AT4G36100

vesicle docking involved in exocytosis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0007759
Physical Location & Seq
Forward (+)
17082509 .. 17083605
1097 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G36100.1

Sequence Viewer

Length: 711 bp
ATGGAAGAGTCTATCAATCAAAATCCTGAAGCTATGGAAGCACTTATCTCCAATCTCTTTGGAAACATCTCGTCCTTGAAATCTGCTTATATCGAGCTTCAAAGTGCTCATACTCCTTACGATCCCGAGAAGATTCAGGCAGCGGACAAAGTTGTCATTTCTGAACTCAAGAATCTTTCCGAAATGAAGCATTTTTACAGAGAGAATAACCCCAAGCCTGTATGTGTCTCTCCACAAGACTCTCGTTTAGCTGCAGAGATTCAAGAGCAGCAGAGTTTGTTGAAGACTTATGAGGTCATGGTGAAAAGGTCGCTAATGGAGCAATCTTTGGATGCATACGATGAGAAAGAGAAGGAGATGATGATGATGATAGGCAGCATCAACAGAACCGAGCTTCTATCTGTTTTGAAGGCGAAAGGTACTAATATAGACAAGTTACGGTTTGCAATCATGTACTTAATTTCCTTAGAAAGCGTTAACCAAACCGAAGTTGAAGCTGTGGAAGCAGCATTGCGTGAAGCTAAGATAGATACAAGCACGTTTCAGTATGTGAAAAAGATCAAATCGCTGAACGTTTCTTTAGCAGCAAACTCAGCCAGCAAAAGTCATATTGCTCTATGGCCAGTCTATAAACGTGGTGACCGCGCGGGAGTCAAGAATCTCTTATCCAGTGATGAGAAACTAGCGGTGGCAAGGGCTGTTGAGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0000149 GO:0000902 GO:0001666 GO:0003002 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005794 GO:0005798 GO:0005801 GO:0005829 GO:0005886 GO:0006810 GO:0006886 GO:0006887 GO:0006888 GO:0006890 GO:0006892 GO:0006900 GO:0006901 GO:0006903 GO:0006904 GO:0006906 GO:0006950 GO:0006996 GO:0007275 GO:0007389 GO:0007444 GO:0007447 GO:0007450 GO:0008104 GO:0008150 GO:0009628 GO:0009636 GO:0009653 GO:0009888 GO:0009892 GO:0009894 GO:0009895 GO:0009953 GO:0009966 GO:0009987 GO:0010506 GO:0010507 GO:0010638 GO:0010639 GO:0010646 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016241 GO:0016242 GO:0019222 GO:0019905 GO:0022406 GO:0022607 GO:0023051 GO:0030134 GO:0030135 GO:0031090 GO:0031323 GO:0031324 GO:0031329 GO:0031330 GO:0031334 GO:0031338 GO:0031340 GO:0031410 GO:0031982 GO:0031984 GO:0032386 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0032940 GO:0032989 GO:0033036 GO:0033043 GO:0034613 GO:0035220 GO:0035222 GO:0035295 GO:0035542 GO:0035543 GO:0036293 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044088 GO:0044089 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046578 GO:0046903 GO:0046907 GO:0047485 GO:0048190 GO:0048193 GO:0048194 GO:0048199 GO:0048207 GO:0048208 GO:0048278 GO:0048280 GO:0048284 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051056 GO:0051128 GO:0051129 GO:0051130 GO:0051179 GO:0051223 GO:0051234 GO:0051640 GO:0051641 GO:0051648 GO:0051649 GO:0051650 GO:0051656 GO:0060341 GO:0060429 GO:0060627 GO:0060628 GO:0061024 GO:0061025 GO:0065003 GO:0065007 GO:0070201 GO:0070482 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0090087 GO:0090114 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0140029 GO:0140056 GO:1901998 GO:1902115 GO:1902116 GO:1902531 GO:1902902 GO:2000785
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sec1

Protein Analysis

236

Amino Acids

26.51

Weight (kDa)

5.78

Isoelectric Point (pI)

