Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0007759

Physical Location & Seq

Genomic Coordinates Forward (+)

14234855 .. 14236123

Gene Structure 1269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g16930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGCTACCCACTGGAGCAAGAGATACTCAACTTCGCGAGAGCAATAGCCAGAAGGTTCACCCACAACCCATGGAAGAGGCCATGAATCAGAATCCAGAAGCTGTGGAAGCCTTGATATCTAAGGTTTTCACGAACATCTCTTCTCTGAAATCAGCATACATTCAGCTCCAAGCTGCTCATACTCCCTATGACCCTGAAAAAATTCAAGCTGCCGATAGACTTGTAATTTCTGAGCTAAAAAACCTCTCTGAACTTAAGCATTTCTACAGGGAGAACAATCCCAGCCCAGTTTGCGTTTCTCCACAAGACTCTCGCCTAGCTGCAGAGATTCAAGAACAACAAATTCTTTTGAAAACATATGGGGTTATGGTTAAGAAATTCCAGTCTGAAATTCAAAATAAAGATTCTGAAATCCTTCAGCTCCAGCAGCATATTGAAGAGGCAAAACAGAAGCAAGCAAAGTTAGAAAAGAATCTAAAGCTCAGAGGCATGTCTACAAAAGAATCAGAAGGTTCTACTGATGAGAATGGTTTTTTGCCTGCAGATCTAACTCCCGATCTCTTCATATCGGTTGTTGAAGCTGCATATAAAGCTATTCATGACTTTTCTAAACCGTTGATTAACATGATGAAAGCGGCTGGGTGGGACCTTGATGCAGCAGCCAATTCAATTGAACCCGGTGTTATTTATGCTAAGAGACCTCACAAGAAGTATGCCTTTGAGTCACATATATGCCAAAGAATGTTTAGTGGCTTTCAGCAGGAAAGTTTTTCCCTTCAAGTAGACAATCTTACAGTGACTAAGGAGGGTTTCTTCCACCAATATGTTACATTACGGGACATGGATCGATTGGACATGCTTGGCCAAAATCCAGATTCTATTTTTGGGAGATTCTGCAGGAGCAAGTACCTGGTAGTGGTTCACCCGAAAATGGAGACTTCGTTTTTTGGGAATTTAGATCAGCGAAATTATGTAATGGGTGGAGGGCATCCAAGAACTCCATTTTACCAGGCTTTCCTAAAACTAGCCAAGTCAATATGGCTTTTGCATAGGCTGGCTCATTCTTTTGATTCCCGGGCTGAAATCTTTCAGGTCAAGAGGGGGAGTGAGTTCTCAGAGGTTTATATGGACAGTGTGGTGAAGAATTTGATAATGGATGAAAGCGATGAAAAGCCTAAGGTTGGTCTGATGGTTATGCCTGGGTTTTGGATTGGAGGTAGTGTGATTCAAAGTCGGGTTTATCTCTCTGGCATGAAGGTTGCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF641

Protein Analysis

423

Amino Acids

47.98

Weight (kDa)

