Rorug01G0205000

Plant protein of unknown function (DUF641)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0007759
Physical Location & Seq
Forward (+)
28768944 .. 28769441
498 bp
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UTR
Exon/CDS
Intron
Rorug01G0205000.1

Sequence Viewer

Length: 498 bp
ATGGATTTGGATATTCTAAGTTGGAATTGCAGAGGGATCTGCAACGATACTACTACGAGGGCATTGAAAGATTTGATATCTCAAAATCGTCCTCAAATTGTTTTTATCTGTGAAACCAAAATCAGTAATCTATCTGATTTCAAAGCATTACACGCTGCTTTAGGGTTTCCTAATTCCCAGGAGGTTCTAAGTGATGGGCAGTCTGGTGGATTGGGAATGTTTTGGAGCGATGACGTGAAAGCGAAGATTGGTACTGTTTCAAACCATCACATGGATCTGTTCATTGATGGTGGGATTGGAAACCTTAGATGGAGAATAACAGGGTTTTATGGCTATCCAAGTACGGCTGAACGTGATCGTTCCTGGCAGCTTTTACGTGATTTGCGAGATCTGGATGTACTGCCATGGGTTGTGATTGGGGATTTCAATGAAATCCTCAATAACAGCGAGAAAATAGATGGTCCGATGAGGGCAGAACGACAGATGCGAGGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF641

Protein Analysis

165

Amino Acids

18.68

Weight (kDa)

5.32

Isoelectric Point (pI)

