Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0007759

Physical Location & Seq

Genomic Coordinates Forward (+)

28769842 .. 28770261

Gene Structure 420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0205100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGCAGATGCTTGGCATTAGAGCGAGACTGGAAGAGCTCCTTGATGTTCGGTGTTCAGCTGCAGTGACAGAAGAGAAGAAACAGTTGATGGAGAATTTGCAGCGACTTCTTTCACAAGAAGAGAGCTTTTGGAAACAACGATCTAAAGTACAGTGGTTAAAGGAAGAGGATAGGAACACAGGCTATTTCCACAGGAAGTCTGCTAATCGGAGAAGGAAAAATACCCTTTGTGGGTTATATGATGAAAATGGTGAATGGTGTGATGACGAAAGAGGTATGGAAAATGTAATTACCTCTTATTTCTCTTCTATGTTCACTGCAACTGACATTGACAATGATGCCATGAATACTACCTTGGAAGCCATTCATCCTTGCGTTTCGCATGAAATGAATGAAAAATTGTGCGCACAGTATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF641

Protein Analysis

139

Amino Acids

16.35

Weight (kDa)

5.28

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45260 AT4G33320 AT4G34080 AT4G36100
fragaria_vesca	FvH4_7g11400
malus_domestica	MD02G1206300.v1.1 MD07G1118700.v1.1
prunus_persica	Prupe.2G141900_v2.0.a1 Prupe.2G141900_v2.0.a1 Prupe.2G141900_v2.0.a1 Prupe.2G141900_v2.0.a1 Prupe.2G141900_v2.0.a1
pyrus_communis	pycom02g16930 pycom07g10600
rosa_chinensis	RchiOBHm_Chr1g0349691
rosa_laevigata	RLG00000028535
rosa_roxburghii	Rroxscaffold_4G00305380
rosa_rugosa	Rorug01G0205000 Rorug01G0205100
rosa_samantha	Rh1AG222600 Rh1BG188700 Rh1CG207300 Rh1DG217800
rosa_wichuraiana	Rw1G018980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	406
AcsI	RAATTY	1 cut(s)	94
AfaI	GTAC	1 cut(s)	150
AfiI	CCNNNNNNNGG	1 cut(s)	231
AjuI	GAANNNNNNNTTGG	2 cut(s)	338, 370
AluBI	AGCT	3 cut(s)	37, 59, 126
AluI	AGCT	3 cut(s)	37, 59, 126
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	1 cut(s)	19
ApeKI	GCWGC	2 cut(s)	59, 100
ApoI	RAATTY	1 cut(s)	94
Asp700I	GAANNNNTTC	1 cut(s)	363
AspLEI	GCGC	1 cut(s)	407
AsuHPI	GGTGA	1 cut(s)	263
BanII	GRGCYC	1 cut(s)	39
BarI	GAAGNNNNNNTAC	2 cut(s)	205, 237
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	2 cut(s)	46, 112
BccI	CCATC	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	19
BfmI	CTRYAG	1 cut(s)	60
BisI	GCNGC	2 cut(s)	60, 101
BlsI	GCNGC	2 cut(s)	61, 102
BmsI	GCATC	1 cut(s)	328
BsaJI	CCNNGG	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse1I	ACTGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	1 cut(s)	367
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	33
BseXI	GCAGC	2 cut(s)	46, 112
BsiHKAI	GWGCWC	1 cut(s)	39
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	1 cut(s)	140
BspMAI	CTGCAG	1 cut(s)	64
BspQI	GCTCTTC	1 cut(s)	27
BsrI	ACTGG	1 cut(s)	33
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	1 cut(s)	140
BssT1I	CCWWGG	1 cut(s)	354
Bst4CI	ACNGT	3 cut(s)	84, 153, 411
Bst6I	CTCTTC	5 cut(s)	27, 66, 114, 159, 310
BstAPI	GCANNNNNTGC	1 cut(s)	413
BstDEI	CTNAG	1 cut(s)	417
BstF5I	GGATG	1 cut(s)	367
BstHHI	GCGC	1 cut(s)	407
BstKTI	GATC	1 cut(s)	143
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	140
BstMWI	GCNNNNNNNGC	1 cut(s)	413
BstSFI	CTRYAG	1 cut(s)	60
BstV1I	GCAGC	2 cut(s)	46, 112
BtsCI	GGATG	1 cut(s)	367
BtsI	GCAGTG	2 cut(s)	69, 315
BtsIMutI	CAGTG	3 cut(s)	69, 158, 315
CfoI	GCGC	1 cut(s)	407
