Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0007964

Physical Location & Seq

Genomic Coordinates Forward (+)

41747431 .. 41748671

Gene Structure 1241 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G019060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCAGAAGAAGCGCACTTGCAAGTGATTGATCGGGTTGTGCCAGAAGCGCTCGACAAAGCTAATTTATCTGAGAGAGATTTGTCTGCAGTTGCTGTTACCATTGGTCCTGGTTTAAGCCTTTGTCTTCGTGTTGGTGTACGGAAAGCTCGTAAAATTGCTGGTAGCCAGGTACCGTTAACTGAACAAGGACTACAATTTCCTTTCATGGCTCTGCTTATTTCAGGAGGACACAATGTACTCATCCTTGCTCGTGATCTTGGTCATTATGTTGTACAACTTGGGACCACAATAGATGATGACATTGGTGAGGCATGTGATAAGATAGCAAAATGGCTTGGTCTTGACTTGAGGAGAAGTGGTGCCAGCTATAGAAGAGCTAGCCCGAGAGGGGGATGCAAAATCAATCAAATTCTCGGTAATCTTTCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000408 GO:0002949 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016020 GO:0016070 GO:0019866 GO:0022414 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0070525 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M22

Protein Analysis

144

Amino Acids

15.43

Weight (kDa)

8.54

Isoelectric Point (pI)

