Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0007759

Physical Location & Seq

Genomic Coordinates Reverse (-)

30351112 .. 30352380

Gene Structure 1269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG188700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGCTACCCACTGGAGCGCGAGATACACAACTCCGTGAGAGCAATAGCCAGAAGGTTCACCCACAACCGATGGAAGAGTCAATGAATCAGAATCCAGAAGCTGTGGAAGCCCTGATATCTAAGGTTTTTACAAACATCTCGTCCCTGAAATCAGCTTACATCCAGCTCCAAGCTGCTCATACTCCCTATGACCCTGACAAAATTCAAGCTGCTGATAAACTTGTTATTTCTGAGCTGAAAAACCTCTCTGAACTTAAGCACTTCTACAGGGAGAACAATCCCAGCCCAGTATGTGTTTCTCCACAGGATTCCCGCTTAGCGGCAGAAATACAAGAACAACAAATTCTGCTGAAAACCTATGGGGTTATGGTTAAAAAGTTCCAGTCTGAGATCCAGAATAAAGATTCTGAAATCATGCAGCTTCAGCAGCATATTGAGGAGGCAAAACGGAAGCAAGCTAAGTTGGAAAAGAACCTAAAGCTTAGGGGCTTGTCTACAAAAGAATCAGAAGCTTCTGCCGGTGAAAATGGATTTTCTCCTGTGGATTTAACCCCTGATCTCTTCACATCGGTTGTTGAAGCTGCATATAAAGCTATTCATGACTTTGCCAAACCATTGATCAACATGATGAAAGCGGCTGGGTGGGACCTTGATGCAGCTGCTAACTCAATTGAACCGACCGTTGTTTATGCAAAGAGACCTCACAAGAAGTATGCATTTGAGTCTCATATATGCCAAAGAATGTTCAGTGGCTTCCAGCAGGAAAGCTTCTCCATCAAATCAGACAATCTAACAATAAATAAGGAGAGCTTCTTCCACCAATTTCTCACTCTGCGGGACATGGATCCATTGGACATGCTTGGCCAAACTCCAGATTCTATGTTTGGGAGATTTTGCAGGAGCAAGTACCTAGTAGTGGTTCACCCGAAAATGGAGACTTCATTTTTTGGGAATTTAGATCAACGGAATTATATAATGGGTGGCGGTCATCCAAGGACTCCGTTTTACCAGGCTTTCTTAAAACTGGCCAAGTCAATATGGCTTTTGCACAGGTTGGCCTTTTCGTTTGATCCTCATGTTGAGATCTTCCAGGTTAAGAGGGGGAGTGAGTTTTCAGAGGTTTACATGGAAAGTGTGGTTAAGAATTTGATAATGGATGAAGGTGATCAAAAGCCTAAGGTTGGTCTCATGGTGATGCCTGGTTTTTGGGTTGGAGGCAGTGTGATTCAAAGTCAAGTTTATCTCTCTGGTATGAAGGTTGCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF641

Protein Analysis

422

Amino Acids

47.89

Weight (kDa)

6.88

Isoelectric Point (pI)

