MD02G1206900.v1.1

Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in mitochondrial tRNAs that read codons beginning with adenine. Probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Involved in mitochondrial genome maintenance

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Forward (+)
20866427 .. 20871550
5124 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1206900.v1.1.491

Sequence Viewer

Length: 1419 bp
ATGGCGCTCTCTTCCAGATTTTGGCGCCTAAATCTCTTCCCAAAACCTTCACTTTCCCCCTTACAAACCACTCTCAAATCCCTAAAACCCCTCCGACAAAAACTTTGTCCAATCCTTTCACTTCCCATTTCTTCTTCTTCTTCTTCATTGAACTCCTCCAATTCCCTTTTCTCGACATCGAAAAATTCTGCCTTTTCGGAACCTCACAGTCGAACTCCATCTCCCCAAGATGATCTTATTGTTCTGGGAATCGAAACCAGCTGCGACGACACCGCTGCCGCCATCGTGAGAGGCAATGGTGAAATCCTCAGCCAAGTTGTGTCTTCTCAGGCAGATTTGCTTGCTCAATATGGAGGTGTTGCTCCAAAAATGGCAGAGGAAGCACATTTGCAAGTGATTGATAAGGTTGTGCAAGAAGCACTTGACAAAGCTAAGTTAACTGAGACGAATTTATCTGCAGTGGCGGTTACTATTGGTCCTGGTTTAGGCCTTTGTCTTCGTGTTGGTGTGCGGAAAGCTCGTGAAATTGCTGGTAGCTGTAACTTACCAATCATTGGTGTACATCACATGGAGGCTCATGCTCTTGTAGCCAGGTTAACGGAAAGAGAGTTGCAATTTCCTTTCGTGGCCTTGCTTATTTCAGGAGGACACAATCTACTCATCCTTGCTCGTGATCTTGGTCAGTATGTACAACTTGGCACCACAATAGACGATGCAGTTGGCGAGGCATATGACAAGACTGCAAAATGGCTTGGCCTTGACTTGAGGAGAAGTGGCGGGCCAGCTATTGAAGAGCTTGCTCGTGAGGGTGATGCCAAATCAGTCAAATTCTCAACCCCAATGAAACAACACAAAGATTGCAACTTCTCGTACGCTGGTCTGAAGACTCAAGTGAGATTGGCAATTGAATCTAAAAATATTAATACTACAATTCCTCTTTCCTCAGCAAGTAGCGAAGATAGAAGGATTCGAGCTGATATTGCTGCTTCTTTTCAGCGAGTCGCAGTGTTACATCTAGAGGAAAGGTGTGAGCGAGCAATTGAATGGGCCCTGAAAATTGAACCTTCTGTAAAACATTTGGTTGTCTCTGGAGGCGTTGCATCAAATCAATATGTTCGGTCTCGCCTTGATCAGGTTGTCAAGAAAAATAGCTTACAACTAGTCTGTCCTCCTCCCTGCCTTTGTACTGACAACGGTGTAATGGTGGCTTGGACTGGCATTGAGAACTTTTGTATGGGAAGATTTGATCCACCACCACCTGCAGATGAACCTGAAGATATTGTGTACGAATTGCGGCCAAGGTGGCCATTGGGGGAGGAATATGCTGAGGGAAGAAGTGAAGCTCGCTCAATGAGAACGGCCCGCATGCATCCTTCTCTGACGTCTATGATCCAAGAATCTTTGCAACAGCAACCGTAG

Protein Analysis

473

Amino Acids

51.55

Weight (kDa)

7.13

Isoelectric Point (pI)

