Rw1G018980

Plant protein of unknown function (DUF641)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0007759
Physical Location & Seq
Reverse (-)
41548382 .. 41552149
3768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G018980.1

Sequence Viewer

Length: 912 bp
ATGCTACCCACTGGAGCACGAGATACACAACTCCGTGAGAGCAATAGCCAGAAGGTTCACCCACAACCGATGGAAGAGTCAATGAATCAGAATCCAGAAGCAGTGGAAGCCCTGATATCTAAGGTTTTTACAAACATCTCGTCCCTGAAATCAGCTTACATCCAGCTCCAAGCTGCTCATACTCCCTATGACCCTGACAAAATTCAAGCTGCTGATAAACTTGTTATTTCTGAGCTGAAAAACCTGTCTGAACTTAAGCACTTCTACAGGGAGAACAATCCCAGCCCAGTATGTGTTTCTCCACAGGATTCCCGCTTAGCTGCAGAAATACAAGAACAACAAATTCTGCTGAAAACCTATGGGGTTATGGTTAAAAAGTTCCAGTCTGAGATCCAGAATAAAGATTCTGAAATCATGCAGCTTCAGCAGCATATTGAGGAGGCAAAACAGAAGCAAGCTAAGTTGGAAAAGAACCTAAAGCTTAGGGGCTTGTCTACAAAAGAATCAGAAGCTTCTGCCGGTGAAAATGGATTTTCTCCTGTGGATTTAACCCCTGATCTCTTCACATCGGTTGTTGAAGCTGCATATAAAGCTATTCATGACTTTGCCAAACCATTGATCAACATGATGAAAGCAGCTGGGTGGGACCTTGATGCAGCTGCTAACTCAATTGAACCGACCGTTGTTTATGCAAAGAGACCTCACAAGAAGTATGCATTTGAGTCTCATATATGCCAAAGAATGTTCAGTGGCTTCCAGCAGGAAAGCTTCTCCATCAAATCAGACAATCTAACAATAAATAAGGAGAGCTTCTTCCACCAATTTCTCACTCTGCGGGACATGGATCCATTGGACATGCTTGGCCAAACTCCAGATTCTATTTTGGGAGATTTTGCAGGAGCAAGTACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF641

Protein Analysis

303

Amino Acids

34.01

Weight (kDa)

5.67

Isoelectric Point (pI)

