AT2G45270

Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in mitochondrial tRNAs that read codons beginning with adenine. Probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Involved in mitochondrial genome maintenance

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
18666409 .. 18669873
3465 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G45270.1

Sequence Viewer

Length: 1443 bp
ATGGTTCGTCTGTTTCTTACACTTTCTCCGGCGATTTCCCGATTCAATCTTTATCCAGGAATCTCTATTCTAGCGAGAAATAATAATTCTCTCAGATTACAAAAACACCATAAGCTTAAAACCAAAACCCCGACTTTCTCGTTAATCTCTCCTTCATCTTCACCCAATTTTCAAAGGACACGTTTTTATTCTACCGAAACAAGAATTTCCTCCTTACCCTATAGCGAAAACCCGAATTTTGATGATAATTTGGTTGTTCTGGGTATTGAAACGAGCTGCGACGACACTGCCGCAGCTGTTGTGAGAGGTAATGGTGAAATTCTCAGTCAAGTCATTTCTTCTCAGGCAGAATTGCTTGTCCAATATGGAGGCGTCGCTCCTAAACAGGCTGAAGAAGCACACTCCCGAGTTATCGATAAGGTTGTGCAAGACGCGCTTGATAAAGCCAATTTGACCGAGAAGGATCTCTCTGCTGTTGCTGTTACCATTGGACCTGGTTTGAGCCTCTGTCTACGTGTTGGTGTGCGCAAGGCTAGAAGAGTTGCTGGTAACTTCAGTCTCCCAATCGTTGGGGTGCATCACATGGAGGCTCATGCTCTCGTTGCTAGATTAGTGGAACAAGAATTAAGCTTCCCTTTCATGGCATTGCTTATATCAGGAGGGCACAATCTTCTAGTTCTTGCGCATAAGCTTGGTCAGTACACACAACTTGGGACTACAGTAGATGATGCTATAGGTGAGGCATTTGACAAGACAGCTAAATGGCTCGGCCTCGATATGCACAGGAGTGGTGGACCAGCTGTTGAAGAACTTGCTCTGGAGGGTGATGCAAAGTCTGTTAAGTTTAATGTTCCAATGAAATATCATAAAGATTGCAACTTTTCTTATGCTGGTTTGAAGACACAAGTGAGGCTAGCCATTGAAGCCAAAGAAATTGATGCTAAATGTCCCGTCTCTTCTGCAACAAACGAAGACAGAAGAAACCGTGCTGATATTGCCGCTTCTTTCCAGCGAGTAGCTGTCTTGCATCTGGAAGAAAAATGTGAGCGAGCAATAGACTGGGCATTAGAACTAGAGCCTTCTATTAAACATATGGTAATCTCTGGTGGTGTTGCTTCAAACAAGTATGTACGACTCCGACTTAATAACATTGTCGAAAACAAAAACCTGAAACTTGTTTGCCCTCCTCCTAGCCTCTGCACAGACAATGGAGTAATGGTGGCTTGGACTGGTCTCGAGCATTTTCGTGTAGGAAGATATGATCCACCTCCACCTGCAACTGAACCTGAGGATTATGTGTATGATCTTCGACCGAGGTGGCCTCTTGGCGAGGAGTATGCGAAAGGAAGAAGCGAAGCTCGTTCTATGAGAACTGCACGGATCCATCCGTCACTTACTTCAATCATTAGAGCAGATTCTCTTCAACAACAAACACAAACGTAG

Protein Analysis

480

Amino Acids

52.99

Weight (kDa)

8.54

Isoelectric Point (pI)