46.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF641	PF04859	31 - 157	2e-45	Plant protein of unknown function (DUF641)
GIL1_IRKI_C	PF24994	362 - 414	6.4e-19	GIL1/IRKI C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007759)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45260 AT4G33320 AT4G34080 AT4G36100
fragaria_vesca	FvH4_7g11400
malus_domestica	MD02G1206300.v1.1 MD07G1118700.v1.1
prunus_persica	Prupe.2G141900_v2.0.a1 Prupe.2G141900_v2.0.a1 Prupe.2G141900_v2.0.a1 Prupe.2G141900_v2.0.a1 Prupe.2G141900_v2.0.a1
pyrus_communis	pycom02g16930 pycom07g10600
rosa_chinensis	RchiOBHm_Chr1g0349691
rosa_laevigata	RLG00000028535
rosa_roxburghii	Rroxscaffold_4G00305380
rosa_rugosa	Rorug01G0205000 Rorug01G0205100
rosa_samantha	Rh1AG222600 Rh1BG188700 Rh1CG207300 Rh1DG217800
rosa_wichuraiana	Rw1G018980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	494
AccII	CGCG	1 cut(s)	19
AciI	CCGC	5 cut(s)	313, 320, 635, 835, 984
AclWI	GGATC	4 cut(s)	385, 839, 852, 1064
AcoI	YGGCCR	2 cut(s)	862, 1026
AcsI	RAATTY	4 cut(s)	201, 342, 952, 1144
AcuI	CTGAAG	1 cut(s)	407
AfaI	GTAC	1 cut(s)	908
AfiI	CCNNNNNNNGG	4 cut(s)	319, 916, 931, 1181
AflII	CTTAAG	1 cut(s)	254
AgsI	TTSAA	4 cut(s)	206, 578, 674, 1229
AjnI	CCWGG	3 cut(s)	1008, 1089, 1198
Alw26I	GTCTC	4 cut(s)	691, 729, 929, 1190
AlwI	GGATC	4 cut(s)	385, 839, 852, 1064
AlwNI	CAGNNNCTG	1 cut(s)	101
AoxI	GGCC	3 cut(s)	862, 1026, 1056
ApeKI	GCWGC	7 cut(s)	173, 209, 418, 427, 581, 656, 659
ApoI	RAATTY	4 cut(s)	201, 342, 952, 1144
ArsI	GACNNNNNNTTYG	2 cut(s)	125, 157
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	1 cut(s)	646
AsuHPI	GGTGA	5 cut(s)	50, 533, 914, 1175, 1204
AvaII	GGWCC	1 cut(s)	646
AxyI	CCTNAGG	1 cut(s)	1176
BalI	TGGCCA	2 cut(s)	864, 1028
BamHI	GGATCC	1 cut(s)	844
BbvI	GCAGC	7 cut(s)	160, 196, 430, 439, 568, 646, 668
BccI	CCATC	2 cut(s)	64, 782
BciT130I	CCWGG	3 cut(s)	1010, 1091, 1200
BclI	TGATCA	2 cut(s)	618, 1165
BcoDI	GTCTC	4 cut(s)	691, 729, 929, 1190
BfaI	CTAG	1 cut(s)	911
BfmI	CTRYAG	1 cut(s)	265
BfrI	CTTAAG	1 cut(s)	254
BglII	AGATCT	1 cut(s)	1083
BisI	GCNGC	9 cut(s)	174, 210, 321, 419, 428, 582, 636, 657, 660
BlpI	GCTNAGC	1 cut(s)	316
BlsI	GCNGC	9 cut(s)	175, 211, 322, 420, 429, 583, 637, 658, 661
Bme1390I	CCNGG	3 cut(s)	1010, 1091, 1200
Bme18I	GGWCC	1 cut(s)	646
BmgT120I	GGNCC	1 cut(s)	646
BmiI	GGNNCC	2 cut(s)	647, 846
BmrFI	CCNGG	3 cut(s)	1010, 1091, 1200
BmrI	ACTGGG	1 cut(s)	281
BmsI	GCATC	2 cut(s)	643, 1185
BmuI	ACTGGG	1 cut(s)	281
BpmI	CTGGAG	2 cut(s)	33, 855
Bpu10I	CCTNAGC	1 cut(s)	482
Bpu1102I	GCTNAGC	1 cut(s)	316
BsaI	GGTCTC	2 cut(s)	691, 1190
BsaJI	CCNNGG	1 cut(s)	992
BsaXI	ACNNNNNCTCC	2 cut(s)	1206, 1236
Bsc4I	CCNNNNNNNGG	4 cut(s)	319, 916, 931, 1181
Bse118I	RCCGGY	1 cut(s)	518