Csp6I	GTAC	1 cut(s)	149
CviAII	CATG	2 cut(s)	343, 383
CviJI	RGCY	5 cut(s)	37, 59, 126, 183, 362
CviKI_1	RGCY	5 cut(s)	37, 59, 126, 183, 362
CviQI	GTAC	1 cut(s)	149
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	1 cut(s)	142
DpnII	GATC	1 cut(s)	140
Eam1104I	CTCTTC	5 cut(s)	27, 66, 114, 159, 310
EarI	CTCTTC	5 cut(s)	27, 66, 114, 159, 310
Ecl136II	GAGCTC	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	354
Eco24I	GRGCYC	1 cut(s)	39
Eco53kI	GAGCTC	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	37
EcoT14I	CCWWGG	1 cut(s)	354
EcoT38I	GRGCYC	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	2 cut(s)	346, 386
FaiI	YATR	7 cut(s)	238, 240, 278, 311, 344, 384, 414
FalI	AAGNNNNNCTT	2 cut(s)	24, 56
FatI	CATG	2 cut(s)	342, 382
Fnu4HI	GCNGC	2 cut(s)	60, 101
FokI	GGATG	1 cut(s)	354
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	2 cut(s)	60, 101
FspAI	RTGCGCAY	1 cut(s)	406
FspI	TGCGCA	1 cut(s)	406
GlaI	GCGC	1 cut(s)	406
GluI	GCNGC	2 cut(s)	60, 101
HhaI	GCGC	1 cut(s)	407
Hin1II	CATG	2 cut(s)	346, 386
Hin6I	GCGC	1 cut(s)	405
HinP1I	GCGC	1 cut(s)	405
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	1 cut(s)	315
Hpy188I	TCNGA	1 cut(s)	210
Hpy8I	GTNNAC	1 cut(s)	315
HpyAV	CCTTC	1 cut(s)	207
HpyCH4III	ACNGT	3 cut(s)	84, 153, 411
HpyCH4V	TGCA	4 cut(s)	4, 62, 100, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	413
HpyF3I	CTNAG	1 cut(s)	417
Hsp92II	CATG	2 cut(s)	346, 386
HspAI	GCGC	1 cut(s)	405
Kzo9I	GATC	1 cut(s)	140
LguI	GCTCTTC	1 cut(s)	27
LmnI	GCTCC	1 cut(s)	42
LpnPI	CCDG	3 cut(s)	14, 165, 178
Lsp1109I	GCAGC	2 cut(s)	46, 112
LweI	GCATC	1 cut(s)	328
MaeIII	GTNAC	1 cut(s)	64
MalI	GATC	1 cut(s)	142
MboI	GATC	1 cut(s)	140
MboII	GAAGA	6 cut(s)	44, 83, 88, 131, 176, 297
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	3 cut(s)	94, 288, 398
MnlI	CCTC	3 cut(s)	160, 266, 304
MroXI	GAANNNNTTC	1 cut(s)	363
MseI	TTAA	1 cut(s)	158
MspA1I	CMGCKG	1 cut(s)	59
MwoI	GCNNNNNNNGC	1 cut(s)	413
NdeII	GATC	1 cut(s)	140
NlaIII	CATG	2 cut(s)	346, 386
NmuCI	GTSAC	1 cut(s)	64
NsbI	TGCGCA	1 cut(s)	406
PciSI	GCTCTTC	1 cut(s)	27
PdmI	GAANNNNTTC	1 cut(s)	363
PkrI	GCNGC	2 cut(s)	61, 102
Psp124BI	GAGCTC	1 cut(s)	39
PstI	CTGCAG	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	59
RsaI	GTAC	1 cut(s)	150
RsaNI	GTAC	1 cut(s)	149
SacI	GAGCTC	1 cut(s)	39
SapI	GCTCTTC	1 cut(s)	27
SaqAI	TTAA	1 cut(s)	158
SatI	GCNGC	2 cut(s)	60, 101
Sau3AI	GATC	1 cut(s)	140
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	6 cut(s)	39, 61, 128, 277, 296, 356
SfaNI	GCATC	1 cut(s)	328
SfcI	CTRYAG	1 cut(s)	60
Sse9I	AATT	3 cut(s)	94, 288, 398
SstI	GAGCTC	1 cut(s)	39
StyI	CCWWGG	1 cut(s)	354
TaaI	ACNGT	3 cut(s)	84, 153, 411
TasI	AATT	3 cut(s)	94, 288, 398
TatI	WGTACW	1 cut(s)	148
Tru1I	TTAA	1 cut(s)	158
Tru9I	TTAA	1 cut(s)	158
TscAI	CASTG	3 cut(s)	69, 158, 322
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	2 cut(s)	59, 100
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	6 cut(s)	258, 356, 359, 399, 404, 408
TspRI	CASTG	3 cut(s)	69, 158, 322
XapI	RAATTY	1 cut(s)	94
XmnI	GAANNNNTTC	1 cut(s)	363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.