48.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TsaD PF00814 106 - 409 8.4e-84 tRNA N6-adenosine threonylcarbamoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1282
Acc16I TGCGCA 2 cut(s) 527, 684
Acc36I ACCTGC 1 cut(s) 1282
AccB7I CCANNNNNTGG 1 cut(s) 569
AccI GTMKAC 1 cut(s) 511
AccII CGCG 1 cut(s) 434
AciI CCGC 2 cut(s) 291, 999
AclWI GGATC 4 cut(s) 471, 1256, 1375, 1388
AcsI RAATTY 3 cut(s) 204, 235, 318
AcuI CTGAAG 2 cut(s) 411, 538
AcyI GRCGYC 1 cut(s) 372
AfaI GTAC 2 cut(s) 701, 1131
AfiI CCNNNNNNNGG 2 cut(s) 569, 640
AflIII ACRYGT 2 cut(s) 179, 514
AgsI TTSAA 9 cut(s) 46, 173, 269, 806, 898, 923, 1119, 1401, 1424
AjnI CCWGG 2 cut(s) 55, 493
AleI CACNNNNGTG 1 cut(s) 786
AluBI AGCT 9 cut(s) 115, 276, 296, 630, 691, 758, 800, 1019, 1358
AluI AGCT 9 cut(s) 115, 276, 296, 630, 691, 758, 800, 1019, 1358
Alw26I GTCTC 3 cut(s) 563, 958, 1238
AlwI GGATC 4 cut(s) 471, 1256, 1375, 1388
Ama87I CYCGRG 2 cut(s) 405, 1235
AoxI GGCC 2 cut(s) 769, 1319
ApeKI GCWGC 2 cut(s) 276, 293
ApoI RAATTY 3 cut(s) 204, 235, 318
AspLEI GCGC 3 cut(s) 436, 528, 685
AspS9I GGNCC 2 cut(s) 491, 794
AsuHPI GGTGA 4 cut(s) 153, 326, 749, 836
AsuNHI GCTAGC 1 cut(s) 913
AvaI CYCGRG 2 cut(s) 405, 1235
AvaII GGWCC 2 cut(s) 491, 794
AxyI CCTNAGG 1 cut(s) 1287
BaeGI GKGCMC 1 cut(s) 666
BamHI GGATCC 1 cut(s) 1380
BbsI GAAGAC 2 cut(s) 905, 978
BbvI GCAGC 2 cut(s) 263, 305
BccI CCATC 1 cut(s) 1392
BcgI CGANNNNNNTGC 4 cut(s) 269, 303, 1319, 1353
BciT130I CCWGG 2 cut(s) 57, 495
BcoDI GTCTC 3 cut(s) 563, 958, 1238
BfaI CTAG 7 cut(s) 71, 534, 606, 674, 914, 1073, 1191
BfmI CTRYAG 3 cut(s) 220, 717, 732
BfuAI ACCTGC 1 cut(s) 1282
BisI GCNGC 4 cut(s) 277, 291, 294, 999
BlsI GCNGC 4 cut(s) 278, 292, 295, 1000
Bme1390I CCNGG 2 cut(s) 57, 495
Bme18I GGWCC 2 cut(s) 491, 794
BmeT110I CYCGRG 2 cut(s) 405, 1235
BmgT120I GGNCC 2 cut(s) 491, 794
BmiI GGNNCC 1 cut(s) 1382
BmrFI CCNGG 2 cut(s) 57, 495
BmrI ACTGGG 1 cut(s) 1069
BmsI GCATC 5 cut(s) 586, 718, 817, 928, 1036
BmtI GCTAGC 1 cut(s) 917
BmuI ACTGGG 1 cut(s) 1069
BpiI GAAGAC 2 cut(s) 905, 978
BplI GAGNNNNNCTC 2 cut(s) 1306, 1338
BpmI CTGGAG 1 cut(s) 839
Bsa29I ATCGAT 1 cut(s) 414
BsaAI YACGTR 1 cut(s) 515
BsaHI GRCGYC 1 cut(s) 372
BsaI GGTCTC 1 cut(s) 1238
BsaJI CCNNGG 1 cut(s) 1313
BsaXI ACNNNNNCTCC 4 cut(s) 10, 40, 1203, 1233
Bsc4I CCNNNNNNNGG 2 cut(s) 569, 640
Bse1I ACTGG 2 cut(s) 1064, 1234
Bse21I CCTNAGG 1 cut(s) 1287
Bse3DI GCAATG 1 cut(s) 644
BseBI CCWGG 2 cut(s) 57, 495
BseCI ATCGAT 1 cut(s) 414
