AT4G34080

BEST Arabidopsis thaliana protein match is Plant protein of

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007759
Physical Location & Seq
Forward (+)
16326952 .. 16327797
846 bp
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UTR
Exon/CDS
Intron
AT4G34080.1

Sequence Viewer

Length: 846 bp
ATGGAAGAGTCTATCAATCAAAATCCTGAAGCTATGGAAGCACTTATCTCCAATCTCTTTGGAAACATCTCGTCTTTGAAATCTGCTTATATCGAGCTTCAAAGTGCTCATACTCCTTACGATCCCGAGAAGATTCAGGCAGCGGACAAAGTTGTCATTTCTGAACTCAAGAATCTTTCCGAAATGAAGCATTTTTACAGAGAGAATAACCCCAAGCCTGTATGTGTCTCTCCACAAGACTCTCGTTTAGCTGCAGAGATTCAAGAGCAGCAGAGTTTGTTGAAGACTTATGAGGTCATGGTGAAGAAGTTTCAGTCTGAGATTCAGAACAAGGATTCCGAGATCACGCAGATGCTGCAGAAGATTGAGGAAGCAAACCAGAAACGGCTTAAGCTTGAGAAGAATCTTAAGTTAAGAGGAATGTCTACAAACCAAGGTTCTGGTGGAGATGGAAATTTACAGTTTCCTGACTTGACTACTGAACTCTTTGTATCTACTTACGAAGCTGCTGCTAAAGTTGTGCATGATTTCTCCAAGCCGCTAATCAACATGATGAAAGCAGCAGGATGGGATCTTGATACTGCAGCCAATTCTATTGAGCCTGATGTTGTTTACGCCAAGAGGCCTCACAAGGAATATGCATTTGAATCATACATATGCCAAAGGATGTTCAGTGGGTTTCAGCAGAAGAACTTCTCAGTAAACTCAGAGAGTGCTACGGTTATGGCCGATGATGACACAGACACCTTTTTCCGCCAGTTTCTTGCTCTCAAGGACATGGATCCACTAGATGCTCTAGGTACAAACCCTGATTCCAACTTTGGTATATTCTGCAGGAGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF641

Protein Analysis

281

Amino Acids

31.78

Weight (kDa)

5.04

Isoelectric Point (pI)

