AT4G33320

BEST Arabidopsis thaliana protein match is Plant protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007759
Physical Location & Seq
Reverse (-)
16057038 .. 16057916
879 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G33320.1

Sequence Viewer

Length: 879 bp
ATGGAAGAGTCTATCAATCAGAATCATGAAGCTATGGAAGCACTTATCTCCAATCTCTTTGGAAACATCTCGTCTTTGAAATCTGCTTATATCGAGCTTCAAAGTGCTCATACTCCTTACGATCCCGAGAAGATTCAGGCAGCGGACAAAGTTGTCAATTCTGAACTCAAGAATCTTTCCGAAATGAAGCATTCTTACAGAGAGAATAACCCCAAGCCTGTATGTGTCTCTCCACAAGACTCTCGTTTAGCTGCAGAGATTCAAGAGCAGCAGAGTTTGTTGAAGACTTATTATGAGGTCATGGTGAAGAAGTTTCAGTCTGAGATTCAGAACAAGGATTCTGAGATCACGCAGATGCTGCAGAAGATTGAGGAAGCAAACAAGAAACGGCTTAAGCTTGAGAAGAATCTTAAGTTAAGAGGAATGTCTACAAACGAAGGTTCTGGTGGAGATGGAAATTTACAGTTTCCTGACTTGACTACTGAACTCTTTGTATCTACTTACGAAGTTGCTGCTAAAGCTGTGCATGATTTCTCCAAGCCGCTAATCAACATGATGAAAGCAGCAGGATGGGATCTTGATTCTGCAGCCAATTCTATTGAGCCTGATGTTGTTTACGCCAAGAGGCCTCACAAGAAATATGCATTTGAATCATACATATGCCAAAGGATGTTCAGTGGGTTTCAGCAGAAGAACTTCTCAGTAAACTCAGAGAGTGCTACGGTTATGGCCGATGATGACACAGACACCTTTTTCCGCCAGTTTCTTGCTCTCAAGGACATGGATCCACTAGATGCTCTAGGTACAAACCCTGATTCCAACGTTCGTTTATATGCTTGTCAAAAAGTTTTTGTAATTGTTGGGCTAACCGTAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF641

Protein Analysis

292

Amino Acids

32.98

Weight (kDa)

5.29

Isoelectric Point (pI)