BseDI CCNNGG 1 cut(s) 1313
BseGI GGATG 1 cut(s) 1384
BseLI CCNNNNNNNGG 2 cut(s) 569, 640
BseMI GCAATG 1 cut(s) 644
BseMII CTCAG 4 cut(s) 106, 337, 356, 1278
BseNI ACTGG 2 cut(s) 1064, 1234
BseRI GAGGAG 2 cut(s) 1176, 1346
BseSI GKGCMC 1 cut(s) 666
BseXI GCAGC 2 cut(s) 263, 305
BsgI GTGCAG 2 cut(s) 1183, 1359
Bsh1236I CGCG 1 cut(s) 434
Bsh1285I CGRYCG 1 cut(s) 1313
BshFI GGCC 2 cut(s) 771, 1321
BshVI ATCGAT 1 cut(s) 414
BsiEI CGRYCG 1 cut(s) 1313
BsiHKCI CYCGRG 2 cut(s) 405, 1235
BsiSI CCGG 1 cut(s) 29
BslFI GGGAC 2 cut(s) 727, 933
BslI CCNNNNNNNGG 2 cut(s) 569, 640
BsmAI GTCTC 3 cut(s) 563, 958, 1238
BsmBI CGTCTC 1 cut(s) 958
BsmFI GGGAC 2 cut(s) 727, 933
BsnI GGCC 2 cut(s) 771, 1321
Bso31I GGTCTC 1 cut(s) 1238
BsoBI CYCGRG 2 cut(s) 405, 1235
Bsp1286I GDGCHC 1 cut(s) 666
Bsp143I GATC 4 cut(s) 463, 1261, 1303, 1380
BspACI CCGC 2 cut(s) 291, 999
BspANI GGCC 2 cut(s) 771, 1321
BspCNI CTCAG 4 cut(s) 105, 336, 355, 1279
BspDI ATCGAT 1 cut(s) 414
BspFNI CGCG 1 cut(s) 434
BspLI GGNNCC 1 cut(s) 1382
BspMI ACCTGC 1 cut(s) 1282
BspOI GCTAGC 1 cut(s) 917
BspPI GGATC 4 cut(s) 471, 1256, 1375, 1388
BspTNI GGTCTC 1 cut(s) 1238
BsrDI GCAATG 1 cut(s) 644
BsrI ACTGG 2 cut(s) 1064, 1234
BssECI CCNNGG 1 cut(s) 1313
BssMI GATC 4 cut(s) 463, 1261, 1303, 1380
BssNI GRCGYC 1 cut(s) 372
Bst2UI CCWGG 2 cut(s) 57, 495
Bst4CI ACNGT 2 cut(s) 721, 986
Bst6I CTCTTC 3 cut(s) 532, 961, 1425
BstACI GRCGYC 1 cut(s) 372
BstBAI YACGTR 1 cut(s) 515
BstC8I GCNNGC 2 cut(s) 915, 1050
BstDEI CTNAG 4 cut(s) 92, 323, 342, 1287
BstF5I GGATG 1 cut(s) 1384
BstFNI CGCG 1 cut(s) 434
BstHHI GCGC 3 cut(s) 436, 528, 685
BstKTI GATC 4 cut(s) 466, 1264, 1306, 1383
BstMAI GTCTC 3 cut(s) 563, 958, 1238
BstMBI GATC 4 cut(s) 463, 1261, 1303, 1380
BstMCI CGRYCG 1 cut(s) 1313
BstMWI GCNNNNNNNGC 5 cut(s) 395, 433, 602, 923, 995
BstNI CCWGG 2 cut(s) 57, 495
BstSCI CCNGG 2 cut(s) 55, 493
BstSFI CTRYAG 3 cut(s) 220, 717, 732
BstSLI GKGCMC 1 cut(s) 666
BstUI CGCG 1 cut(s) 434
BstV1I GCAGC 2 cut(s) 263, 305
BstV2I GAAGAC 2 cut(s) 905, 978
BstX2I RGATCY 2 cut(s) 463, 1380
BstYI RGATCY 2 cut(s) 463, 1380
Bsu15I ATCGAT 1 cut(s) 414
Bsu36I CCTNAGG 1 cut(s) 1287
BsuRI GGCC 2 cut(s) 771, 1321
BsuTUI ATCGAT 1 cut(s) 414
BtsCI GGATG 1 cut(s) 1384
BtsI GCAGTG 1 cut(s) 285
BtsIMutI CAGTG 1 cut(s) 285
BveI ACCTGC 1 cut(s) 1282
Cac8I GCNNGC 2 cut(s) 915, 1050
CfoI GCGC 3 cut(s) 436, 528, 685
Cfr13I GGNCC 2 cut(s) 491, 794
ClaI ATCGAT 1 cut(s) 414
CseI GACGC 2 cut(s) 361, 440
CsiI ACCWGGT 1 cut(s) 493