45.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF641 PF04859 8 - 134 7.3e-47 Plant protein of unknown function (DUF641)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 152
AccI GTMKAC 1 cut(s) 425
AciI CCGC 3 cut(s) 143, 539, 754
AclWI GGATC 4 cut(s) 116, 579, 776, 789
AcoI YGGCCR 1 cut(s) 726
AcsI RAATTY 1 cut(s) 454
AcuI CTGAAG 1 cut(s) 48
AfaI GTAC 1 cut(s) 802
AflII CTTAAG 2 cut(s) 389, 407
AgsI TTSAA 5 cut(s) 79, 101, 263, 283, 647
AloI GAACNNNNNNTCC 2 cut(s) 320, 352
AluBI AGCT 5 cut(s) 32, 97, 251, 394, 506
AluI AGCT 5 cut(s) 32, 97, 251, 394, 506
Alw21I GWGCWC 1 cut(s) 109
Alw26I GTCTC 1 cut(s) 232
AlwI GGATC 4 cut(s) 116, 579, 776, 789
AlwNI CAGNNNCTG 1 cut(s) 355
Ama87I CYCGRG 1 cut(s) 125
AoxI GGCC 2 cut(s) 623, 726
ApeKI GCWGC 8 cut(s) 140, 251, 268, 355, 506, 509, 560, 584
ApoI RAATTY 1 cut(s) 454
Asp700I GAANNNNTTC 1 cut(s) 692
AsuHPI GGTGA 1 cut(s) 313
AvaI CYCGRG 1 cut(s) 125
BamHI GGATCC 1 cut(s) 781
BarI GAAGNNNNNNTAC 2 cut(s) 179, 211
BbsI GAAGAC 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 109
BbvI GCAGC 8 cut(s) 152, 238, 280, 342, 493, 496, 572, 596
BccI CCATC 2 cut(s) 443, 561
BceAI ACGGC 1 cut(s) 401
BcgI CGANNNNNNTGC 2 cut(s) 491, 525
BcoDI GTCTC 1 cut(s) 232
BfaI CTAG 2 cut(s) 788, 797
BfmI CTRYAG 4 cut(s) 252, 356, 582, 832
BfrI CTTAAG 2 cut(s) 389, 407
BisI GCNGC 9 cut(s) 141, 252, 269, 356, 507, 510, 539, 561, 585
BlsI GCNGC 9 cut(s) 142, 253, 270, 357, 508, 511, 540, 562, 586
BmeT110I CYCGRG 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 783
BmsI GCATC 2 cut(s) 342, 781
BpiI GAAGAC 1 cut(s) 290
BpuEI CTTGAG 3 cut(s) 152, 416, 755
BsaJI CCNNGG 1 cut(s) 433
Bse1I ACTGG 1 cut(s) 757
BseDI CCNNGG 1 cut(s) 433
BseGI GGATG 2 cut(s) 572, 672
BseMII CTCAG 3 cut(s) 309, 711, 720
BseNI ACTGG 1 cut(s) 757
BseXI GCAGC 8 cut(s) 152, 238, 280, 342, 493, 496, 572, 596
BshFI GGCC 2 cut(s) 625, 728
BsiHKAI GWGCWC 1 cut(s) 109
BsiHKCI CYCGRG 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 232
BsnI GGCC 2 cut(s) 625, 728
BsoBI CYCGRG 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 109
Bsp143I GATC 4 cut(s) 121, 342, 571, 781
BspACI CCGC 3 cut(s) 143, 539, 754
BspANI GGCC 2 cut(s) 625, 728
BspCNI CTCAG 3 cut(s) 310, 710, 719
BspLI GGNNCC 1 cut(s) 783
BspMAI CTGCAG 4 cut(s) 256, 360, 586, 836
BspPI GGATC 4 cut(s) 116, 579, 776, 789
BspTI CTTAAG 2 cut(s) 389, 407
BsrI ACTGG 1 cut(s) 757
BssECI CCNNGG 1 cut(s) 433
BssMI GATC 4 cut(s) 121, 342, 571, 781
BssT1I CCWWGG 1 cut(s) 433
Bst4CI ACNGT 2 cut(s) 462, 721
BstAFI CTTAAG 2 cut(s) 389, 407
BstAPI GCANNNNNTGC 1 cut(s) 355
BstDEI CTNAG 3 cut(s) 318, 697, 706
BstF5I GGATG 2 cut(s) 572, 672
BstKTI GATC 4 cut(s) 124, 345, 574, 784
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 4 cut(s) 121, 342, 571, 781
BstMWI GCNNNNNNNGC 2 cut(s) 38, 355
BstSFI CTRYAG 4 cut(s) 252, 356, 582, 832
BstV1I GCAGC 8 cut(s) 152, 238, 280, 342, 493, 496, 572, 596
BstV2I GAAGAC 1 cut(s) 290
BstX2I RGATCY 2 cut(s) 571, 781
BstXI CCANNNNNNTGG 1 cut(s) 440
BstYI RGATCY 2 cut(s) 571, 781
BsuRI GGCC 2 cut(s) 625, 728
BtsCI GGATG 2 cut(s) 572, 672
BtsIMutI CAGTG 1 cut(s) 679
CaiI CAGNNNCTG 1 cut(s) 355
Csp6I GTAC 1 cut(s) 801
CviAII CATG 4 cut(s) 298, 524, 550, 778
CviQI GTAC 1 cut(s) 801
DdeI CTNAG 3 cut(s) 318, 697, 706
DpnI GATC 4 cut(s) 123, 344, 573, 783
DpnII GATC 4 cut(s) 121, 342, 571, 781
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
EaeI YGGCCR 1 cut(s) 726
EciI GGCGGA 1 cut(s) 743
Eco130I CCWWGG 1 cut(s) 433
Eco147I AGGCCT 1 cut(s) 625
Eco57I CTGAAG 1 cut(s) 48