52.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TsaD	PF00814	2 - 54	5.5e-13	tRNA N6-adenosine threonylcarbamoyltransferase
TsaD	PF00814	61 - 128	3.6e-11	tRNA N6-adenosine threonylcarbamoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45270
fragaria_vesca	FvH4_7g11490 FvH4_7g11490 FvH4_7g11490
malus_domestica	MD02G1206900.v1.1
prunus_persica	Prupe.2G143300_v2.0.a1
pyrus_communis	pycom02g16910
rosa_chinensis	RchiOBHm_Chr1g0349791 RchiOBHm_Chr1g0349801 RchiOBHm_Chr1g0349851 RchiOBHm_Chr1g0349931
rosa_laevigata	RLG00000028515
rosa_multiflora	Rmu_sc0000778.1_g000003 Rmu_sc0005220.1_g000015 Rmu_sc0007377.1_g000005
rosa_roxburghii	Rroxscaffold_4G00305270
rosa_rugosa	Rorug01G0207000 Rorug01G0207000
rosa_samantha	Rh1AG223600 Rh1BG190800 Rh1CG208400
rosa_wichuraiana	Rw0G007620 Rw1G019050 Rw1G019060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	172
AccB1I	GGYRCC	2 cut(s)	172, 362
AcsI	RAATTY	1 cut(s)	411
AfaI	GTAC	4 cut(s)	141, 174, 240, 276
AfeI	AGCGCT	1 cut(s)	51
AfiI	CCNNNNNNNGG	2 cut(s)	391, 392
AjnI	CCWGG	2 cut(s)	109, 168
AluBI	AGCT	4 cut(s)	62, 149, 369, 380
AluI	AGCT	4 cut(s)	62, 149, 369, 380
AlwNI	CAGNNNCTG	1 cut(s)	95
Ama87I	CYCGRG	1 cut(s)	385
Aor51HI	AGCGCT	1 cut(s)	51
ApoI	RAATTY	1 cut(s)	411
Asp718I	GGTACC	1 cut(s)	172
AspLEI	GCGC	2 cut(s)	16, 52
AspS9I	GGNCC	2 cut(s)	107, 285
AsuHPI	GGTGA	1 cut(s)	320
AsuNHI	GCTAGC	1 cut(s)	380
AvaI	CYCGRG	1 cut(s)	385
AvaII	GGWCC	2 cut(s)	107, 285
BanI	GGYRCC	2 cut(s)	172, 362
BarI	GAAGNNNNNNTAC	1 cut(s)	412
BauI	CACGAG	1 cut(s)	252
BbsI	GAAGAC	1 cut(s)	119
BciT130I	CCWGG	2 cut(s)	111, 170
BfaI	CTAG	1 cut(s)	381
BfmI	CTRYAG	2 cut(s)	87, 370
BfoI	RGCGCY	1 cut(s)	53
Bme1390I	CCNGG	2 cut(s)	111, 170
Bme18I	GGWCC	2 cut(s)	107, 285
BmeT110I	CYCGRG	1 cut(s)	385
BmgT120I	GGNCC	2 cut(s)	107, 285
BmiI	GGNNCC	3 cut(s)	174, 286, 364
BmrFI	CCNGG	2 cut(s)	111, 170
BmsI	GCATC	1 cut(s)	386
BmtI	GCTAGC	1 cut(s)	384
BpiI	GAAGAC	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	370
BsaXI	ACNNNNNCTCC	2 cut(s)	346, 376
Bsc4I	CCNNNNNNNGG	2 cut(s)	391, 392
BseBI	CCWGG	2 cut(s)	111, 170
BseGI	GGATG	2 cut(s)	243, 401
BseLI	CCNNNNNNNGG	2 cut(s)	391, 392
BseMII	CTCAG	1 cut(s)	63
BseRI	GAGGAG	1 cut(s)	367
BshNI	GGYRCC	2 cut(s)	172, 362
BsiHKCI	CYCGRG	1 cut(s)	385
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	2 cut(s)	391, 392
BsmFI	GGGAC	1 cut(s)	298
BsoBI	CYCGRG	1 cut(s)	385
Bsp1407I	TGTACA	1 cut(s)	274
Bsp143I	GATC	2 cut(s)	31, 256
BspCNI	CTCAG	1 cut(s)	64
BspLI	GGNNCC	3 cut(s)	174, 286, 364
BspMAI	CTGCAG	1 cut(s)	91
BspOI	GCTAGC	1 cut(s)	384
BspQI	GCTCTTC	1 cut(s)	370
BspT107I	GGYRCC	2 cut(s)	172, 362
BsrGI	TGTACA	1 cut(s)	274
BssMI	GATC	2 cut(s)	31, 256
BssSI	CACGAG	1 cut(s)	252
Bst2BI	CACGAG	1 cut(s)	252
Bst2UI	CCWGG	2 cut(s)	111, 170
Bst4CI	ACNGT	1 cut(s)	177
Bst6I	CTCTTC	1 cut(s)	370
BstAUI	TGTACA	1 cut(s)	274
BstC8I	GCNNGC	2 cut(s)	367, 382
BstDEI	CTNAG	1 cut(s)	72
BstF5I	GGATG	2 cut(s)	243, 401
BstH2I	RGCGCY	1 cut(s)	53
BstHHI	GCGC	2 cut(s)	16, 52
BstKTI	GATC	2 cut(s)	34, 259
BstMBI	GATC	2 cut(s)	31, 256
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 49
BstNI	CCWGG	2 cut(s)	111, 170
BstNSI	RCATGY	1 cut(s)	318
BstSCI	CCNGG	2 cut(s)	109, 168
BstSFI	CTRYAG	2 cut(s)	87, 370
BstV2I	GAAGAC	1 cut(s)	119
BtsCI	GGATG	2 cut(s)	243, 401