6.66

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF641	PF04859	31 - 157	5.9e-45	Plant protein of unknown function (DUF641)
GIL1_IRKI_C	PF24994	362 - 414	1.2e-18	GIL1/IRKI C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45260 AT4G33320 AT4G34080 AT4G36100
fragaria_vesca	FvH4_7g11400
malus_domestica	MD02G1206300.v1.1 MD07G1118700.v1.1
prunus_persica	Prupe.2G141900_v2.0.a1 Prupe.2G141900_v2.0.a1 Prupe.2G141900_v2.0.a1 Prupe.2G141900_v2.0.a1 Prupe.2G141900_v2.0.a1
pyrus_communis	pycom02g16930 pycom07g10600
rosa_chinensis	RchiOBHm_Chr1g0349691
rosa_laevigata	RLG00000028535
rosa_roxburghii	Rroxscaffold_4G00305380
rosa_rugosa	Rorug01G0205000 Rorug01G0205100
rosa_samantha	Rh1AG222600 Rh1BG188700 Rh1CG207300 Rh1DG217800
rosa_wichuraiana	Rw1G018980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	494, 783
AccII	CGCG	1 cut(s)	36
AciI	CCGC	1 cut(s)	635
AclWI	GGATC	1 cut(s)	852
AcoI	YGGCCR	1 cut(s)	862
AcsI	RAATTY	6 cut(s)	201, 342, 377, 390, 952, 1144
AcuI	CTGAAG	1 cut(s)	401
AfaI	GTAC	1 cut(s)	908
AfiI	CCNNNNNNNGG	3 cut(s)	916, 931, 1181
AflII	CTTAAG	1 cut(s)	254
AjnI	CCWGG	3 cut(s)	909, 1008, 1198
Alw26I	GTCTC	2 cut(s)	691, 929
AlwI	GGATC	1 cut(s)	852
AlwNI	CAGNNNCTG	1 cut(s)	101
Ama87I	CYCGRG	1 cut(s)	1074
AoxI	GGCC	2 cut(s)	78, 862
ApeKI	GCWGC	7 cut(s)	173, 209, 320, 427, 581, 656, 659
ApoI	RAATTY	6 cut(s)	201, 342, 377, 390, 952, 1144
Asp700I	GAANNNNTTC	3 cut(s)	201, 414, 1086
AspS9I	GGNCC	1 cut(s)	646
AsuC2I	CCSGG	3 cut(s)	678, 1075, 1076
AsuHPI	GGTGA	3 cut(s)	50, 914, 1150
AvaI	CYCGRG	1 cut(s)	1074
AvaII	GGWCC	1 cut(s)	646
AxyI	CCTNAGG	1 cut(s)	1176
BalI	TGGCCA	1 cut(s)	864
BbvI	GCAGC	7 cut(s)	160, 196, 307, 439, 568, 668, 671
BccI	CCATC	1 cut(s)	1183
BciT130I	CCWGG	3 cut(s)	911, 1010, 1200
BcnI	CCSGG	3 cut(s)	678, 1075, 1076
BcoDI	GTCTC	2 cut(s)	691, 929
BfaI	CTAG	2 cut(s)	317, 1025
BfmI	CTRYAG	4 cut(s)	265, 321, 540, 895
BfrI	CTTAAG	1 cut(s)	254
BglII	AGATCT	1 cut(s)	544
BisI	GCNGC	8 cut(s)	174, 210, 321, 428, 582, 636, 657, 660
BlsI	GCNGC	8 cut(s)	175, 211, 322, 429, 583, 637, 658, 661
Bme1390I	CCNGG	6 cut(s)	678, 911, 1010, 1075, 1076, 1200
Bme18I	GGWCC	1 cut(s)	646
BmeT110I	CYCGRG	1 cut(s)	1074
BmgT120I	GGNCC	1 cut(s)	646
BmiI	GGNNCC	1 cut(s)	647
BmrFI	CCNGG	6 cut(s)	678, 911, 1010, 1075, 1076, 1200
BmrI	ACTGGG	1 cut(s)	281
BmsI	GCATC	2 cut(s)	643, 997
BmuI	ACTGGG	1 cut(s)	281
BpmI	CTGGAG	2 cut(s)	33, 407
BpuMI	CCSGG	3 cut(s)	678, 1075, 1076
Bsa29I	ATCGAT	1 cut(s)	847
BsaI	GGTCTC	1 cut(s)	691
BsaJI	CCNNGG	3 cut(s)	69, 1074, 1199
BsaXI	ACNNNNNCTCC	4 cut(s)	926, 956, 1206, 1236
Bsc4I	CCNNNNNNNGG	3 cut(s)	916, 931, 1181