57.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TsaD PF00814 101 - 404 4.9e-85 tRNA N6-adenosine threonylcarbamoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1267
AatII GACGTC 1 cut(s) 1385
Acc36I ACCTGC 1 cut(s) 1267
AccB1I GGYRCC 2 cut(s) 24, 698
AccB7I CCANNNNNTGG 2 cut(s) 21, 554
AciI CCGC 7 cut(s) 273, 279, 464, 511, 777, 1294, 1363
AclWI GGATC 2 cut(s) 1241, 1384
AcoI YGGCCR 2 cut(s) 1295, 1304
AcsI RAATTY 3 cut(s) 184, 448, 827
AcuI CTGAAG 2 cut(s) 902, 1293
AcyI GRCGYC 2 cut(s) 25, 1382
AfaI GTAC 5 cut(s) 561, 690, 872, 1186, 1286
AfiI CCNNNNNNNGG 4 cut(s) 21, 485, 554, 1132
AgsI TTSAA 5 cut(s) 151, 791, 908, 1043, 1061
AhlI ACTAGT 1 cut(s) 1159
AjnI CCWGG 2 cut(s) 478, 590
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AloI GAACNNNNNNTCC 2 cut(s) 205, 237
AluBI AGCT 9 cut(s) 261, 431, 518, 537, 785, 796, 974, 1152, 1343
AluI AGCT 9 cut(s) 261, 431, 518, 537, 785, 796, 974, 1152, 1343
Alw26I GTCTC 3 cut(s) 437, 1090, 1125
AlwI GGATC 2 cut(s) 1241, 1384
AoxI GGCC 8 cut(s) 487, 627, 754, 779, 1047, 1295, 1304, 1359
ApaI GGGCCC 1 cut(s) 1051
ApeKI GCWGC 3 cut(s) 261, 275, 983
ApoI RAATTY 3 cut(s) 184, 448, 827
ArsI GACNNNNNNTTYG 4 cut(s) 87, 91, 119, 123
AseI ATTAAT 1 cut(s) 921
AspLEI GCGC 2 cut(s) 7, 27
AspS9I GGNCC 5 cut(s) 476, 779, 1047, 1048, 1360
AsuHPI GGTGA 2 cut(s) 311, 821
AvaII GGWCC 1 cut(s) 476
BaeGI GKGCMC 1 cut(s) 1051
BalI TGGCCA 1 cut(s) 1306
BanI GGYRCC 2 cut(s) 24, 698
BanII GRGCYC 1 cut(s) 1051
BauI CACGAG 3 cut(s) 519, 669, 801
BbsI GAAGAC 3 cut(s) 315, 488, 890
BbvCI CCTCAGC 3 cut(s) 308, 943, 1326
BbvI GCAGC 3 cut(s) 248, 262, 970
BccI CCATC 2 cut(s) 226, 290
BceAI ACGGC 1 cut(s) 1374
BcgI CGANNNNNNTGC 2 cut(s) 257, 291
BciT130I CCWGG 2 cut(s) 480, 592
BclI TGATCA 1 cut(s) 1129
BcoDI GTCTC 3 cut(s) 437, 1090, 1125
BcuI ACTAGT 1 cut(s) 1159
BfaI CTAG 2 cut(s) 1016, 1160
BfmI CTRYAG 2 cut(s) 456, 1260
BfoI RGCGCY 2 cut(s) 8, 28
BfuAI ACCTGC 1 cut(s) 1267
BglI GCCNNNNNGGC 1 cut(s) 1303
BisI GCNGC 5 cut(s) 262, 276, 279, 984, 1295
BlsI GCNGC 5 cut(s) 263, 277, 280, 985, 1296
Bme1390I CCNGG 2 cut(s) 480, 592
Bme18I GGWCC 1 cut(s) 476
BmgT120I GGNCC 5 cut(s) 476, 779, 1047, 1048, 1360
BmiI GGNNCC 4 cut(s) 26, 201, 700, 1049
