	874
RsaNI	GTAC	1 cut(s)	873
RseI	CAYNNNNRTG	3 cut(s)	422, 727, 1160
SaqAI	TTAA	5 cut(s)	462, 480, 485, 545, 1028
Sau3AI	GATC	9 cut(s)	193, 330, 414, 643, 853, 967, 1050, 1078, 1092
Sau96I	GGNCC	2 cut(s)	928, 1267
SchI	GAGTC	2 cut(s)	89, 305
ScrFI	CCNGG	2 cut(s)	1019, 1209
SduI	GDGCHC	3 cut(s)	181, 597, 999
SfaNI	GCATC	2 cut(s)	414, 853
SfcI	CTRYAG	4 cut(s)	324, 428, 654, 904
SinI	GGWCC	2 cut(s)	928, 1267
SmiMI	CAYNNNNRTG	3 cut(s)	422, 727, 1160
SmlI	CTYRAG	6 cut(s)	239, 461, 467, 479, 842, 1271
SmoI	CTYRAG	6 cut(s)	239, 461, 467, 479, 842, 1271
Sse9I	AATT	1 cut(s)	661
SseBI	AGGCCT	2 cut(s)	697, 1022
SsiI	CCGC	4 cut(s)	215, 611, 791, 826
SspMI	CTAG	3 cut(s)	860, 869, 965
StuI	AGGCCT	2 cut(s)	697, 1022
StyD4I	CCNGG	2 cut(s)	1017, 1207
TaiI	ACGT	1 cut(s)	984
TaqI	TCGA	2 cut(s)	165, 1043
TasI	AATT	1 cut(s)	661
TauI	GCSGC	1 cut(s)	613
Tru1I	TTAA	5 cut(s)	462, 480, 485, 545, 1028
Tru9I	TTAA	5 cut(s)	462, 480, 485, 545, 1028
TscAI	CASTG	2 cut(s)	751, 1234
TseFI	GTSAC	2 cut(s)	974, 982
TseI	GCWGC	9 cut(s)	212, 323, 340, 578, 581, 632, 656, 788, 1085
Tsp45I	GTSAC	2 cut(s)	974, 982
TspDTI	ATGAA	4 cut(s)	272, 641, 1119, 1182
TspGWI	ACGGA	1 cut(s)	23
TspRI	CASTG	2 cut(s)	751, 1234
Van91I	CCANNNNNTGG	1 cut(s)	1190
Vha464I	CTTAAG	2 cut(s)	461, 479
VneI	GTGCAC	1 cut(s)	593
VpaK11BI	GGWCC	2 cut(s)	928, 1267
XbaI	TCTAGA	1 cut(s)	964
XmiI	GTMKAC	1 cut(s)	497
XmnI	GAANNNNTTC	1 cut(s)	764
XspI	CTAG	3 cut(s)	860, 869, 965
Zsp2I	ATGCAT	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.