49.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF641 PF04859 31 - 157 1.7e-45 Plant protein of unknown function (DUF641)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 494
AciI CCGC 2 cut(s) 313, 835
AclWI GGATC 3 cut(s) 385, 839, 852
AcoI YGGCCR 1 cut(s) 862
AcsI RAATTY 2 cut(s) 201, 342
AcuI CTGAAG 1 cut(s) 407
AfaI GTAC 1 cut(s) 907
AflII CTTAAG 1 cut(s) 254
AgsI TTSAA 3 cut(s) 206, 578, 674
Alw21I GWGCWC 1 cut(s) 19
Alw26I GTCTC 2 cut(s) 691, 729
AlwI GGATC 3 cut(s) 385, 839, 852
AoxI GGCC 1 cut(s) 862
ApeKI GCWGC 9 cut(s) 173, 209, 320, 418, 427, 581, 635, 656, 659
ApoI RAATTY 2 cut(s) 201, 342
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AspS9I GGNCC 1 cut(s) 646
AsuHPI GGTGA 2 cut(s) 50, 533
AvaII GGWCC 1 cut(s) 646
BalI TGGCCA 1 cut(s) 864
BamHI GGATCC 1 cut(s) 844
BauI CACGAG 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 9 cut(s) 160, 196, 307, 430, 439, 568, 646, 647, 668
BccI CCATC 2 cut(s) 64, 782
BclI TGATCA 1 cut(s) 618
BcoDI GTCTC 2 cut(s) 691, 729
BfaI CTAG 1 cut(s) 910
BfmI CTRYAG 2 cut(s) 265, 321
BfrI CTTAAG 1 cut(s) 254
BisI GCNGC 9 cut(s) 174, 210, 321, 419, 428, 582, 636, 657, 660
BlpI GCTNAGC 1 cut(s) 316
BlsI GCNGC 9 cut(s) 175, 211, 322, 420, 429, 583, 637, 658, 661
Bme18I GGWCC 1 cut(s) 646
BmgT120I GGNCC 1 cut(s) 646
BmiI GGNNCC 2 cut(s) 647, 846
BmrI ACTGGG 1 cut(s) 281
BmsI GCATC 1 cut(s) 643
BmuI ACTGGG 1 cut(s) 281
BpmI CTGGAG 2 cut(s) 33, 855
Bpu10I CCTNAGC 1 cut(s) 482
Bpu1102I GCTNAGC 1 cut(s) 316
BsaI GGTCTC 1 cut(s) 691
Bse118I RCCGGY 1 cut(s) 518
Bse1I ACTGG 3 cut(s) 16, 287, 382
BseGI GGATG 1 cut(s) 159
BseMII CTCAG 2 cut(s) 222, 378
BseNI ACTGG 3 cut(s) 16, 287, 382
BseRI GAGGAG 1 cut(s) 452
BseXI GCAGC 9 cut(s) 160, 196, 307, 430, 439, 568, 646, 647, 668
BseYI CCCAGC 2 cut(s) 281, 638
Bsh1285I CGRYCG 1 cut(s) 681
BshFI GGCC 1 cut(s) 864
BsiEI CGRYCG 1 cut(s) 681
BsiHKAI GWGCWC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 519
BslFI GGGAC 3 cut(s) 127, 659, 851
BsmAI GTCTC 2 cut(s) 691, 729
BsmFI GGGAC 3 cut(s) 127, 659, 851
BsnI GGCC 1 cut(s) 864
Bso31I GGTCTC 1 cut(s) 691
Bsp1286I GDGCHC 1 cut(s) 19
Bsp143I GATC 4 cut(s) 390, 556, 618, 844
Bsp1720I GCTNAGC 1 cut(s) 316
BspACI CCGC 2 cut(s) 313, 835
BspANI GGCC 1 cut(s) 864
BspCNI CTCAG 2 cut(s) 223, 379
BspHI TCATGA 1 cut(s) 598
BspLI GGNNCC 2 cut(s) 647, 846
BspMAI CTGCAG 1 cut(s) 325
BspPI GGATC 3 cut(s) 385, 839, 852
BspTI CTTAAG 1 cut(s) 254
BspTNI GGTCTC 1 cut(s) 691
BsrFI RCCGGY 1 cut(s) 518
BsrI ACTGG 3 cut(s) 16, 287, 382
BssAI RCCGGY 1 cut(s) 518
BssMI GATC 4 cut(s) 390, 556, 618, 844