BmrFI CCNGG 2 cut(s) 480, 592
BmsI GCATC 4 cut(s) 703, 802, 1109, 1378
BpiI GAAGAC 3 cut(s) 315, 488, 890
BpmI CTGGAG 1 cut(s) 1110
Bpu10I CCTNAGC 3 cut(s) 308, 943, 1326
BpuEI CTTGAG 2 cut(s) 784, 873
BsaHI GRCGYC 2 cut(s) 25, 1382
BsaI GGTCTC 1 cut(s) 1125
BsaJI CCNNGG 1 cut(s) 1298
BsaXI ACNNNNNCTCC 2 cut(s) 205, 235
Bsc4I CCNNNNNNNGG 4 cut(s) 21, 485, 554, 1132
Bse1I ACTGG 1 cut(s) 1219
Bse3DI GCAATG 1 cut(s) 301
BseBI CCWGG 2 cut(s) 480, 592
BseDI CCNNGG 1 cut(s) 1298
BseGI GGATG 2 cut(s) 660, 1369
BseLI CCNNNNNNNGG 4 cut(s) 21, 485, 554, 1132
BseMI GCAATG 1 cut(s) 301
BseMII CTCAG 5 cut(s) 322, 341, 432, 957, 1317
BseNI ACTGG 1 cut(s) 1219
BseRI GAGGAG 3 cut(s) 145, 781, 1161
BseSI GKGCMC 1 cut(s) 1051
BseXI GCAGC 3 cut(s) 248, 262, 970
BshFI GGCC 8 cut(s) 489, 629, 756, 781, 1049, 1297, 1306, 1361
BshNI GGYRCC 2 cut(s) 24, 698
BsiWI CGTACG 1 cut(s) 870
BslI CCNNNNNNNGG 4 cut(s) 21, 485, 554, 1132
BsmAI GTCTC 3 cut(s) 437, 1090, 1125
BsmBI CGTCTC 1 cut(s) 437
BsnI GGCC 8 cut(s) 489, 629, 756, 781, 1049, 1297, 1306, 1361
Bso31I GGTCTC 1 cut(s) 1125
Bsp120I GGGCCC 1 cut(s) 1047
Bsp1286I GDGCHC 1 cut(s) 1051
Bsp1407I TGTACA 2 cut(s) 559, 688
Bsp143I GATC 5 cut(s) 232, 673, 1129, 1246, 1389
BspACI CCGC 7 cut(s) 273, 279, 464, 511, 777, 1294, 1363
BspANI GGCC 8 cut(s) 489, 629, 756, 781, 1049, 1297, 1306, 1361
BspCNI CTCAG 5 cut(s) 321, 340, 433, 956, 1318
BspLI GGNNCC 4 cut(s) 26, 201, 700, 1049
BspMAI CTGCAG 2 cut(s) 460, 1264
BspMI ACCTGC 1 cut(s) 1267
BspPI GGATC 2 cut(s) 1241, 1384
BspQI GCTCTTC 1 cut(s) 786
BspT107I GGYRCC 2 cut(s) 24, 698
BspTNI GGTCTC 1 cut(s) 1125
BsrDI GCAATG 1 cut(s) 301
BsrGI TGTACA 2 cut(s) 559, 688
BsrI ACTGG 1 cut(s) 1219
BssECI CCNNGG 1 cut(s) 1298
BssMI GATC 5 cut(s) 232, 673, 1129, 1246, 1389
BssNI GRCGYC 2 cut(s) 25, 1382
BssSI CACGAG 3 cut(s) 519, 669, 801
BssT1I CCWWGG 1 cut(s) 1298
Bst2BI CACGAG 3 cut(s) 519, 669, 801
Bst2UI CCWGG 2 cut(s) 480, 592
Bst4CI ACNGT 3 cut(s) 209, 1196, 1416
Bst6I CTCTTC 3 cut(s) 16, 41, 786
BstACI GRCGYC 2 cut(s) 25, 1382
BstAUI TGTACA 2 cut(s) 559, 688
BstC8I GCNNGC 8 cut(s) 342, 779, 783, 798, 1035, 1345, 1363, 1367
BstDEI CTNAG 6 cut(s) 308, 327, 432, 441, 943, 1326