46.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF641 PF04859 7 - 135 2.3e-43 Plant protein of unknown function (DUF641)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 152
AccI GTMKAC 1 cut(s) 428
AciI CCGC 3 cut(s) 143, 542, 757
AclI AACGTT 1 cut(s) 822
AclWI GGATC 4 cut(s) 116, 582, 779, 792
AcoI YGGCCR 1 cut(s) 729
AcsI RAATTY 1 cut(s) 457
AfaI GTAC 1 cut(s) 805
AflII CTTAAG 2 cut(s) 392, 410
AgsI TTSAA 5 cut(s) 79, 101, 263, 283, 650
AluBI AGCT 5 cut(s) 32, 97, 251, 397, 521
AluI AGCT 5 cut(s) 32, 97, 251, 397, 521
Alw21I GWGCWC 1 cut(s) 109
Alw26I GTCTC 1 cut(s) 232
AlwI GGATC 4 cut(s) 116, 582, 779, 792
AlwNI CAGNNNCTG 1 cut(s) 358
Ama87I CYCGRG 1 cut(s) 125
AoxI GGCC 2 cut(s) 626, 729
ApeKI GCWGC 7 cut(s) 140, 251, 268, 358, 512, 563, 587
ApoI RAATTY 1 cut(s) 457
Asp700I GAANNNNTTC 1 cut(s) 695
AsuHPI GGTGA 1 cut(s) 316
AvaI CYCGRG 1 cut(s) 125
BamHI GGATCC 1 cut(s) 784
BarI GAAGNNNNNNTAC 2 cut(s) 179, 211
BbsI GAAGAC 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 109
BbvI GCAGC 7 cut(s) 152, 238, 280, 345, 499, 575, 599
BccI CCATC 2 cut(s) 446, 564
BceAI ACGGC 1 cut(s) 404
BcgI CGANNNNNNTGC 2 cut(s) 494, 528
BcoDI GTCTC 1 cut(s) 232
BfaI CTAG 2 cut(s) 791, 800
BfmI CTRYAG 3 cut(s) 252, 359, 585
BfrI CTTAAG 2 cut(s) 392, 410
BisI GCNGC 8 cut(s) 141, 252, 269, 359, 513, 542, 564, 588
BlsI GCNGC 8 cut(s) 142, 253, 270, 360, 514, 543, 565, 589
BmeT110I CYCGRG 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 786
BmsI GCATC 2 cut(s) 345, 784
BpiI GAAGAC 1 cut(s) 290
BpuEI CTTGAG 3 cut(s) 152, 419, 758
Bse1I ACTGG 1 cut(s) 760
BseGI GGATG 2 cut(s) 575, 675
BseMII CTCAG 4 cut(s) 312, 333, 714, 723
BseNI ACTGG 1 cut(s) 760
BseXI GCAGC 7 cut(s) 152, 238, 280, 345, 499, 575, 599
BshFI GGCC 2 cut(s) 628, 731
BsiHKAI GWGCWC 1 cut(s) 109
BsiHKCI CYCGRG 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 232
BsmI GAATGC 1 cut(s) 190
BsnI GGCC 2 cut(s) 628, 731
BsoBI CYCGRG 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 109
Bsp143I GATC 4 cut(s) 121, 345, 574, 784
BspACI CCGC 3 cut(s) 143, 542, 757
BspANI GGCC 2 cut(s) 628, 731
BspCNI CTCAG 4 cut(s) 313, 334, 713, 722
BspHI TCATGA 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 786
BspMAI CTGCAG 3 cut(s) 256, 363, 589
BspPI GGATC 4 cut(s) 116, 582, 779, 792
BspTI CTTAAG 2 cut(s) 392, 410
BsrI ACTGG 1 cut(s) 760
BssMI GATC 4 cut(s) 121, 345, 574, 784
Bst4CI ACNGT 3 cut(s) 465, 724, 871
BstAFI CTTAAG 2 cut(s) 392, 410
BstAPI GCANNNNNTGC 1 cut(s) 358
BstDEI CTNAG 4 cut(s) 321, 342, 700, 709
BstF5I GGATG 2 cut(s) 575, 675
BstKTI GATC 4 cut(s) 124, 348, 577, 787
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 4 cut(s) 121, 345, 574, 784
BstMWI GCNNNNNNNGC 3 cut(s) 38, 358, 518
BstSFI CTRYAG 3 cut(s) 252, 359, 585
BstV1I GCAGC 7 cut(s) 152, 238, 280, 345, 499, 575, 599
BstV2I GAAGAC 1 cut(s) 290
BstX2I RGATCY 2 cut(s) 574, 784
BstYI RGATCY 2 cut(s) 574, 784
BsuRI GGCC 2 cut(s) 628, 731
BtsCI GGATG 2 cut(s) 575, 675
BtsIMutI CAGTG 1 cut(s) 682
CaiI CAGNNNCTG 1 cut(s) 358
CciI TCATGA 1 cut(s) 25
Csp6I GTAC 1 cut(s) 804
CviAII CATG 5 cut(s) 26, 301, 527, 553, 781
CviQI GTAC 1 cut(s) 804
DdeI CTNAG 4 cut(s) 321, 342, 700, 709
DpnI GATC 4 cut(s) 123, 347, 576, 786
DpnII GATC 4 cut(s) 121, 345, 574, 784
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
EaeI YGGCCR 1 cut(s) 729
EciI GGCGGA 1 cut(s) 746
Eco147I AGGCCT 1 cut(s) 628
Eco88I CYCGRG 1 cut(s) 125
EcoT22I ATGCAT 1 cut(s) 646
FaeI CATG 5 cut(s) 29, 304, 530, 556, 784
