Rmu_sc0005220.1_g000015

Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in mitochondrial tRNAs that read codons beginning with adenine. Probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Involved in mitochondrial genome maintenance

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005220.1
Physical Location & Seq
Reverse (-)
86063 .. 90548
4486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005220.1_g000015.1.cds

Sequence Viewer

Length: 1398 bp
atggccctctcttccgcattttggcgcctaaatctcctctcaaaaccctcggtttctctcagagctctaaaacccttgaagcccaaaccaaggcccatgtcctcgcttcccatttcttctaaattaaatccctccaacttctccgcatcaaagaatccaacttttctagacccaaaaactcgtactccgtatccccaacatgatcttattgttctcggcatcgaaaccagctgcgacgatacagccgccgccgtcgtgaaaagcaacggtgaaattcgcagccaagttatttcttctcaggcagatttgcttgctcaatatggaggtgttactcccaaaatggcagaagaagcgcacttgcaagtgattgatcgggttgtgcaagaagcgctcaacaaagctaatttaaccgagagagatttgtctgcagttgctgttaccattggtcctggtttaagcctttgtcttcgtgttggtgtgcggaaagctcgtaaaattgctggtacttttagcttaccaattattggtgtacatcacatggaggctcatgctcttgtagccaggttaactgaacaagaactacaatttcctttcatggctctgcttatttcaggaggacacaatgtactcatccttgctcgtgatcttggtcattatgtacaacttgggaccacaatagatgatgctattggtgaggcatatgataagatagcaaaatggcttggtcttgacttgaggagtagtggtgggccagctatagaagagcttgcccgagagggtgatgcaaaatcaatcaaattctcgactccaatgaaacaacataaagattgcaacttctcgtacgctggtctgaagactcaagtgaggctggcaattgaatctaaaaatattgatgctacaattcctgtttcttcagcaactagtgaagatagaaggtcccgagctgatattgctgcctcttttcaggttactagtagagttgcagtgttacatctagaagaaaggtgcgaacgagcaattgaatgggctctgaagattgaaccttctgtaaaacatatggttgtgtctggtggtgttgcatcaaatcaatatgttcgggctcaacttgatcaggttgtcaagaaaaacaacttacaacttgtatgccctcctcccagtctttgtacagacaacggtgtaatggtggcatggactggcattgagaacttttgtatgggaagatttgatccaccaccacctgcggatgaacctgaagatattgagtttgatctacggccaaggtggccattgggggaagaatacactgagggaaggagtgaagctcggtcaatgagaacggcccgcattcatccatctctgacatctctcgtccaagcatctttgcaacagcaactatag

Protein Analysis

465

Amino Acids

50.89

Weight (kDa)

8.1

Isoelectric Point (pI)