BstENI CCTNNNNNAGG 2 cut(s) 483, 1130
BstF5I GGATG 2 cut(s) 660, 1369
BstH2I RGCGCY 2 cut(s) 8, 28
BstHHI GCGC 2 cut(s) 7, 27
BstKTI GATC 5 cut(s) 235, 676, 1132, 1249, 1392
BstMAI GTCTC 3 cut(s) 437, 1090, 1125
BstMBI GATC 5 cut(s) 232, 673, 1129, 1246, 1389
BstMWI GCNNNNNNNGC 4 cut(s) 380, 587, 980, 1303
BstNI CCWGG 2 cut(s) 480, 592
BstNSI RCATGY 1 cut(s) 1369
BstSCI CCNGG 2 cut(s) 478, 590
BstSFI CTRYAG 2 cut(s) 456, 1260
BstSLI GKGCMC 1 cut(s) 1051
BstV1I GCAGC 3 cut(s) 248, 262, 970
BstV2I GAAGAC 3 cut(s) 315, 488, 890
BsuRI GGCC 8 cut(s) 489, 629, 756, 781, 1049, 1297, 1306, 1361
BtsCI GGATG 2 cut(s) 660, 1369
BtsI GCAGTG 2 cut(s) 465, 1011
BtsIMutI CAGTG 2 cut(s) 465, 1011
BveI ACCTGC 1 cut(s) 1267
Cac8I GCNNGC 8 cut(s) 342, 779, 783, 798, 1035, 1345, 1363, 1367
CfoI GCGC 2 cut(s) 7, 27
Cfr13I GGNCC 5 cut(s) 476, 779, 1047, 1048, 1360
Csp6I GTAC 5 cut(s) 560, 689, 871, 1185, 1285
CviAII CATG 3 cut(s) 568, 578, 1366
CviQI GTAC 5 cut(s) 560, 689, 871, 1185, 1285
DdeI CTNAG 6 cut(s) 308, 327, 432, 441, 943, 1326
DinI GGCGCC 1 cut(s) 26
DpnI GATC 5 cut(s) 234, 675, 1131, 1248, 1391
DpnII GATC 5 cut(s) 232, 673, 1129, 1246, 1389
EaeI YGGCCR 2 cut(s) 1295, 1304
Eam1104I CTCTTC 3 cut(s) 16, 41, 786
EarI CTCTTC 3 cut(s) 16, 41, 786
Eco130I CCWWGG 1 cut(s) 1298
Eco147I AGGCCT 1 cut(s) 489
Eco24I GRGCYC 1 cut(s) 1051
Eco31I GGTCTC 1 cut(s) 1125
Eco47I GGWCC 1 cut(s) 476
Eco57I CTGAAG 2 cut(s) 902, 1293
EcoNI CCTNNNNNAGG 2 cut(s) 483, 1130
EcoO109I RGGNCCY 1 cut(s) 1048
EcoRII CCWGG 2 cut(s) 478, 590
EcoT14I CCWWGG 1 cut(s) 1298
EcoT22I ATGCAT 1 cut(s) 1371
EcoT38I GRGCYC 1 cut(s) 1051
EgeI GGCGCC 1 cut(s) 26
EheI GGCGCC 1 cut(s) 26
ErhI CCWWGG 1 cut(s) 1298
Esp3I CGTCTC 1 cut(s) 437
FaeI CATG 3 cut(s) 571, 581, 1369
FalI AAGNNNNNCTT 4 cut(s) 219, 251, 405, 437
FatI CATG 3 cut(s) 567, 577, 1365
FauI CCCGC 2 cut(s) 770, 1370
FauNDI CATATG 1 cut(s) 730
FbaI TGATCA 1 cut(s) 1129
Fnu4HI GCNGC 5 cut(s) 262, 276, 279, 984, 1295
FokI GGATG 2 cut(s) 647, 1356
FriOI GRGCYC 1 cut(s) 1051
Fsp4HI GCNGC 5 cut(s) 262, 276, 279, 984, 1295
FspBI CTAG 2 cut(s) 1016, 1160
GlaI GCGC 2 cut(s) 6, 26
GluI GCNGC 5 cut(s) 262, 276, 279, 984, 1295
GsuI CTGGAG 1 cut(s) 1110
HaeII RGCGCY 2 cut(s) 8, 28