Bse1I	ACTGG	4 cut(s)	16, 287, 382, 1029
Bse21I	CCTNAGG	1 cut(s)	1176
BseBI	CCWGG	3 cut(s)	1010, 1091, 1200
BseDI	CCNNGG	1 cut(s)	992
BseGI	GGATG	3 cut(s)	159, 988, 1162
BseLI	CCNNNNNNNGG	4 cut(s)	319, 916, 931, 1181
BseMII	CTCAG	2 cut(s)	222, 378
BseNI	ACTGG	4 cut(s)	16, 287, 382, 1029
BseRI	GAGGAG	1 cut(s)	452
BseXI	GCAGC	7 cut(s)	160, 196, 430, 439, 568, 646, 668
BseYI	CCCAGC	2 cut(s)	281, 638
Bsh1236I	CGCG	1 cut(s)	19
Bsh1285I	CGRYCG	1 cut(s)	681
BshFI	GGCC	3 cut(s)	864, 1028, 1058
BsiEI	CGRYCG	1 cut(s)	681
BsiSI	CCGG	1 cut(s)	519
BslFI	GGGAC	3 cut(s)	127, 659, 851
BslI	CCNNNNNNNGG	4 cut(s)	319, 916, 931, 1181
BsmAI	GTCTC	4 cut(s)	691, 729, 929, 1190
BsmFI	GGGAC	3 cut(s)	127, 659, 851
BsnI	GGCC	3 cut(s)	864, 1028, 1058
Bso31I	GGTCTC	2 cut(s)	691, 1190
Bsp143I	GATC	8 cut(s)	390, 556, 618, 844, 958, 1069, 1083, 1165
Bsp1720I	GCTNAGC	1 cut(s)	316
BspACI	CCGC	5 cut(s)	313, 320, 635, 835, 984
BspANI	GGCC	3 cut(s)	864, 1028, 1058
BspCNI	CTCAG	2 cut(s)	223, 379
BspFNI	CGCG	1 cut(s)	19
BspHI	TCATGA	1 cut(s)	598
BspLI	GGNNCC	2 cut(s)	647, 846
BspPI	GGATC	4 cut(s)	385, 839, 852, 1064
BspTI	CTTAAG	1 cut(s)	254
BspTNI	GGTCTC	2 cut(s)	691, 1190
BsrFI	RCCGGY	1 cut(s)	518
BsrI	ACTGG	4 cut(s)	16, 287, 382, 1029
BssAI	RCCGGY	1 cut(s)	518
BssECI	CCNNGG	1 cut(s)	992
BssMI	GATC	8 cut(s)	390, 556, 618, 844, 958, 1069, 1083, 1165
BssT1I	CCWWGG	1 cut(s)	992
Bst2UI	CCWGG	3 cut(s)	1010, 1091, 1200
Bst4CI	ACNGT	1 cut(s)	682
Bst6I	CTCTTC	2 cut(s)	69, 566
BstAFI	CTTAAG	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	456
BstDEI	CTNAG	7 cut(s)	120, 231, 316, 387, 459, 482, 1176
BstF5I	GGATG	3 cut(s)	159, 988, 1162
BstFNI	CGCG	1 cut(s)	19
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	8 cut(s)	393, 559, 621, 847, 961, 1072, 1086, 1168
BstMAI	GTCTC	4 cut(s)	691, 729, 929, 1190
BstMBI	GATC	8 cut(s)	390, 556, 618, 844, 958, 1069, 1083, 1165
BstMCI	CGRYCG	1 cut(s)	681
BstMWI	GCNNNNNNNGC	4 cut(s)	107, 424, 427, 590
BstNI	CCWGG	3 cut(s)	1010, 1091, 1200
BstNSI	RCATGY	1 cut(s)	859
BstSCI	CCNGG	3 cut(s)	1008, 1089, 1198
BstSFI	CTRYAG	1 cut(s)	265
BstUI	CGCG	1 cut(s)	19
BstV1I	GCAGC	7 cut(s)	160, 196, 430, 439, 568, 646, 668
BstX2I	RGATCY	3 cut(s)	390, 844, 1083
BstYI	RGATCY	3 cut(s)	390, 844, 1083
Bsu36I	CCTNAGG	1 cut(s)	1176
BsuRI	GGCC	3 cut(s)	864, 1028, 1058
BtsCI	GGATG	3 cut(s)	159, 988, 1162
BtsI	GCAGTG	1 cut(s)	1225
BtsIMutI	CAGTG	3 cut(s)	9, 754, 1225
Cac8I	GCNNGC	1 cut(s)	456
CaiI	CAGNNNCTG	1 cut(s)	101
CciI	TCATGA	1 cut(s)	598
CfoI	GCGC	1 cut(s)	19
Cfr10I	RCCGGY	1 cut(s)	518
Cfr13I	GGNCC	1 cut(s)	646
Csp6I	GTAC	1 cut(s)	907
CviAII	CATG	8 cut(s)	415, 599, 625, 841, 856, 1076, 1126, 1189
CviQI	GTAC	1 cut(s)	907
DdeI	CTNAG	7 cut(s)	120, 231, 316, 387, 459, 482, 1176
