Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007964

Physical Location & Seq

Genomic Coordinates Forward (+)

42882432 .. 42884252

Gene Structure 1821 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57575

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGAAAGCTCGTAAAATTGCTGGTACTTTTAGCTTACCTATTATTGGTGTACATCACAAGGAGGCTCATGCTCTTGTCGCCAGGCTAACTGAACAAGAACTACAATTTCCTTTCATGGCCCTGCTTATTTCAGGAGGACACAATGTACTCATCCTTGCTCGTGATCTTGGTCATTATGTACAACTTGGGACCACAATAGATGATGCTATTGGTGAGGCATATGATAAGATAGCAAAATGGCTTGGTCTTGACTTGAGGAGAAGTGGTGGGCCAGCTATAGAAGAGCTTGCCCGAGAGGGTGATGCAAAATCAATCAAATTCTCGACTCCAATGAAACTACATAAAGATTGCAACTTCTCGTACGCTGGTCTGAAGACTCAAGTGAGGCTGGCAATTGAATCTAAAAATATTAATGCTACAATTCCTGTTTCTTCAGCAACTAGCGAAGATAGAAGGTCTCGAGCTGATATTGCTGCCTCTTTTCAGAGAGTTGCAGTATTACATCTGGAAGAAAGGTGTGAACGAGCAATTGAATGGGCTTTGAAGATTGAACCTTCTGTAAAACATATGGTGTGTAAACTGCAATTTTTGGTTCTGTATGCTCCAACCCACCTTTACTTCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000408 GO:0002949 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016020 GO:0016070 GO:0019866 GO:0022414 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0070525 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M22

Protein Analysis

208

Amino Acids

23.19

Weight (kDa)

8.96

Isoelectric Point (pI)