Cac8I	GCNNGC	2 cut(s)	367, 382
CaiI	CAGNNNCTG	1 cut(s)	95
CfoI	GCGC	2 cut(s)	16, 52
Cfr13I	GGNCC	2 cut(s)	107, 285
Csp6I	GTAC	4 cut(s)	140, 173, 239, 275
CviAII	CATG	2 cut(s)	208, 315
CviJI	RGCY	9 cut(s)	62, 120, 149, 168, 212, 337, 369, 380, 384
CviKI_1	RGCY	9 cut(s)	62, 120, 149, 168, 212, 337, 369, 380, 384
CviQI	GTAC	4 cut(s)	140, 173, 239, 275
DdeI	CTNAG	1 cut(s)	72
DpnI	GATC	2 cut(s)	33, 258
DpnII	GATC	2 cut(s)	31, 256
Eam1104I	CTCTTC	1 cut(s)	370
EarI	CTCTTC	1 cut(s)	370
Eco47I	GGWCC	2 cut(s)	107, 285
Eco47III	AGCGCT	1 cut(s)	51
Eco88I	CYCGRG	1 cut(s)	385
EcoRII	CCWGG	2 cut(s)	109, 168
FaeI	CATG	2 cut(s)	211, 318
FaiI	YATR	4 cut(s)	209, 270, 316, 372
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	2 cut(s)	207, 314
FokI	GGATG	2 cut(s)	230, 408
FspBI	CTAG	1 cut(s)	381
GlaI	GCGC	2 cut(s)	15, 51
HaeII	RGCGCY	1 cut(s)	53
HhaI	GCGC	2 cut(s)	16, 52
Hin1II	CATG	2 cut(s)	211, 318
Hin6I	GCGC	2 cut(s)	14, 50
HinP1I	GCGC	2 cut(s)	14, 50
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HpaI	GTTAAC	1 cut(s)	180
HphI	GGTGA	1 cut(s)	320
Hpy166II	GTNNAC	2 cut(s)	140, 180
Hpy188I	TCNGA	1 cut(s)	73
Hpy188III	TCNNGA	3 cut(s)	225, 254, 344
Hpy8I	GTNNAC	2 cut(s)	140, 180
HpyCH4III	ACNGT	1 cut(s)	177
HpyCH4V	TGCA	3 cut(s)	22, 89, 399
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 49
HpyF3I	CTNAG	1 cut(s)	72
Hsp92II	CATG	2 cut(s)	211, 318
HspAI	GCGC	2 cut(s)	14, 50
KpnI	GGTACC	1 cut(s)	176
KspAI	GTTAAC	1 cut(s)	180
Kzo9I	GATC	2 cut(s)	31, 256
LguI	GCTCTTC	1 cut(s)	370
LpnPI	CCDG	8 cut(s)	57, 96, 123, 147, 155, 182, 210, 379
LweI	GCATC	1 cut(s)	386
MaeI	CTAG	1 cut(s)	381
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	2 cut(s)	33, 258
MboI	GATC	2 cut(s)	31, 256
MboII	GAAGA	4 cut(s)	20, 119, 387, 420
MluCI	AATT	4 cut(s)	64, 156, 197, 411
MnlI	CCTC	4 cut(s)	221, 304, 345, 383
MseI	TTAA	3 cut(s)	116, 179, 433
MspR9I	CCNGG	2 cut(s)	111, 170
MvaI	CCWGG	2 cut(s)	111, 170
MwoI	GCNNNNNNNGC	2 cut(s)	11, 49
NdeII	GATC	2 cut(s)	31, 256
NheI	GCTAGC	1 cut(s)	380
NlaIII	CATG	2 cut(s)	211, 318
NlaIV	GGNNCC	3 cut(s)	174, 286, 364
NspI	RCATGY	1 cut(s)	318
PciSI	GCTCTTC	1 cut(s)	370
PcsI	WCGNNNNNNNCGW	1 cut(s)	148
Psp6I	CCWGG	2 cut(s)	109, 168
PspGI	CCWGG	2 cut(s)	109, 168
PspN4I	GGNNCC	3 cut(s)	174, 286, 364
PspPI	GGNCC	2 cut(s)	107, 285
PsrI	GAACNNNNNNTAC	2 cut(s)	177, 209
PstI	CTGCAG	1 cut(s)	91
PstNI	CAGNNNCTG	1 cut(s)	95
RsaI	GTAC	4 cut(s)	141, 174, 240, 276
RsaNI	GTAC	4 cut(s)	140, 173, 239, 275
SapI	GCTCTTC	1 cut(s)	370
SaqAI	TTAA	3 cut(s)	116, 179, 433
Sau3AI	GATC	2 cut(s)	31, 256
Sau96I	GGNCC	2 cut(s)	107, 285
ScrFI	CCNGG	2 cut(s)	111, 170
SetI	ASST	5 cut(s)	64, 151, 174, 371, 382
SfaNI	GCATC	1 cut(s)	386
SfcI	CTRYAG	2 cut(s)	87, 370
SinI	GGWCC	2 cut(s)	107, 285
SmlI	CTYRAG	1 cut(s)	349
SmoI	CTYRAG	1 cut(s)	349
Sse9I	AATT	4 cut(s)	64, 156, 197, 411
SspMI	CTAG	1 cut(s)	381
StyD4I	CCNGG	2 cut(s)	109, 168
TaaI	ACNGT	1 cut(s)	177
TaqI	TCGA	1 cut(s)	54
TasI	AATT	4 cut(s)	64, 156, 197, 411
TatI	WGTACW	2 cut(s)	238, 274
Tru1I	TTAA	3 cut(s)	116, 179, 433
Tru9I	TTAA	3 cut(s)	116, 179, 433
TspDTI	ATGAA	1 cut(s)	196
TspGWI	ACGGA	1 cut(s)	157
VpaK11BI	GGWCC	2 cut(s)	107, 285
XapI	RAATTY	1 cut(s)	411
XceI	RCATGY	1 cut(s)	318
XspI	CTAG	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.