DpnI	GATC	8 cut(s)	392, 558, 620, 846, 960, 1071, 1085, 1167
DpnII	GATC	8 cut(s)	390, 556, 618, 844, 958, 1069, 1083, 1165
EaeI	YGGCCR	2 cut(s)	862, 1026
Eam1104I	CTCTTC	2 cut(s)	69, 566
EarI	CTCTTC	2 cut(s)	69, 566
Eco130I	CCWWGG	1 cut(s)	992
Eco31I	GGTCTC	2 cut(s)	691, 1190
Eco32I	GATATC	1 cut(s)	117
Eco47I	GGWCC	1 cut(s)	646
Eco57I	CTGAAG	1 cut(s)	407
Eco81I	CCTNAGG	1 cut(s)	1176
EcoO109I	RGGNCCY	1 cut(s)	646
EcoRII	CCWGG	3 cut(s)	1008, 1089, 1198
EcoRV	GATATC	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	992
EcoT22I	ATGCAT	1 cut(s)	718
ErhI	CCWWGG	1 cut(s)	992
FaeI	CATG	8 cut(s)	418, 602, 628, 844, 859, 1079, 1129, 1192
FalI	AAGNNNNNCTT	2 cut(s)	794, 826
FaqI	GGGAC	3 cut(s)	127, 659, 851
FatI	CATG	8 cut(s)	414, 598, 624, 840, 855, 1075, 1125, 1188
FauI	CCCGC	2 cut(s)	320, 828
FbaI	TGATCA	2 cut(s)	618, 1165
FblI	GTMKAC	1 cut(s)	494
Fnu4HI	GCNGC	9 cut(s)	174, 210, 321, 419, 428, 582, 636, 657, 660
FokI	GGATG	3 cut(s)	146, 975, 1169
Fsp4HI	GCNGC	9 cut(s)	174, 210, 321, 419, 428, 582, 636, 657, 660
FspBI	CTAG	1 cut(s)	911
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	9 cut(s)	174, 210, 321, 419, 428, 582, 636, 657, 660
GsaI	CCCAGC	2 cut(s)	285, 642
GsuI	CTGGAG	2 cut(s)	33, 855
HaeIII	GGCC	3 cut(s)	864, 1028, 1058
HapII	CCGG	1 cut(s)	519
HhaI	GCGC	1 cut(s)	19
Hin1II	CATG	8 cut(s)	418, 602, 628, 844, 859, 1079, 1129, 1192
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HindIII	AAGCTT	3 cut(s)	479, 510, 766
HpaII	CCGG	1 cut(s)	519
HphI	GGTGA	5 cut(s)	50, 533, 914, 1175, 1204
Hpy166II	GTNNAC	4 cut(s)	58, 495, 922, 1123
Hpy188I	TCNGA	8 cut(s)	90, 232, 250, 388, 409, 508, 784, 1117
Hpy188III	TCNNGA	4 cut(s)	95, 394, 599, 872
Hpy8I	GTNNAC	4 cut(s)	58, 495, 922, 1123
HpyAV	CCTTC	3 cut(s)	46, 1154, 1249
HpyCH4III	ACNGT	1 cut(s)	682
HpyCH4V	TGCA	7 cut(s)	418, 584, 656, 692, 716, 897, 1048
HpyF10VI	GCNNNNNNNGC	4 cut(s)	107, 424, 427, 590
HpyF3I	CTNAG	7 cut(s)	120, 231, 316, 387, 459, 482, 1176
Hsp92II	CATG	8 cut(s)	418, 602, 628, 844, 859, 1079, 1129, 1192
HspAI	GCGC	1 cut(s)	17
Ksp22I	TGATCA	2 cut(s)	618, 1165
Kzo9I	GATC	8 cut(s)	390, 556, 618, 844, 958, 1069, 1083, 1165
LmnI	GCTCC	3 cut(s)	14, 171, 900
Lsp1109I	GCAGC	7 cut(s)	160, 196, 430, 439, 568, 646, 668
LweI	GCATC	2 cut(s)	643, 1185
MaeI	CTAG	1 cut(s)	911
MalI	GATC	8 cut(s)	392, 558, 620, 846, 960, 1071, 1085, 1167
MboI	GATC	8 cut(s)	390, 556, 618, 844, 958, 1069, 1083, 1165
MboII	GAAGA	4 cut(s)	86, 553, 805, 1078
MfeI	CAATTG	1 cut(s)	669
MflI	RGATCY	3 cut(s)	390, 844, 1083
MlsI	TGGCCA	2 cut(s)	864, 1028
MluCI	AATT	7 cut(s)	201, 342, 669, 821, 952, 967, 1144
MluNI	TGGCCA	2 cut(s)	864, 1028
MlyI	GAGTC	3 cut(s)	86, 731, 991
MmeI	TCCRAC	2 cut(s)	444, 1192