54.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TsaD	PF00814	3 - 192	2.1e-40	tRNA N6-adenosine threonylcarbamoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45270
fragaria_vesca	FvH4_7g11490 FvH4_7g11490 FvH4_7g11490
malus_domestica	MD02G1206900.v1.1
prunus_persica	Prupe.2G143300_v2.0.a1
pyrus_communis	pycom02g16910
rosa_chinensis	RchiOBHm_Chr1g0349791 RchiOBHm_Chr1g0349801 RchiOBHm_Chr1g0349851 RchiOBHm_Chr1g0349931
rosa_laevigata	RLG00000028515
rosa_multiflora	Rmu_sc0000778.1_g000003 Rmu_sc0005220.1_g000015 Rmu_sc0007377.1_g000005
rosa_roxburghii	Rroxscaffold_4G00305270
rosa_rugosa	Rorug01G0207000 Rorug01G0207000
rosa_samantha	Rh1AG223600 Rh1BG190800 Rh1CG208400
rosa_wichuraiana	Rw0G007620 Rw1G019050 Rw1G019060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	317
AcuI	CTGAAG	2 cut(s)	392, 417
AfaI	GTAC	5 cut(s)	25, 51, 147, 180, 362
AfiI	CCNNNNNNNGG	1 cut(s)	44
AgsI	TTSAA	4 cut(s)	398, 533, 544, 551
AjnI	CCWGG	1 cut(s)	80
AluBI	AGCT	5 cut(s)	8, 33, 275, 286, 464
AluI	AGCT	5 cut(s)	8, 33, 275, 286, 464
Alw26I	GTCTC	1 cut(s)	462
Ama87I	CYCGRG	2 cut(s)	291, 459
AoxI	GGCC	2 cut(s)	117, 269
ApeKI	GCWGC	1 cut(s)	473
ApoI	RAATTY	1 cut(s)	317
AseI	ATTAAT	1 cut(s)	411
AspS9I	GGNCC	3 cut(s)	118, 189, 269
AsuHPI	GGTGA	2 cut(s)	224, 311
AvaI	CYCGRG	2 cut(s)	291, 459
AvaII	GGWCC	1 cut(s)	189
BauI	CACGAG	1 cut(s)	159
BbsI	GAAGAC	1 cut(s)	380
BbvI	GCAGC	1 cut(s)	460
BciT130I	CCWGG	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	462
BfaI	CTAG	1 cut(s)	441
BfmI	CTRYAG	1 cut(s)	276
BisI	GCNGC	1 cut(s)	474
BlsI	GCNGC	1 cut(s)	475
Bme1390I	CCNGG	1 cut(s)	82
Bme18I	GGWCC	1 cut(s)	189
BmeT110I	CYCGRG	2 cut(s)	291, 459
BmgT120I	GGNCC	3 cut(s)	118, 189, 269
BmiI	GGNNCC	1 cut(s)	190
BmrFI	CCNGG	1 cut(s)	82
BmsI	GCATC	2 cut(s)	193, 292
BpiI	GAAGAC	1 cut(s)	380
BpuEI	CTTGAG	2 cut(s)	274, 363
BsaI	GGTCTC	1 cut(s)	462
BsaXI	ACNNNNNCTCC	2 cut(s)	250, 280
Bsc4I	CCNNNNNNNGG	1 cut(s)	44
BseBI	CCWGG	1 cut(s)	82
BseGI	GGATG	1 cut(s)	150
BseLI	CCNNNNNNNGG	1 cut(s)	44
BseRI	GAGGAG	1 cut(s)	271
BseXI	GCAGC	1 cut(s)	460
BshFI	GGCC	2 cut(s)	119, 271
BsiHKCI	CYCGRG	2 cut(s)	291, 459
BsiWI	CGTACG	1 cut(s)	360
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	44
BsmAI	GTCTC	1 cut(s)	462
BsmFI	GGGAC	1 cut(s)	202
BsnI	GGCC	2 cut(s)	119, 271
Bso31I	GGTCTC	1 cut(s)	462
BsoBI	CYCGRG	2 cut(s)	291, 459
Bsp1407I	TGTACA	2 cut(s)	49, 178
Bsp143I	GATC	1 cut(s)	163
BspANI	GGCC	2 cut(s)	119, 271
BspLI	GGNNCC	1 cut(s)	190
BspQI	GCTCTTC	1 cut(s)	276
BspTNI	GGTCTC	1 cut(s)	462
BsrGI	TGTACA	2 cut(s)	49, 178
BssMI	GATC	1 cut(s)	163
BssSI	CACGAG	1 cut(s)	159
Bst2BI	CACGAG	1 cut(s)	159
Bst2UI	CCWGG	1 cut(s)	82
Bst6I	CTCTTC	1 cut(s)	276
BstAUI	TGTACA	2 cut(s)	49, 178
BstC8I	GCNNGC	3 cut(s)	273, 288, 390
BstF5I	GGATG	1 cut(s)	150
BstKTI	GATC	1 cut(s)	166
BstMAI	GTCTC	1 cut(s)	462
BstMBI	GATC	1 cut(s)	163
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 470
BstNI	CCWGG	1 cut(s)	82
BstSCI	CCNGG	1 cut(s)	80
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	1 cut(s)	460
BstV2I	GAAGAC	1 cut(s)	380
BsuRI	GGCC	2 cut(s)	119, 271
BtsCI	GGATG	1 cut(s)	150
Cac8I	GCNNGC	3 cut(s)	273, 288, 390
Cfr13I	GGNCC	3 cut(s)	118, 189, 269