FatI CATG 5 cut(s) 25, 300, 526, 552, 780
FauNDI CATATG 1 cut(s) 659
FblI GTMKAC 1 cut(s) 428
Fnu4HI GCNGC 8 cut(s) 141, 252, 269, 359, 513, 542, 564, 588
FokI GGATG 2 cut(s) 582, 682
Fsp4HI GCNGC 8 cut(s) 141, 252, 269, 359, 513, 542, 564, 588
FspBI CTAG 2 cut(s) 791, 800
GluI GCNGC 8 cut(s) 141, 252, 269, 359, 513, 542, 564, 588
HaeIII GGCC 2 cut(s) 628, 731
Hin1II CATG 5 cut(s) 29, 304, 530, 556, 784
HindIII AAGCTT 1 cut(s) 395
HphI GGTGA 1 cut(s) 316
Hpy166II GTNNAC 3 cut(s) 429, 616, 706
Hpy188I TCNGA 7 cut(s) 21, 163, 181, 322, 330, 343, 712
Hpy188III TCNNGA 6 cut(s) 26, 125, 169, 263, 470, 578
Hpy8I GTNNAC 3 cut(s) 429, 616, 706
HpyAV CCTTC 1 cut(s) 431
HpyCH4III ACNGT 3 cut(s) 465, 724, 871
HpyCH4IV ACGT 1 cut(s) 822
HpyCH4V TGCA 5 cut(s) 254, 361, 526, 587, 644
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 358, 518
HpyF3I CTNAG 4 cut(s) 321, 342, 700, 709
HpySE526I ACGT 1 cut(s) 822
Hsp92II CATG 5 cut(s) 29, 304, 530, 556, 784
Kzo9I GATC 4 cut(s) 121, 345, 574, 784
LpnPI CCDG 8 cut(s) 122, 231, 429, 483, 552, 618, 773, 825
Lsp1109I GCAGC 7 cut(s) 152, 238, 280, 345, 499, 575, 599
LweI GCATC 2 cut(s) 345, 784
MaeI CTAG 2 cut(s) 791, 800
MaeII ACGT 1 cut(s) 822
MalI GATC 4 cut(s) 123, 347, 576, 786
MboI GATC 4 cut(s) 121, 345, 574, 784
MboII GAAGA 7 cut(s) 17, 142, 295, 319, 376, 415, 703
MflI RGATCY 2 cut(s) 574, 784
MhlI GDGCHC 1 cut(s) 109
MluCI AATT 5 cut(s) 157, 457, 592, 855, 873
MlyI GAGTC 2 cut(s) 17, 233
MmeI TCCRAC 1 cut(s) 843
MnlI CCTC 5 cut(s) 289, 364, 413, 618, 639
Mph1103I ATGCAT 1 cut(s) 646
MroXI GAANNNNTTC 1 cut(s) 695
MseI TTAA 3 cut(s) 393, 411, 416
MslI CAYNNNNRTG 2 cut(s) 353, 658
MspA1I CMGCKG 1 cut(s) 143
MspCI CTTAAG 2 cut(s) 392, 410
Mva1269I GAATGC 1 cut(s) 190
MwoI GCNNNNNNNGC 3 cut(s) 38, 358, 518
NdeI CATATG 1 cut(s) 659
NdeII GATC 4 cut(s) 121, 345, 574, 784
NlaIII CATG 5 cut(s) 29, 304, 530, 556, 784
NlaIV GGNNCC 1 cut(s) 786
NsiI ATGCAT 1 cut(s) 646
PagI TCATGA 1 cut(s) 25
PceI AGGCCT 1 cut(s) 628
PctI GAATGC 1 cut(s) 190
PdmI GAANNNNTTC 1 cut(s) 695
PkrI GCNGC 8 cut(s) 142, 253, 270, 360, 514, 543, 565, 589
PleI GAGTC 2 cut(s) 16, 233
PpsI GAGTC 2 cut(s) 16, 233
Psp1406I AACGTT 1 cut(s) 822
PspN4I GGNNCC 1 cut(s) 786
PstI CTGCAG 3 cut(s) 256, 363, 589
PstNI CAGNNNCTG 1 cut(s) 358
PsuI RGATCY 2 cut(s) 574, 784
RsaI GTAC 1 cut(s) 805
RsaNI GTAC 1 cut(s) 804
RseI CAYNNNNRTG 2 cut(s) 353, 658
SaqAI TTAA 3 cut(s) 393, 411, 416
SatI GCNGC 8 cut(s) 141, 252, 269, 359, 513, 542, 564, 588
Sau3AI GATC 4 cut(s) 121, 345, 574, 784
SchI GAGTC 2 cut(s) 17, 233
SduI GDGCHC 1 cut(s) 109
SfaNI GCATC 2 cut(s) 345, 784
SfcI CTRYAG 3 cut(s) 252, 359, 585
SmiMI CAYNNNNRTG 2 cut(s) 353, 658
SmlI CTYRAG 5 cut(s) 167, 392, 398, 410, 773
SmoI CTYRAG 5 cut(s) 167, 392, 398, 410, 773
Sse9I AATT 5 cut(s) 157, 457, 592, 855, 873
SseBI AGGCCT 1 cut(s) 628
SsiI CCGC 3 cut(s) 143, 542, 757
SspMI CTAG 2 cut(s) 791, 800
StuI AGGCCT 1 cut(s) 628
TaaI ACNGT 3 cut(s) 465, 724, 871
TaiI ACGT 1 cut(s) 825
TaqI TCGA 1 cut(s) 93
TasI AATT 5 cut(s) 157, 457, 592, 855, 873
TauI GCSGC 1 cut(s) 544
Tru1I TTAA 3 cut(s) 393, 411, 416
Tru9I TTAA 3 cut(s) 393, 411, 416
TscAI CASTG 1 cut(s) 682
TseI GCWGC 7 cut(s) 140, 251, 268, 358, 512, 563, 587
TspDTI ATGAA 3 cut(s) 42, 200, 572
TspRI CASTG 1 cut(s) 682
Vha464I CTTAAG 2 cut(s) 392, 410
XapI RAATTY 1 cut(s) 457
XmiI GTMKAC 1 cut(s) 428
XmnI GAANNNNTTC 1 cut(s) 695
XspI CTAG 2 cut(s) 791, 800
Zsp2I ATGCAT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.