Bse1I	ACTGG	3 cut(s)	16, 287, 382
Bse21I	CCTNAGG	1 cut(s)	1176
BseBI	CCWGG	3 cut(s)	911, 1010, 1200
BseCI	ATCGAT	1 cut(s)	847
BseDI	CCNNGG	3 cut(s)	69, 1074, 1199
BseGI	GGATG	2 cut(s)	988, 1162
BseLI	CCNNNNNNNGG	3 cut(s)	916, 931, 1181
BseMII	CTCAG	3 cut(s)	222, 496, 1128
BseNI	ACTGG	3 cut(s)	16, 287, 382
BseXI	GCAGC	7 cut(s)	160, 196, 307, 439, 568, 668, 671
BseYI	CCCAGC	2 cut(s)	281, 638
Bsh1236I	CGCG	1 cut(s)	36
BshFI	GGCC	2 cut(s)	80, 864
BshVI	ATCGAT	1 cut(s)	847
BsiHKCI	CYCGRG	1 cut(s)	1074
BsiSI	CCGG	2 cut(s)	678, 1075
BslFI	GGGAC	2 cut(s)	659, 851
BslI	CCNNNNNNNGG	3 cut(s)	916, 931, 1181
BsmAI	GTCTC	2 cut(s)	691, 929
BsmFI	GGGAC	2 cut(s)	659, 851
BsnI	GGCC	2 cut(s)	80, 864
Bso31I	GGTCTC	1 cut(s)	691
BsoBI	CYCGRG	1 cut(s)	1074
Bsp143I	GATC	4 cut(s)	544, 556, 844, 958
Bsp19I	CCATGG	1 cut(s)	69
Bsp68I	TCGCGA	1 cut(s)	36
BspACI	CCGC	1 cut(s)	635
BspANI	GGCC	2 cut(s)	80, 864
BspCNI	CTCAG	3 cut(s)	223, 495, 1127
BspDI	ATCGAT	1 cut(s)	847
BspFNI	CGCG	1 cut(s)	36
BspHI	TCATGA	1 cut(s)	598
BspLI	GGNNCC	1 cut(s)	647
BspMAI	CTGCAG	3 cut(s)	325, 544, 899
BspPI	GGATC	1 cut(s)	852
BspTI	CTTAAG	1 cut(s)	254
BspTNI	GGTCTC	1 cut(s)	691
BsrI	ACTGG	3 cut(s)	16, 287, 382
BssECI	CCNNGG	3 cut(s)	69, 1074, 1199
BssMI	GATC	4 cut(s)	544, 556, 844, 958
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	3 cut(s)	911, 1010, 1200
Bst4CI	ACNGT	3 cut(s)	615, 796, 1133
Bst6I	CTCTTC	4 cut(s)	69, 145, 432, 566
BstAFI	CTTAAG	1 cut(s)	254
BstC8I	GCNNGC	3 cut(s)	456, 540, 1056
BstDEI	CTNAG	7 cut(s)	120, 231, 482, 693, 801, 1114, 1176
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	2 cut(s)	988, 1162
BstFNI	CGCG	1 cut(s)	36
BstKTI	GATC	4 cut(s)	547, 559, 847, 961
BstMAI	GTCTC	2 cut(s)	691, 929
BstMBI	GATC	4 cut(s)	544, 556, 844, 958
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 291, 427, 590
BstNI	CCWGG	3 cut(s)	911, 1010, 1200
BstNSI	RCATGY	2 cut(s)	493, 859
BstSCI	CCNGG	6 cut(s)	676, 909, 1008, 1073, 1074, 1198
BstSFI	CTRYAG	4 cut(s)	265, 321, 540, 895
BstUI	CGCG	1 cut(s)	36
BstV1I	GCAGC	7 cut(s)	160, 196, 307, 439, 568, 668, 671
BstX2I	RGATCY	1 cut(s)	544
BstYI	RGATCY	1 cut(s)	544
Bsu15I	ATCGAT	1 cut(s)	847
Bsu36I	CCTNAGG	1 cut(s)	1176
BsuRI	GGCC	2 cut(s)	80, 864
BsuTUI	ATCGAT	1 cut(s)	847
BtgI	CCRYGG	1 cut(s)	69
BtgZI	GCGATG	1 cut(s)	1179
BtsCI	GGATG	2 cut(s)	988, 1162
BtsIMutI	CAGTG	3 cut(s)	9, 801, 1138
BtuMI	TCGCGA	1 cut(s)	36
Cac8I	GCNNGC	3 cut(s)	456, 540, 1056
CaiI	CAGNNNCTG	1 cut(s)	101
CciI	TCATGA	1 cut(s)	598
Cfr13I	GGNCC	1 cut(s)	646
Cfr9I	CCCGGG	1 cut(s)	1074
ClaI	ATCGAT	1 cut(s)	847
CsiI	ACCWGGT	1 cut(s)	909