52.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1246
Acc36I ACCTGC 1 cut(s) 1246
AccB1I GGYRCC 1 cut(s) 24
AccB7I CCANNNNNTGG 1 cut(s) 524
AciI CCGC 7 cut(s) 15, 144, 246, 249, 481, 1241, 1342
AclWI GGATC 1 cut(s) 1220
AcoI YGGCCR 2 cut(s) 1274, 1283
AcsI RAATTY 2 cut(s) 273, 797
AcuI CTGAAG 4 cut(s) 872, 897, 1052, 1272
AcyI GRCGYC 1 cut(s) 25
AfaI GTAC 7 cut(s) 184, 505, 531, 627, 660, 842, 1165
AfeI AGCGCT 1 cut(s) 390
AfiI CCNNNNNNNGG 3 cut(s) 21, 90, 524
AgsI TTSAA 4 cut(s) 79, 878, 1022, 1040
AhlI ACTAGT 2 cut(s) 920, 971
AjnI CCWGG 2 cut(s) 448, 560
AluBI AGCT 9 cut(s) 65, 231, 401, 488, 513, 755, 766, 944, 1322
AluI AGCT 9 cut(s) 65, 231, 401, 488, 513, 755, 766, 944, 1322
Alw21I GWGCWC 1 cut(s) 67
AlwI GGATC 1 cut(s) 1220
AlwNI CAGNNNCTG 1 cut(s) 434
Ama87I CYCGRG 2 cut(s) 771, 939
Aor51HI AGCGCT 1 cut(s) 390
AoxI GGCC 6 cut(s) 3, 92, 749, 1274, 1283, 1338
ApeKI GCWGC 3 cut(s) 231, 279, 953
ApoI RAATTY 2 cut(s) 273, 797
AspLEI GCGC 3 cut(s) 27, 355, 391
AspS9I GGNCC 7 cut(s) 4, 93, 446, 669, 749, 936, 1339
AsuHPI GGTGA 3 cut(s) 281, 704, 791
AvaI CYCGRG 2 cut(s) 771, 939
AvaII GGWCC 3 cut(s) 446, 669, 936
BalI TGGCCA 1 cut(s) 1285
BanI GGYRCC 1 cut(s) 24
BanII GRGCYC 3 cut(s) 67, 1030, 1102
BauI CACGAG 1 cut(s) 639
BbsI GAAGAC 2 cut(s) 458, 860
Bbv12I GWGCWC 1 cut(s) 67
BbvI GCAGC 3 cut(s) 218, 291, 940
BccI CCATC 1 cut(s) 1360
BceAI ACGGC 3 cut(s) 236, 1289, 1353
BciT130I CCWGG 2 cut(s) 450, 562
BciVI GTATCC 1 cut(s) 201
BclI TGATCA 1 cut(s) 1108
BcuI ACTAGT 2 cut(s) 920, 971
BfaI CTAG 4 cut(s) 167, 921, 972, 995
BfmI CTRYAG 3 cut(s) 426, 756, 1394
BfoI RGCGCY 2 cut(s) 28, 392
BfuAI ACCTGC 1 cut(s) 1246
BfuI GTATCC 1 cut(s) 201
BglI GCCNNNNNGGC 1 cut(s) 1282
BisI GCNGC 5 cut(s) 232, 246, 249, 280, 954
BlsI GCNGC 5 cut(s) 233, 247, 250, 281, 955
Bme1390I CCNGG 2 cut(s) 450, 562
Bme18I GGWCC 3 cut(s) 446, 669, 936
BmeT110I CYCGRG 2 cut(s) 771, 939
BmgT120I GGNCC 7 cut(s) 4, 93, 446, 669, 749, 936, 1339
BmiI GGNNCC 3 cut(s) 26, 670, 938
BmrFI CCNGG 2 cut(s) 450, 562
BmrI ACTGGG 1 cut(s) 1149
BmsI GCATC 7 cut(s) 155, 228, 673, 772, 883, 1088, 1385
BmuI ACTGGG 1 cut(s) 1149
BpiI GAAGAC 2 cut(s) 458, 860
BplI GAGNNNNNCTC 2 cut(s) 1306, 1338
BpuEI CTTGAG 2 cut(s) 754, 843
BsaHI GRCGYC 1 cut(s) 25
BsaJI CCNNGG 3 cut(s) 48, 89, 1277
BsaXI ACNNNNNCTCC 4 cut(s) 169, 199, 730, 760
Bsc4I CCNNNNNNNGG 3 cut(s) 21, 90, 524
Bse1I ACTGG 2 cut(s) 1155, 1198
BseBI CCWGG 2 cut(s) 450, 562
BseDI CCNNGG 3 cut(s) 48, 89, 1277
BseGI GGATG 3 cut(s) 630, 1249, 1348
BseLI CCNNNNNNNGG 3 cut(s) 21, 90, 524
BseMII CTCAG 3 cut(s) 73, 311, 1296
BseNI ACTGG 2 cut(s) 1155, 1198
BseRI GAGGAG 3 cut(s) 26, 751, 1140