BssSI CACGAG 1 cut(s) 18
Bst2BI CACGAG 1 cut(s) 18
Bst4CI ACNGT 1 cut(s) 682
Bst6I CTCTTC 2 cut(s) 69, 566
BstAFI CTTAAG 1 cut(s) 254
BstC8I GCNNGC 1 cut(s) 456
BstDEI CTNAG 6 cut(s) 120, 231, 316, 387, 459, 482
BstF5I GGATG 1 cut(s) 159
BstKTI GATC 4 cut(s) 393, 559, 621, 847
BstMAI GTCTC 2 cut(s) 691, 729
BstMBI GATC 4 cut(s) 390, 556, 618, 844
BstMCI CGRYCG 1 cut(s) 681
BstMWI GCNNNNNNNGC 4 cut(s) 107, 424, 427, 590
BstNSI RCATGY 1 cut(s) 859
BstSFI CTRYAG 2 cut(s) 265, 321
BstV1I GCAGC 9 cut(s) 160, 196, 307, 430, 439, 568, 646, 647, 668
BstX2I RGATCY 2 cut(s) 390, 844
BstYI RGATCY 2 cut(s) 390, 844
BsuRI GGCC 1 cut(s) 864
BtsCI GGATG 1 cut(s) 159
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 3 cut(s) 9, 108, 754
Cac8I GCNNGC 1 cut(s) 456
CciI TCATGA 1 cut(s) 598
Cfr10I RCCGGY 1 cut(s) 518
Cfr13I GGNCC 1 cut(s) 646
Csp6I GTAC 1 cut(s) 906
CviAII CATG 5 cut(s) 415, 599, 625, 841, 856
CviQI GTAC 1 cut(s) 906
DdeI CTNAG 6 cut(s) 120, 231, 316, 387, 459, 482
DpnI GATC 4 cut(s) 392, 558, 620, 846
DpnII GATC 4 cut(s) 390, 556, 618, 844
EaeI YGGCCR 1 cut(s) 862
Eam1104I CTCTTC 2 cut(s) 69, 566
EarI CTCTTC 2 cut(s) 69, 566
Eco31I GGTCTC 1 cut(s) 691
Eco32I GATATC 1 cut(s) 117
Eco47I GGWCC 1 cut(s) 646
Eco57I CTGAAG 1 cut(s) 407
EcoO109I RGGNCCY 1 cut(s) 646
EcoRV GATATC 1 cut(s) 117
EcoT22I ATGCAT 1 cut(s) 718
FaeI CATG 5 cut(s) 418, 602, 628, 844, 859
FalI AAGNNNNNCTT 2 cut(s) 794, 826
FaqI GGGAC 3 cut(s) 127, 659, 851
FatI CATG 5 cut(s) 414, 598, 624, 840, 855
FauI CCCGC 2 cut(s) 320, 828
FbaI TGATCA 1 cut(s) 618
FblI GTMKAC 1 cut(s) 494
Fnu4HI GCNGC 9 cut(s) 174, 210, 321, 419, 428, 582, 636, 657, 660
FokI GGATG 1 cut(s) 146
Fsp4HI GCNGC 9 cut(s) 174, 210, 321, 419, 428, 582, 636, 657, 660
FspBI CTAG 1 cut(s) 910
GluI GCNGC 9 cut(s) 174, 210, 321, 419, 428, 582, 636, 657, 660
GsaI CCCAGC 2 cut(s) 285, 642
GsuI CTGGAG 2 cut(s) 33, 855
HaeIII GGCC 1 cut(s) 864
HapII CCGG 1 cut(s) 519
Hin1II CATG 5 cut(s) 418, 602, 628, 844, 859
HindIII AAGCTT 3 cut(s) 479, 510, 766
HinfI GANTC 8 cut(s) 77, 85, 91, 308, 404, 503, 722, 875
HpaII CCGG 1 cut(s) 519
HphI GGTGA 2 cut(s) 50, 533
Hpy166II GTNNAC 2 cut(s) 58, 495
Hpy188I TCNGA 7 cut(s) 90, 232, 250, 388, 409, 508, 784
Hpy188III TCNNGA 4 cut(s) 95, 394, 599, 872
Hpy8I GTNNAC 2 cut(s) 58, 495
HpyAV CCTTC 1 cut(s) 46
HpyCH4III ACNGT 1 cut(s) 682
HpyCH4V TGCA 7 cut(s) 323, 418, 584, 656, 692, 716, 896
HpyF10VI GCNNNNNNNGC 4 cut(s) 107, 424, 427, 590
HpyF3I CTNAG 6 cut(s) 120, 231, 316, 387, 459, 482
Hsp92II CATG 5 cut(s) 418, 602, 628, 844, 859
Ksp22I TGATCA 1 cut(s) 618