MnlI	CCTC	8 cut(s)	254, 430, 433, 711, 1083, 1092, 1111, 1208
Mox20I	TGGCCA	2 cut(s)	864, 1028
Mph1103I	ATGCAT	1 cut(s)	718
MscI	TGGCCA	2 cut(s)	864, 1028
MseI	TTAA	6 cut(s)	255, 372, 548, 1019, 1095, 1140
MslI	CAYNNNNRTG	1 cut(s)	1193
Msp20I	TGGCCA	2 cut(s)	864, 1028
MspA1I	CMGCKG	1 cut(s)	659
MspCI	CTTAAG	1 cut(s)	254
MspI	CCGG	1 cut(s)	519
MspR9I	CCNGG	3 cut(s)	1010, 1091, 1200
MunI	CAATTG	1 cut(s)	669
MvaI	CCWGG	3 cut(s)	1010, 1091, 1200
MvnI	CGCG	1 cut(s)	19
MwoI	GCNNNNNNNGC	4 cut(s)	107, 424, 427, 590
NdeII	GATC	8 cut(s)	390, 556, 618, 844, 958, 1069, 1083, 1165
NlaIII	CATG	8 cut(s)	418, 602, 628, 844, 859, 1079, 1129, 1192
NlaIV	GGNNCC	2 cut(s)	647, 846
NsiI	ATGCAT	1 cut(s)	718
NspI	RCATGY	1 cut(s)	859
PagI	TCATGA	1 cut(s)	598
PfeI	GAWTC	7 cut(s)	85, 91, 308, 404, 503, 875, 1225
PkrI	GCNGC	9 cut(s)	175, 211, 322, 420, 429, 583, 637, 658, 661
PleI	GAGTC	3 cut(s)	85, 730, 991
PpsI	GAGTC	3 cut(s)	85, 730, 991
PpuMI	RGGWCCY	1 cut(s)	646
Psp5II	RGGWCCY	1 cut(s)	646
Psp6I	CCWGG	3 cut(s)	1008, 1089, 1198
PspFI	CCCAGC	2 cut(s)	281, 638
PspGI	CCWGG	3 cut(s)	1008, 1089, 1198
PspN4I	GGNNCC	2 cut(s)	647, 846
PspPI	GGNCC	1 cut(s)	646
PspPPI	RGGWCCY	1 cut(s)	646
PstNI	CAGNNNCTG	1 cut(s)	101
PsuI	RGATCY	3 cut(s)	390, 844, 1083
PvuII	CAGCTG	1 cut(s)	659
RsaI	GTAC	1 cut(s)	908
RsaNI	GTAC	1 cut(s)	907
RseI	CAYNNNNRTG	1 cut(s)	1193
SaqAI	TTAA	6 cut(s)	255, 372, 548, 1019, 1095, 1140
SatI	GCNGC	9 cut(s)	174, 210, 321, 419, 428, 582, 636, 657, 660
Sau3AI	GATC	8 cut(s)	390, 556, 618, 844, 958, 1069, 1083, 1165
Sau96I	GGNCC	1 cut(s)	646
SchI	GAGTC	3 cut(s)	86, 731, 991
ScrFI	CCNGG	3 cut(s)	1010, 1091, 1200
SfaNI	GCATC	2 cut(s)	643, 1185
SfcI	CTRYAG	1 cut(s)	265
SinI	GGWCC	1 cut(s)	646
SmiMI	CAYNNNNRTG	1 cut(s)	1193
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	7 cut(s)	201, 342, 669, 821, 952, 967, 1144
SsiI	CCGC	5 cut(s)	313, 320, 635, 835, 984
SspMI	CTAG	1 cut(s)	911
StyD4I	CCNGG	3 cut(s)	1008, 1089, 1198
StyI	CCWWGG	1 cut(s)	992
TaaI	ACNGT	1 cut(s)	682
TasI	AATT	7 cut(s)	201, 342, 669, 821, 952, 967, 1144
TauI	GCSGC	2 cut(s)	323, 638
TfiI	GAWTC	7 cut(s)	85, 91, 308, 404, 503, 875, 1225
Tru1I	TTAA	6 cut(s)	255, 372, 548, 1019, 1095, 1140
Tru9I	TTAA	6 cut(s)	255, 372, 548, 1019, 1095, 1140
TscAI	CASTG	3 cut(s)	16, 754, 1225
TseI	GCWGC	7 cut(s)	173, 209, 418, 427, 581, 656, 659
TspDTI	ATGAA	6 cut(s)	98, 587, 644, 930, 1173, 1268
TspGWI	ACGGA	4 cut(s)	23, 463, 979, 990
TspRI	CASTG	3 cut(s)	16, 754, 1225
Vha464I	CTTAAG	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	646
XapI	RAATTY	4 cut(s)	201, 342, 952, 1144
XceI	RCATGY	1 cut(s)	859
XmiI	GTMKAC	1 cut(s)	494
XspI	CTAG	1 cut(s)	911
Zsp2I	ATGCAT	1 cut(s)	718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.