29.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 6 - 155 1.3e-14 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 271
AclWI GGATC 2 cut(s) 44, 282
AfaI GTAC 3 cut(s) 253, 343, 399
AfiI CCNNNNNNNGG 1 cut(s) 271
AgsI TTSAA 4 cut(s) 67, 142, 261, 427
AjiI CACGTC 1 cut(s) 235
AjnI CCWGG 2 cut(s) 177, 362
AluBI AGCT 1 cut(s) 370
AluI AGCT 1 cut(s) 370
AlwI GGATC 2 cut(s) 44, 282
ApeKI GCWGC 2 cut(s) 155, 367
AspS9I GGNCC 1 cut(s) 461
AvaII GGWCC 1 cut(s) 461
BbvI GCAGC 2 cut(s) 142, 379
BccI CCATC 5 cut(s) 188, 273, 281, 303, 452
BceAI ACGGC 1 cut(s) 360
BciT130I CCWGG 2 cut(s) 179, 364
BglII AGATCT 1 cut(s) 388
BisI GCNGC 2 cut(s) 156, 368
BlsI GCNGC 2 cut(s) 157, 369
Bme1390I CCNGG 2 cut(s) 179, 364
Bme18I GGWCC 1 cut(s) 461
BmgBI CACGTC 1 cut(s) 235
BmgT120I GGNCC 1 cut(s) 461
BmrFI CCNGG 2 cut(s) 179, 364
BmsI GCATC 1 cut(s) 474
BsaAI YACGTR 1 cut(s) 377
BsaJI CCNNGG 2 cut(s) 177, 404
Bsc4I CCNNNNNNNGG 1 cut(s) 271
BseBI CCWGG 2 cut(s) 179, 364
BseDI CCNNGG 2 cut(s) 177, 404
BseGI GGATG 1 cut(s) 400
BseLI CCNNNNNNNGG 1 cut(s) 271
BseXI GCAGC 2 cut(s) 142, 379
BslI CCNNNNNNNGG 1 cut(s) 271
Bsp143I GATC 4 cut(s) 36, 274, 355, 388
Bsp19I CCATGG 1 cut(s) 404
BspPI GGATC 2 cut(s) 44, 282
BssECI CCNNGG 2 cut(s) 177, 404
BssMI GATC 4 cut(s) 36, 274, 355, 388
BssT1I CCWWGG 1 cut(s) 404
Bst2UI CCWGG 2 cut(s) 179, 364
Bst4CI ACNGT 1 cut(s) 256
BstBAI YACGTR 1 cut(s) 377
BstDEI CTNAG 3 cut(s) 17, 188, 305
BstDSI CCRYGG 1 cut(s) 404
BstF5I GGATG 1 cut(s) 400
BstKTI GATC 4 cut(s) 39, 277, 358, 391
BstMBI GATC 4 cut(s) 36, 274, 355, 388
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 2 cut(s) 179, 364
BstSCI CCNGG 2 cut(s) 177, 362
BstV1I GCAGC 2 cut(s) 142, 379
BstX2I RGATCY 3 cut(s) 36, 274, 388
BstYI RGATCY 3 cut(s) 36, 274, 388
BtgI CCRYGG 1 cut(s) 404
BtgZI GCGATG 1 cut(s) 243
BtrI CACGTC 1 cut(s) 235
BtsCI GGATG 1 cut(s) 400
Cfr13I GGNCC 1 cut(s) 461
Csp6I GTAC 3 cut(s) 252, 342, 398
CviAII CATG 2 cut(s) 271, 405
CviJI RGCY 3 cut(s) 333, 347, 370
CviKI_1 RGCY 3 cut(s) 333, 347, 370
CviQI GTAC 3 cut(s) 252, 342, 398
DdeI CTNAG 3 cut(s) 17, 188, 305
DpnI GATC 4 cut(s) 38, 276, 357, 390
DpnII GATC 4 cut(s) 36, 274, 355, 388
Eco130I CCWWGG 1 cut(s) 404
Eco32I GATATC 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 461
EcoRII CCWGG 2 cut(s) 177, 362
EcoRV GATATC 1 cut(s) 78
EcoT14I CCWWGG 1 cut(s) 404
ErhI CCWWGG 1 cut(s) 404
FaeI CATG 2 cut(s) 274, 408
FaiI YATR 3 cut(s) 272, 330, 406
FatI CATG 2 cut(s) 270, 404
Fnu4HI GCNGC 2 cut(s) 156, 368
FokI GGATG 1 cut(s) 407
Fsp4HI GCNGC 2 cut(s) 156, 368
GluI GCNGC 2 cut(s) 156, 368
Hin1II CATG 2 cut(s) 274, 408
Hpy188I TCNGA 2 cut(s) 136, 465
Hpy188III TCNNGA 1 cut(s) 392
HpyCH4III ACNGT 1 cut(s) 256
HpyCH4IV ACGT 3 cut(s) 234, 352, 376
HpyCH4V TGCA 2 cut(s) 30, 42
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 3 cut(s) 17, 188, 305
HpySE526I ACGT 3 cut(s) 234, 352, 376
Hsp92II CATG 2 cut(s) 274, 408
Kzo9I GATC 4 cut(s) 36, 274, 355, 388
LmnI GCTCC 1 cut(s) 225
LpnPI CCDG 7 cut(s) 164, 189, 191, 306, 349, 376, 377
Lsp1109I GCAGC 2 cut(s) 142, 379
LweI GCATC 1 cut(s) 474
MaeII ACGT 3 cut(s) 234, 352, 376
MalI GATC 4 cut(s) 38, 276, 357, 390
MboI GATC 4 cut(s) 36, 274, 355, 388
MboII GAAGA 1 cut(s) 256
MflI RGATCY 3 cut(s) 36, 274, 388
MluCI AATT 3 cut(s) 25, 96, 172
MnlI CCTC 7 cut(s) 26, 51, 102, 175, 446, 462, 482
MspR9I CCNGG 2 cut(s) 179, 364
MvaI CCWGG 2 cut(s) 179, 364
MwoI GCNNNNNNNGC 1 cut(s) 152
NcoI CCATGG 1 cut(s) 404
NdeII GATC 4 cut(s) 36, 274, 355, 388
NlaIII CATG 2 cut(s) 274, 408
PcsI WCGNNNNNNNCGW 2 cut(s) 382, 484
PflMI CCANNNNNTGG 1 cut(s) 271
PkrI GCNGC 2 cut(s) 157, 369
Ppu21I YACGTR 1 cut(s) 377
Psp6I CCWGG 2 cut(s) 177, 362
PspGI CCWGG 2 cut(s) 177, 362
PspPI GGNCC 1 cut(s) 461
PsuI RGATCY 3 cut(s) 36, 274, 388
RsaI GTAC 3 cut(s) 253, 343, 399
RsaNI GTAC 3 cut(s) 252, 342, 398
SatI GCNGC 2 cut(s) 156, 368
Sau3AI GATC 4 cut(s) 36, 274, 355, 388
Sau96I GGNCC 1 cut(s) 461
ScrFI CCNGG 2 cut(s) 179, 364
SetI ASST 7 cut(s) 186, 237, 306, 355, 372, 379, 493
SfaNI GCATC 1 cut(s) 474
SinI GGWCC 1 cut(s) 461
Sse9I AATT 3 cut(s) 25, 96, 172
StyD4I CCNGG 2 cut(s) 177, 362
StyI CCWWGG 1 cut(s) 404
TaaI ACNGT 1 cut(s) 256
TaiI ACGT 3 cut(s) 237, 355, 379
TasI AATT 3 cut(s) 25, 96, 172
TatI WGTACW 1 cut(s) 397
TseI GCWGC 2 cut(s) 155, 367
TspDTI ATGAA 2 cut(s) 271, 444
Van91I CCANNNNNTGG 1 cut(s) 271
VpaK11BI GGWCC 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.