BseXI GCAGC 3 cut(s) 218, 291, 940
BshFI GGCC 6 cut(s) 5, 94, 751, 1276, 1285, 1340
BshNI GGYRCC 1 cut(s) 24
BsiHKAI GWGCWC 1 cut(s) 67
BsiHKCI CYCGRG 2 cut(s) 771, 939
BsiWI CGTACG 1 cut(s) 840
BslFI GGGAC 2 cut(s) 682, 922
BslI CCNNNNNNNGG 3 cut(s) 21, 90, 524
BsmFI GGGAC 2 cut(s) 682, 922
BsmI GAATGC 1 cut(s) 1344
BsnI GGCC 6 cut(s) 5, 94, 751, 1276, 1285, 1340
BsoBI CYCGRG 2 cut(s) 771, 939
Bsp1286I GDGCHC 3 cut(s) 67, 1030, 1102
Bsp1407I TGTACA 3 cut(s) 529, 658, 1163
Bsp143I GATC 6 cut(s) 202, 370, 643, 1108, 1225, 1267
BspACI CCGC 7 cut(s) 15, 144, 246, 249, 481, 1241, 1342
BspANI GGCC 6 cut(s) 5, 94, 751, 1276, 1285, 1340
BspCNI CTCAG 3 cut(s) 72, 310, 1297
BspLI GGNNCC 3 cut(s) 26, 670, 938
BspMAI CTGCAG 1 cut(s) 430
BspMI ACCTGC 1 cut(s) 1246
BspPI GGATC 1 cut(s) 1220
BspQI GCTCTTC 1 cut(s) 756
BspT107I GGYRCC 1 cut(s) 24
BsrGI TGTACA 3 cut(s) 529, 658, 1163
BsrI ACTGG 2 cut(s) 1155, 1198
BssECI CCNNGG 3 cut(s) 48, 89, 1277
BssMI GATC 6 cut(s) 202, 370, 643, 1108, 1225, 1267
BssNI GRCGYC 1 cut(s) 25
BssSI CACGAG 1 cut(s) 639
BssT1I CCWWGG 2 cut(s) 89, 1277
Bst2BI CACGAG 1 cut(s) 639
Bst2UI CCWGG 2 cut(s) 450, 562
Bst4CI ACNGT 2 cut(s) 269, 1175
Bst6I CTCTTC 2 cut(s) 16, 756
BstACI GRCGYC 1 cut(s) 25
BstAUI TGTACA 3 cut(s) 529, 658, 1163
BstC8I GCNNGC 5 cut(s) 312, 753, 768, 870, 1342
BstDEI CTNAG 3 cut(s) 59, 297, 1305
BstF5I GGATG 3 cut(s) 630, 1249, 1348
BstH2I RGCGCY 2 cut(s) 28, 392
BstHHI GCGC 3 cut(s) 27, 355, 391
BstKTI GATC 6 cut(s) 205, 373, 646, 1111, 1228, 1270
BstMBI GATC 6 cut(s) 202, 370, 643, 1108, 1225, 1267
BstMWI GCNNNNNNNGC 5 cut(s) 350, 388, 557, 950, 1282
BstNI CCWGG 2 cut(s) 450, 562
BstSCI CCNGG 2 cut(s) 448, 560
BstSFI CTRYAG 3 cut(s) 426, 756, 1394
BstV1I GCAGC 3 cut(s) 218, 291, 940
BstV2I GAAGAC 2 cut(s) 458, 860
BsuI GTATCC 1 cut(s) 201
BsuRI GGCC 6 cut(s) 5, 94, 751, 1276, 1285, 1340
BtsCI GGATG 3 cut(s) 630, 1249, 1348
BtsI GCAGTG 1 cut(s) 990
BtsIMutI CAGTG 2 cut(s) 990, 1302
BveI ACCTGC 1 cut(s) 1246
Cac8I GCNNGC 5 cut(s) 312, 753, 768, 870, 1342
CaiI CAGNNNCTG 1 cut(s) 434
CfoI GCGC 3 cut(s) 27, 355, 391
Cfr13I GGNCC 7 cut(s) 4, 93, 446, 669, 749, 936, 1339
Csp6I GTAC 7 cut(s) 183, 504, 530, 626, 659, 841, 1164
CviAII CATG 6 cut(s) 97, 200, 538, 548, 595, 1188
CviQI GTAC 7 cut(s) 183, 504, 530, 626, 659, 841, 1164
DdeI CTNAG 3 cut(s) 59, 297, 1305
DinI GGCGCC 1 cut(s) 26
DpnI GATC 6 cut(s) 204, 372, 645, 1110, 1227, 1269
DpnII GATC 6 cut(s) 202, 370, 643, 1108, 1225, 1267
EaeI YGGCCR 2 cut(s) 1274, 1283
Eam1104I CTCTTC 2 cut(s) 16, 756
EarI CTCTTC 2 cut(s) 16, 756
Ecl136II GAGCTC 1 cut(s) 65
Eco130I CCWWGG 2 cut(s) 89, 1277
Eco24I GRGCYC 3 cut(s) 67, 1030, 1102