Csp6I	GTAC	1 cut(s)	907
CviAII	CATG	8 cut(s)	70, 82, 490, 599, 625, 841, 856, 1252
CviQI	GTAC	1 cut(s)	907
DdeI	CTNAG	7 cut(s)	120, 231, 482, 693, 801, 1114, 1176
DpnI	GATC	4 cut(s)	546, 558, 846, 960
DpnII	GATC	4 cut(s)	544, 556, 844, 958
EaeI	YGGCCR	1 cut(s)	862
Eam1104I	CTCTTC	4 cut(s)	69, 145, 432, 566
EarI	CTCTTC	4 cut(s)	69, 145, 432, 566
Eco130I	CCWWGG	1 cut(s)	69
Eco31I	GGTCTC	1 cut(s)	691
Eco32I	GATATC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	646
Eco57I	CTGAAG	1 cut(s)	401
Eco81I	CCTNAGG	1 cut(s)	1176
Eco88I	CYCGRG	1 cut(s)	1074
EcoO109I	RGGNCCY	1 cut(s)	646
EcoRII	CCWGG	3 cut(s)	909, 1008, 1198
EcoRV	GATATC	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	8 cut(s)	73, 85, 493, 602, 628, 844, 859, 1255
FalI	AAGNNNNNCTT	2 cut(s)	701, 733
FaqI	GGGAC	2 cut(s)	659, 851
FatI	CATG	8 cut(s)	69, 81, 489, 598, 624, 840, 855, 1251
FauNDI	CATATG	1 cut(s)	358
FblI	GTMKAC	2 cut(s)	494, 783
Fnu4HI	GCNGC	8 cut(s)	174, 210, 321, 428, 582, 636, 657, 660
FokI	GGATG	2 cut(s)	975, 1169
Fsp4HI	GCNGC	8 cut(s)	174, 210, 321, 428, 582, 636, 657, 660
FspBI	CTAG	2 cut(s)	317, 1025
GluI	GCNGC	8 cut(s)	174, 210, 321, 428, 582, 636, 657, 660
GsaI	CCCAGC	2 cut(s)	285, 642
GsuI	CTGGAG	2 cut(s)	33, 407
HaeIII	GGCC	2 cut(s)	80, 864
HapII	CCGG	2 cut(s)	678, 1075
Hin1II	CATG	8 cut(s)	73, 85, 493, 602, 628, 844, 859, 1255
HpaII	CCGG	2 cut(s)	678, 1075
HphI	GGTGA	3 cut(s)	50, 914, 1150
Hpy166II	GTNNAC	4 cut(s)	58, 495, 784, 922
Hpy188III	TCNNGA	8 cut(s)	35, 95, 130, 332, 554, 599, 872, 1096
Hpy8I	GTNNAC	4 cut(s)	58, 495, 784, 922
HpyAV	CCTTC	5 cut(s)	46, 425, 503, 785, 1249
HpyCH4III	ACNGT	3 cut(s)	615, 796, 1133
HpyCH4V	TGCA	6 cut(s)	323, 542, 584, 656, 897, 1048
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 291, 427, 590
HpyF3I	CTNAG	7 cut(s)	120, 231, 482, 693, 801, 1114, 1176
Hsp92II	CATG	8 cut(s)	73, 85, 493, 602, 628, 844, 859, 1255
Kzo9I	GATC	4 cut(s)	544, 556, 844, 958
LmnI	GCTCC	4 cut(s)	14, 171, 426, 900
Lsp1109I	GCAGC	7 cut(s)	160, 196, 307, 439, 568, 668, 671
LweI	GCATC	2 cut(s)	643, 997
MabI	ACCWGGT	1 cut(s)	909
MaeI	CTAG	2 cut(s)	317, 1025
MaeIII	GTNAC	3 cut(s)	723, 796, 826
MalI	GATC	4 cut(s)	546, 558, 846, 960
MboI	GATC	4 cut(s)	544, 556, 844, 958
MboII	GAAGA	6 cut(s)	86, 132, 449, 553, 805, 1153
MfeI	CAATTG	1 cut(s)	669
MflI	RGATCY	1 cut(s)	544
MlsI	TGGCCA	1 cut(s)	864
MluNI	TGGCCA	1 cut(s)	864
MlyI	GAGTC	2 cut(s)	302, 731
Mox20I	TGGCCA	1 cut(s)	864
MroXI	GAANNNNTTC	3 cut(s)	201, 414, 1086
MscI	TGGCCA	1 cut(s)	864
MseI	TTAA	3 cut(s)	255, 372, 621
MslI	CAYNNNNRTG	2 cut(s)	730, 822