HaeIII GGCC 8 cut(s) 489, 629, 756, 781, 1049, 1297, 1306, 1361
HhaI GCGC 2 cut(s) 7, 27
Hin1I GRCGYC 2 cut(s) 25, 1382
Hin1II CATG 3 cut(s) 571, 581, 1369
Hin6I GCGC 2 cut(s) 5, 25
HinP1I GCGC 2 cut(s) 5, 25
HincII GTYRAC 2 cut(s) 438, 597
HindII GTYRAC 2 cut(s) 438, 597
HinfI GANTC 6 cut(s) 249, 886, 908, 967, 999, 1397
HpaI GTTAAC 2 cut(s) 438, 597
HphI GGTGA 2 cut(s) 311, 821
Hpy166II GTNNAC 4 cut(s) 438, 560, 597, 1285
Hpy188I TCNGA 4 cut(s) 95, 199, 882, 1380
Hpy8I GTNNAC 4 cut(s) 438, 560, 597, 1285
Hpy99I CGWCG 1 cut(s) 269
HpyAV CCTTC 4 cut(s) 57, 957, 1074, 1383
HpyCH4III ACNGT 3 cut(s) 209, 1196, 1416
HpyCH4IV ACGT 1 cut(s) 1382
HpyF10VI GCNNNNNNNGC 4 cut(s) 380, 587, 980, 1303
HpyF3I CTNAG 6 cut(s) 308, 327, 432, 441, 943, 1326
HpySE526I ACGT 1 cut(s) 1382
Hsp92I GRCGYC 2 cut(s) 25, 1382
Hsp92II CATG 3 cut(s) 571, 581, 1369
HspAI GCGC 2 cut(s) 5, 25
KasI GGCGCC 1 cut(s) 24
Ksp22I TGATCA 1 cut(s) 1129
KspAI GTTAAC 2 cut(s) 438, 597
Kzo9I GATC 5 cut(s) 232, 673, 1129, 1246, 1389
LguI GCTCTTC 1 cut(s) 786
LmnI GCTCC 1 cut(s) 367
Lsp1109I GCAGC 3 cut(s) 248, 262, 970
LweI GCATC 4 cut(s) 703, 802, 1109, 1378
MaeI CTAG 2 cut(s) 1016, 1160
MaeII ACGT 1 cut(s) 1382
MaeIII GTNAC 3 cut(s) 466, 539, 1008
MalI GATC 5 cut(s) 234, 675, 1131, 1248, 1391
MboI GATC 5 cut(s) 232, 673, 1129, 1246, 1389
MfeI CAATTG 2 cut(s) 903, 1038
MhlI GDGCHC 1 cut(s) 1051
MlsI TGGCCA 1 cut(s) 1306
MluNI TGGCCA 1 cut(s) 1306
Mly113I GGCGCC 1 cut(s) 25
MlyI GAGTC 2 cut(s) 880, 1008
MmeI TCCRAC 1 cut(s) 118
Mox20I TGGCCA 1 cut(s) 1306
Mph1103I ATGCAT 1 cut(s) 1371
MscI TGGCCA 1 cut(s) 1306
MseI TTAA 3 cut(s) 437, 596, 921
Msp20I TGGCCA 1 cut(s) 1306
MspA1I CMGCKG 2 cut(s) 261, 275
MspR9I CCNGG 2 cut(s) 480, 592
MunI CAATTG 2 cut(s) 903, 1038
MvaI CCWGG 2 cut(s) 480, 592
MwoI GCNNNNNNNGC 4 cut(s) 380, 587, 980, 1303
NarI GGCGCC 1 cut(s) 25
NdeI CATATG 1 cut(s) 730
NdeII GATC 5 cut(s) 232, 673, 1129, 1246, 1389
NlaIII CATG 3 cut(s) 571, 581, 1369
NlaIV GGNNCC 4 cut(s) 26, 201, 700, 1049
NsiI ATGCAT 1 cut(s) 1371
NspI RCATGY 1 cut(s) 1369
PaeI GCATGC 1 cut(s) 1369
PaqCI CACCTGC 1 cut(s) 1267
PceI AGGCCT 1 cut(s) 489
PciSI GCTCTTC 1 cut(s) 786
PfeI GAWTC 4 cut(s) 249, 908, 967, 1397