Eco47I GGWCC 3 cut(s) 446, 669, 936
Eco47III AGCGCT 1 cut(s) 390
Eco53kI GAGCTC 1 cut(s) 65
Eco57I CTGAAG 4 cut(s) 872, 897, 1052, 1272
Eco88I CYCGRG 2 cut(s) 771, 939
EcoICRI GAGCTC 1 cut(s) 65
EcoO109I RGGNCCY 1 cut(s) 936
EcoRII CCWGG 2 cut(s) 448, 560
EcoT14I CCWWGG 2 cut(s) 89, 1277
EcoT38I GRGCYC 3 cut(s) 67, 1030, 1102
EgeI GGCGCC 1 cut(s) 26
EheI GGCGCC 1 cut(s) 26
ErhI CCWWGG 2 cut(s) 89, 1277
FaeI CATG 6 cut(s) 100, 203, 541, 551, 598, 1191
FaqI GGGAC 2 cut(s) 682, 922
FatI CATG 6 cut(s) 96, 199, 537, 547, 594, 1187
FauI CCCGC 1 cut(s) 1349
FauNDI CATATG 2 cut(s) 700, 1056
FbaI TGATCA 1 cut(s) 1108
Fnu4HI GCNGC 5 cut(s) 232, 246, 249, 280, 954
FokI GGATG 3 cut(s) 617, 1256, 1335
FriOI GRGCYC 3 cut(s) 67, 1030, 1102
Fsp4HI GCNGC 5 cut(s) 232, 246, 249, 280, 954
FspBI CTAG 4 cut(s) 167, 921, 972, 995
GlaI GCGC 3 cut(s) 26, 354, 390
GluI GCNGC 5 cut(s) 232, 246, 249, 280, 954
HaeII RGCGCY 2 cut(s) 28, 392
HaeIII GGCC 6 cut(s) 5, 94, 751, 1276, 1285, 1340
HhaI GCGC 3 cut(s) 27, 355, 391
Hin1I GRCGYC 1 cut(s) 25
Hin1II CATG 6 cut(s) 100, 203, 541, 551, 598, 1191
Hin6I GCGC 3 cut(s) 25, 353, 389
HinP1I GCGC 3 cut(s) 25, 353, 389
HincII GTYRAC 1 cut(s) 567
HindII GTYRAC 1 cut(s) 567
HinfI GANTC 4 cut(s) 154, 805, 856, 878
HpaI GTTAAC 1 cut(s) 567
HphI GGTGA 3 cut(s) 281, 704, 791
Hpy166II GTNNAC 2 cut(s) 530, 567
Hpy188I TCNGA 4 cut(s) 62, 852, 1032, 1359
Hpy188III TCNNGA 9 cut(s) 167, 256, 612, 641, 728, 802, 939, 995, 1120
Hpy8I GTNNAC 2 cut(s) 530, 567
Hpy99I CGWCG 2 cut(s) 239, 257
HpyAV CCTTC 3 cut(s) 927, 1053, 1305
HpyCH4III ACNGT 2 cut(s) 269, 1175
HpyCH4V TGCA 8 cut(s) 361, 382, 428, 785, 831, 983, 1079, 1384
HpyF10VI GCNNNNNNNGC 5 cut(s) 350, 388, 557, 950, 1282
HpyF3I CTNAG 3 cut(s) 59, 297, 1305
Hsp92I GRCGYC 1 cut(s) 25
Hsp92II CATG 6 cut(s) 100, 203, 541, 551, 598, 1191
HspAI GCGC 3 cut(s) 25, 353, 389
KasI GGCGCC 1 cut(s) 24
Ksp22I TGATCA 1 cut(s) 1108
KspAI GTTAAC 1 cut(s) 567
Kzo9I GATC 6 cut(s) 202, 370, 643, 1108, 1225, 1267
LguI GCTCTTC 1 cut(s) 756
Lsp1109I GCAGC 3 cut(s) 218, 291, 940
LweI GCATC 7 cut(s) 155, 228, 673, 772, 883, 1088, 1385
MaeI CTAG 4 cut(s) 167, 921, 972, 995
MaeIII GTNAC 4 cut(s) 328, 436, 967, 987
MalI GATC 6 cut(s) 204, 372, 645, 1110, 1227, 1269
MboI GATC 6 cut(s) 202, 370, 643, 1108, 1225, 1267
MfeI CAATTG 2 cut(s) 873, 1017
MhlI GDGCHC 3 cut(s) 67, 1030, 1102
MlsI TGGCCA 1 cut(s) 1285
MluNI TGGCCA 1 cut(s) 1285
Mly113I GGCGCC 1 cut(s) 25
MlyI GAGTC 2 cut(s) 799, 850
MmeI TCCRAC 2 cut(s) 159, 182
Mox20I TGGCCA 1 cut(s) 1285
MscI TGGCCA 1 cut(s) 1285
MseI TTAA 4 cut(s) 125, 407, 455, 566
Msp20I TGGCCA 1 cut(s) 1285
MspA1I CMGCKG 1 cut(s) 231
MspR9I CCNGG 2 cut(s) 450, 562