Csp6I GTAC 2 cut(s) 700, 1130
CviAII CATG 3 cut(s) 583, 593, 640
CviQI GTAC 2 cut(s) 700, 1130
DdeI CTNAG 4 cut(s) 92, 323, 342, 1287
DpnI GATC 4 cut(s) 465, 1263, 1305, 1382
DpnII GATC 4 cut(s) 463, 1261, 1303, 1380
Eam1104I CTCTTC 3 cut(s) 532, 961, 1425
EarI CTCTTC 3 cut(s) 532, 961, 1425
Eco31I GGTCTC 1 cut(s) 1238
Eco47I GGWCC 2 cut(s) 491, 794
Eco57I CTGAAG 2 cut(s) 411, 538
Eco81I CCTNAGG 1 cut(s) 1287
Eco88I CYCGRG 2 cut(s) 405, 1235
EcoRII CCWGG 2 cut(s) 55, 493
Esp3I CGTCTC 1 cut(s) 958
FaeI CATG 3 cut(s) 586, 596, 643
FalI AAGNNNNNCTT 4 cut(s) 420, 452, 619, 651
FaqI GGGAC 2 cut(s) 727, 933
FatI CATG 3 cut(s) 582, 592, 639
FauNDI CATATG 1 cut(s) 1092
FblI GTMKAC 1 cut(s) 511
Fnu4HI GCNGC 4 cut(s) 277, 291, 294, 999
FokI GGATG 1 cut(s) 1371
Fsp4HI GCNGC 4 cut(s) 277, 291, 294, 999
FspBI CTAG 7 cut(s) 71, 534, 606, 674, 914, 1073, 1191
FspI TGCGCA 2 cut(s) 527, 684
GlaI GCGC 3 cut(s) 435, 527, 684
GluI GCNGC 4 cut(s) 277, 291, 294, 999
GsuI CTGGAG 1 cut(s) 839
HaeIII GGCC 2 cut(s) 771, 1321
HapII CCGG 1 cut(s) 29
HgaI GACGC 2 cut(s) 361, 440
HhaI GCGC 3 cut(s) 436, 528, 685
Hin1I GRCGYC 1 cut(s) 372
Hin1II CATG 3 cut(s) 586, 596, 643
Hin6I GCGC 3 cut(s) 434, 526, 683
HinP1I GCGC 3 cut(s) 434, 526, 683
HindIII AAGCTT 3 cut(s) 113, 628, 689
HinfI GANTC 4 cut(s) 42, 60, 1134, 1415
HpaII CCGG 1 cut(s) 29
HphI GGTGA 4 cut(s) 153, 326, 749, 836
Hpy166II GTNNAC 3 cut(s) 512, 702, 794
Hpy188I TCNGA 2 cut(s) 95, 1139
Hpy188III TCNNGA 6 cut(s) 39, 405, 657, 818, 1031, 1235
Hpy8I GTNNAC 3 cut(s) 512, 702, 794
Hpy99I CGWCG 2 cut(s) 284, 377
HpyAV CCTTC 3 cut(s) 162, 454, 1089
HpyCH4III ACNGT 2 cut(s) 721, 986
HpyCH4IV ACGT 3 cut(s) 181, 514, 1439
HpyF10VI GCNNNNNNNGC 5 cut(s) 395, 433, 602, 923, 995
HpyF3I CTNAG 4 cut(s) 92, 323, 342, 1287
HpySE526I ACGT 3 cut(s) 181, 514, 1439
Hsp92I GRCGYC 1 cut(s) 372
Hsp92II CATG 3 cut(s) 586, 596, 643
HspAI GCGC 3 cut(s) 434, 526, 683
Kzo9I GATC 4 cut(s) 463, 1261, 1303, 1380
LmnI GCTCC 1 cut(s) 382
Lsp1109I GCAGC 2 cut(s) 263, 305
LweI GCATC 5 cut(s) 586, 718, 817, 928, 1036
MabI ACCWGGT 1 cut(s) 493
MaeI CTAG 7 cut(s) 71, 534, 606, 674, 914, 1073, 1191
MaeII ACGT 3 cut(s) 181, 514, 1439
MaeIII GTNAC 3 cut(s) 481, 548, 1389
MalI GATC 4 cut(s) 465, 1263, 1305, 1382
MboI GATC 4 cut(s) 463, 1261, 1303, 1380
MflI RGATCY 2 cut(s) 463, 1380
MhlI GDGCHC 1 cut(s) 666
MlyI GAGTC 1 cut(s) 1128
MmeI TCCRAC 1 cut(s) 1162
MseI TTAA 7 cut(s) 117, 143, 626, 840, 846, 1086, 1143
MslI CAYNNNNRTG 2 cut(s) 786, 1245