Kzo9I GATC 4 cut(s) 390, 556, 618, 844
LmnI GCTCC 3 cut(s) 14, 171, 899
Lsp1109I GCAGC 9 cut(s) 160, 196, 307, 430, 439, 568, 646, 647, 668
LweI GCATC 1 cut(s) 643
MaeI CTAG 1 cut(s) 910
MalI GATC 4 cut(s) 392, 558, 620, 846
MboI GATC 4 cut(s) 390, 556, 618, 844
MboII GAAGA 3 cut(s) 86, 553, 805
MfeI CAATTG 1 cut(s) 669
MflI RGATCY 2 cut(s) 390, 844
MhlI GDGCHC 1 cut(s) 19
MlsI TGGCCA 1 cut(s) 864
MluCI AATT 4 cut(s) 201, 342, 669, 821
MluNI TGGCCA 1 cut(s) 864
MlyI GAGTC 2 cut(s) 86, 731
MmeI TCCRAC 1 cut(s) 444
MnlI CCTC 3 cut(s) 430, 433, 711
Mox20I TGGCCA 1 cut(s) 864
Mph1103I ATGCAT 1 cut(s) 718
MscI TGGCCA 1 cut(s) 864
MseI TTAA 3 cut(s) 255, 372, 548
Msp20I TGGCCA 1 cut(s) 864
MspA1I CMGCKG 2 cut(s) 638, 659
MspCI CTTAAG 1 cut(s) 254
MspI CCGG 1 cut(s) 519
MunI CAATTG 1 cut(s) 669
MwoI GCNNNNNNNGC 4 cut(s) 107, 424, 427, 590
NdeII GATC 4 cut(s) 390, 556, 618, 844
NlaIII CATG 5 cut(s) 418, 602, 628, 844, 859
NlaIV GGNNCC 2 cut(s) 647, 846
NsiI ATGCAT 1 cut(s) 718
NspI RCATGY 1 cut(s) 859
PagI TCATGA 1 cut(s) 598
PfeI GAWTC 6 cut(s) 85, 91, 308, 404, 503, 875
PkrI GCNGC 9 cut(s) 175, 211, 322, 420, 429, 583, 637, 658, 661
PleI GAGTC 2 cut(s) 85, 730
PpsI GAGTC 2 cut(s) 85, 730
PpuMI RGGWCCY 1 cut(s) 646
Psp5II RGGWCCY 1 cut(s) 646
PspFI CCCAGC 2 cut(s) 281, 638
PspN4I GGNNCC 2 cut(s) 647, 846
PspPI GGNCC 1 cut(s) 646
PspPPI RGGWCCY 1 cut(s) 646
PstI CTGCAG 1 cut(s) 325
PsuI RGATCY 2 cut(s) 390, 844
PvuII CAGCTG 2 cut(s) 638, 659
RsaI GTAC 1 cut(s) 907
RsaNI GTAC 1 cut(s) 906
SaqAI TTAA 3 cut(s) 255, 372, 548
SatI GCNGC 9 cut(s) 174, 210, 321, 419, 428, 582, 636, 657, 660
Sau3AI GATC 4 cut(s) 390, 556, 618, 844
Sau96I GGNCC 1 cut(s) 646
SchI GAGTC 2 cut(s) 86, 731
SduI GDGCHC 1 cut(s) 19
SfaNI GCATC 1 cut(s) 643
SfcI CTRYAG 2 cut(s) 265, 321
SinI GGWCC 1 cut(s) 646
SmlI CTYRAG 1 cut(s) 254
SmoI CTYRAG 1 cut(s) 254
Sse9I AATT 4 cut(s) 201, 342, 669, 821
SsiI CCGC 2 cut(s) 313, 835
SspMI CTAG 1 cut(s) 910
TaaI ACNGT 1 cut(s) 682
TasI AATT 4 cut(s) 201, 342, 669, 821
TfiI GAWTC 6 cut(s) 85, 91, 308, 404, 503, 875
Tru1I TTAA 3 cut(s) 255, 372, 548
Tru9I TTAA 3 cut(s) 255, 372, 548
TscAI CASTG 3 cut(s) 16, 108, 754
TseI GCWGC 9 cut(s) 173, 209, 320, 418, 427, 581, 635, 656, 659
TspDTI ATGAA 3 cut(s) 98, 587, 644
TspGWI ACGGA 1 cut(s) 23
TspRI CASTG 3 cut(s) 16, 108, 754
Vha464I CTTAAG 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 646
XapI RAATTY 2 cut(s) 201, 342
XceI RCATGY 1 cut(s) 859
XmiI GTMKAC 1 cut(s) 494
XspI CTAG 1 cut(s) 910
Zsp2I ATGCAT 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.