MunI CAATTG 2 cut(s) 873, 1017
Mva1269I GAATGC 1 cut(s) 1344
MvaI CCWGG 2 cut(s) 450, 562
MwoI GCNNNNNNNGC 5 cut(s) 350, 388, 557, 950, 1282
NarI GGCGCC 1 cut(s) 25
NdeI CATATG 2 cut(s) 700, 1056
NdeII GATC 6 cut(s) 202, 370, 643, 1108, 1225, 1267
NlaIII CATG 6 cut(s) 100, 203, 541, 551, 598, 1191
NlaIV GGNNCC 3 cut(s) 26, 670, 938
NmeAIII GCCGAG 1 cut(s) 195
PaqCI CACCTGC 1 cut(s) 1246
PciSI GCTCTTC 1 cut(s) 756
PctI GAATGC 1 cut(s) 1344
PfeI GAWTC 2 cut(s) 154, 878
Pfl23II CGTACG 1 cut(s) 840
PflMI CCANNNNNTGG 1 cut(s) 524
PkrI GCNGC 5 cut(s) 233, 247, 250, 281, 955
PleI GAGTC 2 cut(s) 799, 850
PluTI GGCGCC 1 cut(s) 28
PpsI GAGTC 2 cut(s) 799, 850
PpuMI RGGWCCY 1 cut(s) 936
Psp124BI GAGCTC 1 cut(s) 67
Psp5II RGGWCCY 1 cut(s) 936
Psp6I CCWGG 2 cut(s) 448, 560
PspGI CCWGG 2 cut(s) 448, 560
PspLI CGTACG 1 cut(s) 840
PspN4I GGNNCC 3 cut(s) 26, 670, 938
PspPI GGNCC 7 cut(s) 4, 93, 446, 669, 749, 936, 1339
PspPPI RGGWCCY 1 cut(s) 936
PsrI GAACNNNNNNTAC 2 cut(s) 564, 596
PstI CTGCAG 1 cut(s) 430
PstNI CAGNNNCTG 1 cut(s) 434
PvuII CAGCTG 1 cut(s) 231
RsaI GTAC 7 cut(s) 184, 505, 531, 627, 660, 842, 1165
RsaNI GTAC 7 cut(s) 183, 504, 530, 626, 659, 841, 1164
SacI GAGCTC 1 cut(s) 67
SapI GCTCTTC 1 cut(s) 756
SaqAI TTAA 4 cut(s) 125, 407, 455, 566
SatI GCNGC 5 cut(s) 232, 246, 249, 280, 954
Sau3AI GATC 6 cut(s) 202, 370, 643, 1108, 1225, 1267
Sau96I GGNCC 7 cut(s) 4, 93, 446, 669, 749, 936, 1339
SchI GAGTC 2 cut(s) 799, 850
ScrFI CCNGG 2 cut(s) 450, 562
SduI GDGCHC 3 cut(s) 67, 1030, 1102
SfaNI GCATC 7 cut(s) 155, 228, 673, 772, 883, 1088, 1385
SfcI CTRYAG 3 cut(s) 426, 756, 1394
SfiI GGCCNNNNNGGCC 1 cut(s) 1282
SfoI GGCGCC 1 cut(s) 26
SinI GGWCC 3 cut(s) 446, 669, 936
SmlI CTYRAG 2 cut(s) 733, 858
SmoI CTYRAG 2 cut(s) 733, 858
SpeI ACTAGT 2 cut(s) 920, 971
SsiI CCGC 7 cut(s) 15, 144, 246, 249, 481, 1241, 1342
SspDI GGCGCC 1 cut(s) 24
SspI AATATT 1 cut(s) 889
SspMI CTAG 4 cut(s) 167, 921, 972, 995
SstI GAGCTC 1 cut(s) 67
StyD4I CCNGG 2 cut(s) 448, 560
StyI CCWWGG 2 cut(s) 89, 1277
TaaI ACNGT 2 cut(s) 269, 1175
TaqI TCGA 2 cut(s) 222, 803
TaqII GACCGA 1 cut(s) 1314
TatI WGTACW 4 cut(s) 529, 625, 658, 1163
TauI GCSGC 2 cut(s) 248, 251
TfiI GAWTC 2 cut(s) 154, 878
Tru1I TTAA 4 cut(s) 125, 407, 455, 566
Tru9I TTAA 4 cut(s) 125, 407, 455, 566
TscAI CASTG 2 cut(s) 990, 1309
TseI GCWGC 3 cut(s) 231, 279, 953
TspDTI ATGAA 4 cut(s) 583, 827, 1260, 1337
TspGWI ACGGA 1 cut(s) 177
TspRI CASTG 2 cut(s) 990, 1309
Van91I CCANNNNNTGG 1 cut(s) 524
VpaK11BI GGWCC 3 cut(s) 446, 669, 936
XapI RAATTY 2 cut(s) 273, 797
XbaI TCTAGA 2 cut(s) 166, 994
XspI CTAG 4 cut(s) 167, 921, 972, 995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.