45.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF641 PF04859 8 - 115 1.3e-37 Plant protein of unknown function (DUF641)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 152
AccII CGCG 2 cut(s) 645, 647
AciI CCGC 4 cut(s) 143, 643, 647, 686
AclI AACGTT 1 cut(s) 573
AclWI GGATC 1 cut(s) 116
AcoI YGGCCR 1 cut(s) 620
AcuI CTGAAG 1 cut(s) 48
AfaI GTAC 2 cut(s) 421, 455
AgsI TTSAA 6 cut(s) 79, 101, 263, 283, 409, 494
AluBI AGCT 6 cut(s) 32, 97, 251, 394, 497, 521
AluI AGCT 6 cut(s) 32, 97, 251, 394, 497, 521
Alw21I GWGCWC 1 cut(s) 109
Alw26I GTCTC 1 cut(s) 232
AlwI GGATC 1 cut(s) 116
Ama87I CYCGRG 1 cut(s) 125
AoxI GGCC 1 cut(s) 620
ApeKI GCWGC 6 cut(s) 140, 251, 268, 375, 506, 584
AspLEI GCGC 1 cut(s) 647
AsuHPI GGTGA 2 cut(s) 313, 650
AvaI CYCGRG 1 cut(s) 125
BalI TGGCCA 1 cut(s) 622
BarI GAAGNNNNNNTAC 2 cut(s) 179, 211
BbsI GAAGAC 1 cut(s) 290
Bbv12I GWGCWC 1 cut(s) 109
BbvI GCAGC 6 cut(s) 152, 238, 280, 387, 518, 596
BcoDI GTCTC 1 cut(s) 232
BfaI CTAG 1 cut(s) 683
BfmI CTRYAG 1 cut(s) 252
BisI GCNGC 6 cut(s) 141, 252, 269, 376, 507, 585
BlsI GCNGC 6 cut(s) 142, 253, 270, 377, 508, 586
BmeT110I CYCGRG 1 cut(s) 125
BmsI GCATC 2 cut(s) 322, 387
BpiI GAAGAC 1 cut(s) 290
BpuEI CTTGAG 1 cut(s) 152
Bse1I ACTGG 2 cut(s) 623, 669
Bse3DI GCAATG 1 cut(s) 509
BseGI GGATG 1 cut(s) 337
BseMI GCAATG 1 cut(s) 509
BseMII CTCAG 1 cut(s) 606
BseNI ACTGG 2 cut(s) 623, 669
BseXI GCAGC 6 cut(s) 152, 238, 280, 387, 518, 596
Bsh1236I CGCG 2 cut(s) 645, 647
BshFI GGCC 1 cut(s) 622
BsiHKAI GWGCWC 1 cut(s) 109
BsiHKCI CYCGRG 1 cut(s) 125
BsmAI GTCTC 1 cut(s) 232
BsnI GGCC 1 cut(s) 622
BsoBI CYCGRG 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 109
Bsp143I GATC 2 cut(s) 121, 558
BspACI CCGC 4 cut(s) 143, 643, 647, 686
BspANI GGCC 1 cut(s) 622
BspCNI CTCAG 1 cut(s) 605
BspFNI CGCG 2 cut(s) 645, 647
BspMAI CTGCAG 1 cut(s) 256
BspPI GGATC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 509
BsrI ACTGG 2 cut(s) 623, 669
BssMI GATC 2 cut(s) 121, 558
Bst4CI ACNGT 1 cut(s) 441
BstC8I GCNNGC 1 cut(s) 598
BstDEI CTNAG 3 cut(s) 466, 522, 592
BstEII GGTNACC 1 cut(s) 638
BstF5I GGATG 1 cut(s) 337
BstFNI CGCG 2 cut(s) 645, 647
BstHHI GCGC 1 cut(s) 647
BstKTI GATC 2 cut(s) 124, 561
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 2 cut(s) 121, 558
BstMWI GCNNNNNNNGC 4 cut(s) 38, 319, 503, 593
BstPI GGTNACC 1 cut(s) 638
BstSFI CTRYAG 1 cut(s) 252
BstUI CGCG 2 cut(s) 645, 647
BstV1I GCAGC 6 cut(s) 152, 238, 280, 387, 518, 596
BstV2I GAAGAC 1 cut(s) 290
BsuRI GGCC 1 cut(s) 622
BtsCI GGATG 1 cut(s) 337
BtsIMutI CAGTG 1 cut(s) 676
Cac8I GCNNGC 1 cut(s) 598
CfoI GCGC 1 cut(s) 647
Csp6I GTAC 2 cut(s) 420, 454
CviAII CATG 2 cut(s) 298, 451
CviQI GTAC 2 cut(s) 420, 454
DdeI CTNAG 3 cut(s) 466, 522, 592
DpnI GATC 2 cut(s) 123, 560
DpnII GATC 2 cut(s) 121, 558
DrdI GACNNNNNNGTC 1 cut(s) 152
DseDI GACNNNNNNGTC 1 cut(s) 152
EaeI YGGCCR 1 cut(s) 620
Eco57I CTGAAG 1 cut(s) 48
Eco88I CYCGRG 1 cut(s) 125
Eco91I GGTNACC 1 cut(s) 638
EcoO65I GGTNACC 1 cut(s) 638
EcoT22I ATGCAT 1 cut(s) 337
FaeI CATG 2 cut(s) 301, 454