Pfl23II CGTACG 1 cut(s) 870
PflMI CCANNNNNTGG 2 cut(s) 21, 554
PkrI GCNGC 5 cut(s) 263, 277, 280, 985, 1296
PleI GAGTC 2 cut(s) 880, 1007
PluTI GGCGCC 1 cut(s) 28
PpsI GAGTC 2 cut(s) 880, 1007
PshBI ATTAAT 1 cut(s) 921
Psp6I CCWGG 2 cut(s) 478, 590
PspGI CCWGG 2 cut(s) 478, 590
PspLI CGTACG 1 cut(s) 870
PspN4I GGNNCC 4 cut(s) 26, 201, 700, 1049
PspOMI GGGCCC 1 cut(s) 1047
PspPI GGNCC 5 cut(s) 476, 779, 1047, 1048, 1360
PstI CTGCAG 2 cut(s) 460, 1264
PvuII CAGCTG 1 cut(s) 261
RsaI GTAC 5 cut(s) 561, 690, 872, 1186, 1286
RsaNI GTAC 5 cut(s) 560, 689, 871, 1185, 1285
SapI GCTCTTC 1 cut(s) 786
SaqAI TTAA 3 cut(s) 437, 596, 921
SatI GCNGC 5 cut(s) 262, 276, 279, 984, 1295
Sau3AI GATC 5 cut(s) 232, 673, 1129, 1246, 1389
Sau96I GGNCC 5 cut(s) 476, 779, 1047, 1048, 1360
SchI GAGTC 2 cut(s) 880, 1008
ScrFI CCNGG 2 cut(s) 480, 592
SduI GDGCHC 1 cut(s) 1051
SfaNI GCATC 4 cut(s) 703, 802, 1109, 1378
SfcI CTRYAG 2 cut(s) 456, 1260
SfiI GGCCNNNNNGGCC 1 cut(s) 1303
SfoI GGCGCC 1 cut(s) 26
SinI GGWCC 1 cut(s) 476
SmlI CTYRAG 2 cut(s) 763, 888
SmoI CTYRAG 2 cut(s) 763, 888
SpeI ACTAGT 1 cut(s) 1159
SphI GCATGC 1 cut(s) 1369
SseBI AGGCCT 1 cut(s) 489
SsiI CCGC 7 cut(s) 273, 279, 464, 511, 777, 1294, 1363
SspDI GGCGCC 1 cut(s) 24
SspI AATATT 1 cut(s) 919
SspMI CTAG 2 cut(s) 1016, 1160
StuI AGGCCT 1 cut(s) 489
StyD4I CCNGG 2 cut(s) 478, 590
StyI CCWWGG 1 cut(s) 1298
TaaI ACNGT 3 cut(s) 209, 1196, 1416
TaiI ACGT 1 cut(s) 1385
TaqI TCGA 5 cut(s) 173, 179, 211, 252, 970
TaqII GACCGA 1 cut(s) 1107
TatI WGTACW 3 cut(s) 559, 688, 1184
TauI GCSGC 2 cut(s) 281, 1297
TfiI GAWTC 4 cut(s) 249, 908, 967, 1397
Tru1I TTAA 3 cut(s) 437, 596, 921
Tru9I TTAA 3 cut(s) 437, 596, 921
TscAI CASTG 2 cut(s) 465, 1011
TseI GCWGC 3 cut(s) 261, 275, 983
TspDTI ATGAA 3 cut(s) 135, 857, 1281
TspGWI ACGGA 1 cut(s) 614
TspRI CASTG 2 cut(s) 465, 1011
Van91I CCANNNNNTGG 2 cut(s) 21, 554
VpaK11BI GGWCC 1 cut(s) 476
VspI ATTAAT 1 cut(s) 921
XagI CCTNNNNNAGG 2 cut(s) 483, 1130
XapI RAATTY 3 cut(s) 184, 448, 827
XbaI TCTAGA 1 cut(s) 1015
XceI RCATGY 1 cut(s) 1369
XspI CTAG 2 cut(s) 1016, 1160
ZraI GACGTC 1 cut(s) 1383
Zsp2I ATGCAT 1 cut(s) 1371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.