MspA1I CMGCKG 2 cut(s) 296, 800
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 2 cut(s) 57, 495
MvaI CCWGG 2 cut(s) 57, 495
MvnI CGCG 1 cut(s) 434
MwoI GCNNNNNNNGC 5 cut(s) 395, 433, 602, 923, 995
NdeI CATATG 1 cut(s) 1092
NdeII GATC 4 cut(s) 463, 1261, 1303, 1380
NheI GCTAGC 1 cut(s) 913
NlaIII CATG 3 cut(s) 586, 596, 643
NlaIV GGNNCC 1 cut(s) 1382
NmeAIII GCCGAG 1 cut(s) 747
NmuCI GTSAC 1 cut(s) 1389
NsbI TGCGCA 2 cut(s) 527, 684
OliI CACNNNNGTG 1 cut(s) 786
PaeR7I CTCGAG 1 cut(s) 1235
PaqCI CACCTGC 1 cut(s) 1282
PfeI GAWTC 3 cut(s) 42, 60, 1415
PflMI CCANNNNNTGG 1 cut(s) 569
PfoI TCCNGGA 1 cut(s) 55
PkrI GCNGC 4 cut(s) 278, 292, 295, 1000
PleI GAGTC 1 cut(s) 1128
PpsI GAGTC 1 cut(s) 1128
Ppu21I YACGTR 1 cut(s) 515
Psp6I CCWGG 2 cut(s) 55, 493
PspGI CCWGG 2 cut(s) 55, 493
PspN4I GGNNCC 1 cut(s) 1382
PspPI GGNCC 2 cut(s) 491, 794
PsuI RGATCY 2 cut(s) 463, 1380
PvuII CAGCTG 2 cut(s) 296, 800
RsaI GTAC 2 cut(s) 701, 1131
RsaNI GTAC 2 cut(s) 700, 1130
RseI CAYNNNNRTG 2 cut(s) 786, 1245
SaqAI TTAA 7 cut(s) 117, 143, 626, 840, 846, 1086, 1143
SatI GCNGC 4 cut(s) 277, 291, 294, 999
Sau3AI GATC 4 cut(s) 463, 1261, 1303, 1380
Sau96I GGNCC 2 cut(s) 491, 794
SchI GAGTC 1 cut(s) 1128
ScrFI CCNGG 2 cut(s) 57, 495
SduI GDGCHC 1 cut(s) 666
SexAI ACCWGGT 1 cut(s) 493
SfaNI GCATC 5 cut(s) 586, 718, 817, 928, 1036
SfcI CTRYAG 3 cut(s) 220, 717, 732
Sfr274I CTCGAG 1 cut(s) 1235
SinI GGWCC 2 cut(s) 491, 794
SlaI CTCGAG 1 cut(s) 1235
SmiMI CAYNNNNRTG 2 cut(s) 786, 1245
SmlI CTYRAG 1 cut(s) 1235
SmoI CTYRAG 1 cut(s) 1235
SsiI CCGC 2 cut(s) 291, 999
SspMI CTAG 7 cut(s) 71, 534, 606, 674, 914, 1073, 1191
StyD4I CCNGG 2 cut(s) 55, 493
TaaI ACNGT 2 cut(s) 721, 986
TaiI ACGT 3 cut(s) 184, 517, 1442
TaqI TCGA 5 cut(s) 414, 774, 1155, 1236, 1309
TaqII GACCGA 2 cut(s) 470, 1327
TatI WGTACW 1 cut(s) 699
TauI GCSGC 2 cut(s) 293, 1001
TfiI GAWTC 3 cut(s) 42, 60, 1415
Tru1I TTAA 7 cut(s) 117, 143, 626, 840, 846, 1086, 1143
Tru9I TTAA 7 cut(s) 117, 143, 626, 840, 846, 1086, 1143
TscAI CASTG 1 cut(s) 292
TseFI GTSAC 1 cut(s) 1389
TseI GCWGC 2 cut(s) 276, 293
Tsp45I GTSAC 1 cut(s) 1389
TspDTI ATGAA 3 cut(s) 144, 628, 872
TspGWI ACGGA 2 cut(s) 1377, 1393
TspRI CASTG 1 cut(s) 292
Van91I CCANNNNNTGG 1 cut(s) 569
VpaK11BI GGWCC 2 cut(s) 491, 794
XapI RAATTY 3 cut(s) 204, 235, 318
XhoI CTCGAG 1 cut(s) 1235
XmiI GTMKAC 1 cut(s) 511
XspI CTAG 7 cut(s) 71, 534, 606, 674, 914, 1073, 1191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.