Eco88I CYCGRG 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 433
EcoT22I ATGCAT 1 cut(s) 643
ErhI CCWWGG 1 cut(s) 433
FaeI CATG 4 cut(s) 301, 527, 553, 781
FatI CATG 4 cut(s) 297, 523, 549, 777
FauNDI CATATG 1 cut(s) 656
FblI GTMKAC 1 cut(s) 425
Fnu4HI GCNGC 9 cut(s) 141, 252, 269, 356, 507, 510, 539, 561, 585
FokI GGATG 2 cut(s) 579, 679
Fsp4HI GCNGC 9 cut(s) 141, 252, 269, 356, 507, 510, 539, 561, 585
FspBI CTAG 2 cut(s) 788, 797
GluI GCNGC 9 cut(s) 141, 252, 269, 356, 507, 510, 539, 561, 585
HaeIII GGCC 2 cut(s) 625, 728
Hin1II CATG 4 cut(s) 301, 527, 553, 781
HindIII AAGCTT 1 cut(s) 392
HphI GGTGA 1 cut(s) 313
Hpy166II GTNNAC 3 cut(s) 426, 613, 703
Hpy188I TCNGA 6 cut(s) 163, 181, 319, 327, 340, 709
Hpy188III TCNNGA 6 cut(s) 26, 125, 169, 263, 467, 575
Hpy8I GTNNAC 3 cut(s) 426, 613, 703
HpyCH4III ACNGT 2 cut(s) 462, 721
HpyCH4V TGCA 6 cut(s) 254, 358, 523, 584, 641, 834
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 355
HpyF3I CTNAG 3 cut(s) 318, 697, 706
Hsp92II CATG 4 cut(s) 301, 527, 553, 781
Kzo9I GATC 4 cut(s) 121, 342, 571, 781
LmnI GCTCC 1 cut(s) 837
Lsp1109I GCAGC 8 cut(s) 152, 238, 280, 342, 493, 496, 572, 596
LweI GCATC 2 cut(s) 342, 781
MaeI CTAG 2 cut(s) 788, 797
MalI GATC 4 cut(s) 123, 344, 573, 783
MboI GATC 4 cut(s) 121, 342, 571, 781
MboII GAAGA 7 cut(s) 17, 142, 295, 316, 373, 412, 700
MflI RGATCY 2 cut(s) 571, 781
MhlI GDGCHC 1 cut(s) 109
MluCI AATT 2 cut(s) 454, 589
MlyI GAGTC 2 cut(s) 17, 233
MmeI TCCRAC 1 cut(s) 840
MnlI CCTC 5 cut(s) 286, 361, 410, 615, 636
Mph1103I ATGCAT 1 cut(s) 643
MroXI GAANNNNTTC 1 cut(s) 692
MseI TTAA 3 cut(s) 390, 408, 413
MslI CAYNNNNRTG 2 cut(s) 350, 655
MspA1I CMGCKG 1 cut(s) 143
MspCI CTTAAG 2 cut(s) 389, 407
MwoI GCNNNNNNNGC 2 cut(s) 38, 355
NdeI CATATG 1 cut(s) 656
NdeII GATC 4 cut(s) 121, 342, 571, 781
NlaIII CATG 4 cut(s) 301, 527, 553, 781
NlaIV GGNNCC 1 cut(s) 783
NsiI ATGCAT 1 cut(s) 643
PceI AGGCCT 1 cut(s) 625
PdmI GAANNNNTTC 1 cut(s) 692
PfeI GAWTC 8 cut(s) 133, 172, 259, 322, 335, 403, 647, 812
PkrI GCNGC 9 cut(s) 142, 253, 270, 357, 508, 511, 540, 562, 586
PleI GAGTC 2 cut(s) 16, 233
PpsI GAGTC 2 cut(s) 16, 233
PspN4I GGNNCC 1 cut(s) 783
PstI CTGCAG 4 cut(s) 256, 360, 586, 836
PstNI CAGNNNCTG 1 cut(s) 355
PsuI RGATCY 2 cut(s) 571, 781
RsaI GTAC 1 cut(s) 802
RsaNI GTAC 1 cut(s) 801
RseI CAYNNNNRTG 2 cut(s) 350, 655
SaqAI TTAA 3 cut(s) 390, 408, 413
SatI GCNGC 9 cut(s) 141, 252, 269, 356, 507, 510, 539, 561, 585
Sau3AI GATC 4 cut(s) 121, 342, 571, 781
SchI GAGTC 2 cut(s) 17, 233
SduI GDGCHC 1 cut(s) 109
SetI ASST 9 cut(s) 34, 99, 253, 297, 396, 439, 508, 749, 802
SfaNI GCATC 2 cut(s) 342, 781
SfcI CTRYAG 4 cut(s) 252, 356, 582, 832
SmiMI CAYNNNNRTG 2 cut(s) 350, 655
SmlI CTYRAG 5 cut(s) 167, 389, 395, 407, 770
SmoI CTYRAG 5 cut(s) 167, 389, 395, 407, 770
Sse9I AATT 2 cut(s) 454, 589
SseBI AGGCCT 1 cut(s) 625
SsiI CCGC 3 cut(s) 143, 539, 754
SspMI CTAG 2 cut(s) 788, 797
StuI AGGCCT 1 cut(s) 625
StyI CCWWGG 1 cut(s) 433
TaaI ACNGT 2 cut(s) 462, 721
TaqI TCGA 1 cut(s) 93
TasI AATT 2 cut(s) 454, 589
TauI GCSGC 1 cut(s) 541
TfiI GAWTC 8 cut(s) 133, 172, 259, 322, 335, 403, 647, 812
Tru1I TTAA 3 cut(s) 390, 408, 413
Tru9I TTAA 3 cut(s) 390, 408, 413
TscAI CASTG 1 cut(s) 679
TseI GCWGC 8 cut(s) 140, 251, 268, 355, 506, 509, 560, 584
TspDTI ATGAA 2 cut(s) 200, 569
TspRI CASTG 1 cut(s) 679
Vha464I CTTAAG 2 cut(s) 389, 407
XapI RAATTY 1 cut(s) 454
XcmI CCANNNNNNNNNTGG 1 cut(s) 440
XmiI GTMKAC 1 cut(s) 425
XmnI GAANNNNTTC 1 cut(s) 692
XspI CTAG 2 cut(s) 788, 797
Zsp2I ATGCAT 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.