FalI AAGNNNNNCTT 2 cut(s) 647, 679
FatI CATG 2 cut(s) 297, 450
FauI CCCGC 1 cut(s) 640
Fnu4HI GCNGC 6 cut(s) 141, 252, 269, 376, 507, 585
FokI GGATG 1 cut(s) 344
Fsp4HI GCNGC 6 cut(s) 141, 252, 269, 376, 507, 585
FspBI CTAG 1 cut(s) 683
GlaI GCGC 1 cut(s) 646
GluI GCNGC 6 cut(s) 141, 252, 269, 376, 507, 585
HaeIII GGCC 1 cut(s) 622
HhaI GCGC 1 cut(s) 647
Hin1II CATG 2 cut(s) 301, 454
Hin6I GCGC 1 cut(s) 645
HinP1I GCGC 1 cut(s) 645
HincII GTYRAC 1 cut(s) 478
HindII GTYRAC 1 cut(s) 478
HinfI GANTC 7 cut(s) 8, 133, 172, 239, 259, 651, 658
HpaI GTTAAC 1 cut(s) 478
HphI GGTGA 2 cut(s) 313, 650
Hpy166II GTNNAC 1 cut(s) 478
Hpy188I TCNGA 2 cut(s) 163, 181
Hpy188III TCNNGA 5 cut(s) 26, 125, 169, 263, 655
Hpy8I GTNNAC 1 cut(s) 478
HpyAV CCTTC 2 cut(s) 346, 403
HpyCH4III ACNGT 1 cut(s) 441
HpyCH4IV ACGT 3 cut(s) 539, 573, 634
HpyCH4V TGCA 3 cut(s) 254, 335, 446
HpyF10VI GCNNNNNNNGC 4 cut(s) 38, 319, 503, 593
HpyF3I CTNAG 3 cut(s) 466, 522, 592
HpySE526I ACGT 3 cut(s) 539, 573, 634
Hsp92II CATG 2 cut(s) 301, 454
HspAI GCGC 1 cut(s) 645
KspAI GTTAAC 1 cut(s) 478
Kzo9I GATC 2 cut(s) 121, 558
LmnI GCTCC 1 cut(s) 319
LpnPI CCDG 6 cut(s) 39, 122, 231, 610, 636, 682
Lsp1109I GCAGC 6 cut(s) 152, 238, 280, 387, 518, 596
LweI GCATC 2 cut(s) 322, 387
MaeI CTAG 1 cut(s) 683
MaeII ACGT 3 cut(s) 539, 573, 634
MaeIII GTNAC 2 cut(s) 435, 638
MalI GATC 2 cut(s) 123, 560
MboI GATC 2 cut(s) 121, 558
MboII GAAGA 3 cut(s) 17, 142, 295
MhlI GDGCHC 1 cut(s) 109
MlsI TGGCCA 1 cut(s) 622
MluCI AATT 1 cut(s) 459
MluNI TGGCCA 1 cut(s) 622
MlyI GAGTC 3 cut(s) 17, 233, 660
MnlI CCTC 1 cut(s) 286
Mox20I TGGCCA 1 cut(s) 622
Mph1103I ATGCAT 1 cut(s) 337
MscI TGGCCA 1 cut(s) 622
MseI TTAA 2 cut(s) 458, 477
Msp20I TGGCCA 1 cut(s) 622
MspA1I CMGCKG 1 cut(s) 143
MvnI CGCG 2 cut(s) 645, 647
MwoI GCNNNNNNNGC 4 cut(s) 38, 319, 503, 593
NdeII GATC 2 cut(s) 121, 558
NlaIII CATG 2 cut(s) 301, 454
NmuCI GTSAC 1 cut(s) 638
NsiI ATGCAT 1 cut(s) 337
PfeI GAWTC 4 cut(s) 133, 172, 259, 658
PkrI GCNGC 6 cut(s) 142, 253, 270, 377, 508, 586
PleI GAGTC 3 cut(s) 16, 233, 659
PpsI GAGTC 3 cut(s) 16, 233, 659
Psp1406I AACGTT 1 cut(s) 573
PspEI GGTNACC 1 cut(s) 638
PstI CTGCAG 1 cut(s) 256
RsaI GTAC 2 cut(s) 421, 455
RsaNI GTAC 2 cut(s) 420, 454
SaqAI TTAA 2 cut(s) 458, 477
SatI GCNGC 6 cut(s) 141, 252, 269, 376, 507, 585
Sau3AI GATC 2 cut(s) 121, 558
SchI GAGTC 3 cut(s) 17, 233, 660
SduI GDGCHC 1 cut(s) 109
SfaNI GCATC 2 cut(s) 322, 387
SfcI CTRYAG 1 cut(s) 252
SmlI CTYRAG 1 cut(s) 167
SmoI CTYRAG 1 cut(s) 167
Sse9I AATT 1 cut(s) 459
SsiI CCGC 4 cut(s) 143, 643, 647, 686
SspMI CTAG 1 cut(s) 683
TaaI ACNGT 1 cut(s) 441
TaiI ACGT 3 cut(s) 542, 576, 637
TaqI TCGA 1 cut(s) 93
TasI AATT 1 cut(s) 459
TatI WGTACW 1 cut(s) 453
TfiI GAWTC 4 cut(s) 133, 172, 259, 658
Tru1I TTAA 2 cut(s) 458, 477
Tru9I TTAA 2 cut(s) 458, 477
TscAI CASTG 1 cut(s) 676
TseFI GTSAC 1 cut(s) 638
TseI GCWGC 6 cut(s) 140, 251, 268, 375, 506, 584
Tsp45I GTSAC 1 cut(s) 638
TspDTI ATGAA 1 cut(s) 200
TspRI CASTG 1 cut(s) 676
XspI CTAG 1 cut(s) 683
Zsp2I ATGCAT 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.