Csp6I	GTAC	5 cut(s)	24, 50, 146, 179, 361
CviAII	CATG	2 cut(s)	68, 115
CviQI	GTAC	5 cut(s)	24, 50, 146, 179, 361
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco31I	GGTCTC	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	189
Eco57I	CTGAAG	2 cut(s)	392, 417
Eco88I	CYCGRG	2 cut(s)	291, 459
EcoRII	CCWGG	1 cut(s)	80
FaeI	CATG	2 cut(s)	71, 118
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	2 cut(s)	67, 114
FauNDI	CATATG	2 cut(s)	220, 567
Fnu4HI	GCNGC	1 cut(s)	474
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	1 cut(s)	474
FspBI	CTAG	1 cut(s)	441
GluI	GCNGC	1 cut(s)	474
HaeIII	GGCC	2 cut(s)	119, 271
Hin1II	CATG	2 cut(s)	71, 118
HinfI	GANTC	3 cut(s)	325, 376, 398
HphI	GGTGA	2 cut(s)	224, 311
Hpy166II	GTNNAC	3 cut(s)	50, 521, 578
Hpy188I	TCNGA	2 cut(s)	372, 486
Hpy188III	TCNNGA	6 cut(s)	132, 161, 248, 322, 459, 506
Hpy8I	GTNNAC	3 cut(s)	50, 521, 578
HpyAV	CCTTC	2 cut(s)	447, 564
HpyCH4V	TGCA	4 cut(s)	305, 351, 494, 583
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 470
Hsp92II	CATG	2 cut(s)	71, 118
Kzo9I	GATC	1 cut(s)	163
LguI	GCTCTTC	1 cut(s)	276
LmnI	GCTCC	1 cut(s)	607
Lsp1109I	GCAGC	1 cut(s)	460
LweI	GCATC	2 cut(s)	193, 292
MaeI	CTAG	1 cut(s)	441
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	6 cut(s)	293, 385, 423, 458, 521, 556
MfeI	CAATTG	2 cut(s)	393, 528
MluCI	AATT	7 cut(s)	15, 104, 317, 393, 420, 528, 584
MlyI	GAGTC	2 cut(s)	319, 370
MnlI	CCTC	7 cut(s)	55, 128, 208, 249, 289, 378, 487
MseI	TTAA	1 cut(s)	411
MspR9I	CCNGG	1 cut(s)	82
MunI	CAATTG	2 cut(s)	393, 528
MvaI	CCWGG	1 cut(s)	82
MwoI	GCNNNNNNNGC	2 cut(s)	77, 470
NdeI	CATATG	2 cut(s)	220, 567
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	2 cut(s)	71, 118
NlaIV	GGNNCC	1 cut(s)	190
PaeR7I	CTCGAG	1 cut(s)	459
PciSI	GCTCTTC	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	398
Pfl23II	CGTACG	1 cut(s)	360
PkrI	GCNGC	1 cut(s)	475
PleI	GAGTC	2 cut(s)	319, 370
PpsI	GAGTC	2 cut(s)	319, 370
PshBI	ATTAAT	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	80
PspGI	CCWGG	1 cut(s)	80
PspLI	CGTACG	1 cut(s)	360
PspN4I	GGNNCC	1 cut(s)	190
PspPI	GGNCC	3 cut(s)	118, 189, 269
PsrI	GAACNNNNNNTAC	2 cut(s)	84, 116
RsaI	GTAC	5 cut(s)	25, 51, 147, 180, 362
RsaNI	GTAC	5 cut(s)	24, 50, 146, 179, 361
SapI	GCTCTTC	1 cut(s)	276
SaqAI	TTAA	1 cut(s)	411
SatI	GCNGC	1 cut(s)	474
Sau3AI	GATC	1 cut(s)	163
Sau96I	GGNCC	3 cut(s)	118, 189, 269
SchI	GAGTC	2 cut(s)	319, 370
ScrFI	CCNGG	1 cut(s)	82
SfaNI	GCATC	2 cut(s)	193, 292
SfcI	CTRYAG	1 cut(s)	276
Sfr274I	CTCGAG	1 cut(s)	459
SinI	GGWCC	1 cut(s)	189
SlaI	CTCGAG	1 cut(s)	459
SmlI	CTYRAG	3 cut(s)	253, 378, 459
SmoI	CTYRAG	3 cut(s)	253, 378, 459
Sse9I	AATT	7 cut(s)	15, 104, 317, 393, 420, 528, 584
SspI	AATATT	1 cut(s)	409
SspMI	CTAG	1 cut(s)	441
StyD4I	CCNGG	1 cut(s)	80
TaqI	TCGA	2 cut(s)	323, 460
TasI	AATT	7 cut(s)	15, 104, 317, 393, 420, 528, 584
TatI	WGTACW	3 cut(s)	49, 145, 178
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	1 cut(s)	411
Tru9I	TTAA	1 cut(s)	411
TseI	GCWGC	1 cut(s)	473
TspDTI	ATGAA	4 cut(s)	17, 103, 347, 610
VpaK11BI	GGWCC	1 cut(s)	189
VspI	ATTAAT	1 cut(s)	411
XapI	RAATTY	1 cut(s)	317
XhoI	CTCGAG	1 cut(s)	459
XspI	CTAG	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.