Msp20I	TGGCCA	1 cut(s)	864
MspCI	CTTAAG	1 cut(s)	254
MspI	CCGG	2 cut(s)	678, 1075
MspR9I	CCNGG	6 cut(s)	678, 911, 1010, 1075, 1076, 1200
MunI	CAATTG	1 cut(s)	669
MvaI	CCWGG	3 cut(s)	911, 1010, 1200
MvnI	CGCG	1 cut(s)	36
MwoI	GCNNNNNNNGC	4 cut(s)	107, 291, 427, 590
NciI	CCSGG	3 cut(s)	678, 1075, 1076
NcoI	CCATGG	1 cut(s)	69
NdeI	CATATG	1 cut(s)	358
NdeII	GATC	4 cut(s)	544, 556, 844, 958
NlaIII	CATG	8 cut(s)	73, 85, 493, 602, 628, 844, 859, 1255
NlaIV	GGNNCC	1 cut(s)	647
NmuCI	GTSAC	2 cut(s)	723, 796
NruI	TCGCGA	1 cut(s)	36
NspI	RCATGY	2 cut(s)	493, 859
PagI	TCATGA	1 cut(s)	598
PdmI	GAANNNNTTC	3 cut(s)	201, 414, 1086
PkrI	GCNGC	8 cut(s)	175, 211, 322, 429, 583, 637, 658, 661
PleI	GAGTC	2 cut(s)	302, 730
PpsI	GAGTC	2 cut(s)	302, 730
PpuMI	RGGWCCY	1 cut(s)	646
Psp5II	RGGWCCY	1 cut(s)	646
Psp6I	CCWGG	3 cut(s)	909, 1008, 1198
PspFI	CCCAGC	2 cut(s)	281, 638
PspGI	CCWGG	3 cut(s)	909, 1008, 1198
PspN4I	GGNNCC	1 cut(s)	647
PspPI	GGNCC	1 cut(s)	646
PspPPI	RGGWCCY	1 cut(s)	646
PstI	CTGCAG	3 cut(s)	325, 544, 899
PstNI	CAGNNNCTG	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	544
RruI	TCGCGA	1 cut(s)	36
RsaI	GTAC	1 cut(s)	908
RsaNI	GTAC	1 cut(s)	907
RseI	CAYNNNNRTG	2 cut(s)	730, 822
SaqAI	TTAA	3 cut(s)	255, 372, 621
SatI	GCNGC	8 cut(s)	174, 210, 321, 428, 582, 636, 657, 660
Sau3AI	GATC	4 cut(s)	544, 556, 844, 958
Sau96I	GGNCC	1 cut(s)	646
SchI	GAGTC	2 cut(s)	302, 731
ScrFI	CCNGG	6 cut(s)	678, 911, 1010, 1075, 1076, 1200
SexAI	ACCWGGT	1 cut(s)	909
SfaNI	GCATC	2 cut(s)	643, 997
SfcI	CTRYAG	4 cut(s)	265, 321, 540, 895
SinI	GGWCC	1 cut(s)	646
SmaI	CCCGGG	1 cut(s)	1076
SmiMI	CAYNNNNRTG	2 cut(s)	730, 822
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SsiI	CCGC	1 cut(s)	635
SspMI	CTAG	2 cut(s)	317, 1025
StyD4I	CCNGG	6 cut(s)	676, 909, 1008, 1073, 1074, 1198
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	3 cut(s)	615, 796, 1133
TaqI	TCGA	1 cut(s)	847
TauI	GCSGC	1 cut(s)	638
Tru1I	TTAA	3 cut(s)	255, 372, 621
Tru9I	TTAA	3 cut(s)	255, 372, 621
TscAI	CASTG	3 cut(s)	16, 801, 1138
TseFI	GTSAC	2 cut(s)	723, 796
TseI	GCWGC	7 cut(s)	173, 209, 320, 427, 581, 656, 659
Tsp45I	GTSAC	2 cut(s)	723, 796
TspDTI	ATGAA	7 cut(s)	98, 553, 587, 644, 1173, 1182, 1268
TspMI	CCCGGG	1 cut(s)	1074
TspRI	CASTG	3 cut(s)	16, 801, 1138
Vha464I	CTTAAG	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	646
XapI	RAATTY	6 cut(s)	201, 342, 377, 390, 952, 1144
XceI	RCATGY	2 cut(s)	493, 859
XmaI	CCCGGG	1 cut(s)	1074
XmiI	GTMKAC	2 cut(s)	494, 783
XmnI	GAANNNNTTC	3 cut(s)	201, 414, 1086
XspI	CTAG	2 cut(s)	317, 1025

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.