Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007964

Physical Location & Seq

Genomic Coordinates Forward (+)

42956609 .. 42958791

Gene Structure 2183 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57578

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGTTTTTACTTGGTTACTTTTATCTAATTTCGAGCCTTCACCATGTCAAGGCAGATTTGCTTGCTCAATATGGAGGTGTTGCTCCCAAAATGGCAGAAGAAGCGCACTTGCAAGTGATTGATCGGGTTGTGCAAGAAGCGTTCGACAAAGCTAATTTAACCGAGAGAGATTTGTCTGCAGTTGCTGTTACCATTGGTCCTGGTTTAAGCCTTTGTCTTCGTGTTGGTGTGCGGAAAGCTCGTAAAATTGCTGGTACTTTTAGCTTACCGATTACTGGTGTACATCACAAGGAGGCTCATGCTCTTGTCGCCAGTGTACTCATCCTTGCTCGTGATCTTGGTCATTATGTACAACTTGGGACCACAATAGATGATGCTATTGGTGAGGCATATGACAAGATAGCAAAATGGCTTGGTCTTGACTTGAGGAGAAGTGGTGGGCCAGCTATAGAAGAGCTTGCCCGAGAGGGTGATGCAAAATCAATCAAATTCTCGACTCCAATGAAACAACATAAAGATTGCAACTTCTCGTACGCTGGTCTGATGACTCAAGTGAGGCTGGCAATTAATCTAAAAATATTAATGCTACAATTCCTGTTTCTTCAGCAACTAGCGAAGATAGAAGGTCTCAAGCTGATATTGCTGCCTCTTTTCAGGTTACTAGTGTATATCTGTGTCTTTCTTCTTGTCAGTTTGATCAAATGTTTGCCTTGTTCAGGTTCCGACTTTATCTATTCTATAACTTCTGTGACTTTGAGGTTGTCCCTTGTGCAGAGAGTTGCAGTATTACATCTGGAAGAAAGGTGTGAACGAGCAATTGAATGGGCTTTGAAGATTGAACCTTCTGTAAAACATATGGTGTGTAAACTGCGATTTTTTATTCTGTATGCTCCAACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000408 GO:0002949 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016020 GO:0016070 GO:0019866 GO:0022414 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0070525 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M22

Protein Analysis

299

Amino Acids

33.33

Weight (kDa)

9.1

Isoelectric Point (pI)

38.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TsaD	PF00814	11 - 189	2.4e-42	tRNA N6-adenosine threonylcarbamoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45270
fragaria_vesca	FvH4_7g11490 FvH4_7g11490 FvH4_7g11490
malus_domestica	MD02G1206900.v1.1
prunus_persica	Prupe.2G143300_v2.0.a1
pyrus_communis	pycom02g16910
rosa_chinensis	RchiOBHm_Chr1g0349791 RchiOBHm_Chr1g0349801 RchiOBHm_Chr1g0349851 RchiOBHm_Chr1g0349931
rosa_laevigata	RLG00000028515
rosa_multiflora	Rmu_sc0000778.1_g000003 Rmu_sc0005220.1_g000015 Rmu_sc0007377.1_g000005
rosa_roxburghii	Rroxscaffold_4G00305270
rosa_rugosa	Rorug01G0207000 Rorug01G0207000
rosa_samantha	Rh1AG223600 Rh1BG190800 Rh1CG208400
rosa_wichuraiana	Rw0G007620 Rw1G019050 Rw1G019060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	232
AcsI	RAATTY	1 cut(s)	488
AcuI	CTGAAG	1 cut(s)	587
AfaI	GTAC	5 cut(s)	256, 282, 318, 351, 533
AfiI	CCNNNNNNNGG	3 cut(s)	49, 275, 716
AgsI	TTSAA	3 cut(s)	821, 832, 839
AhlI	ACTAGT	1 cut(s)	661
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	6 cut(s)	152, 239, 264, 446, 457, 634
AluI	AGCT	6 cut(s)	152, 239, 264, 446, 457, 634
Alw26I	GTCTC	1 cut(s)	632
AlwNI	CAGNNNCTG	1 cut(s)	185
Ama87I	CYCGRG	1 cut(s)	462
AoxI	GGCC	1 cut(s)	440
ApeKI	GCWGC	1 cut(s)	643
ApoI	RAATTY	1 cut(s)	488
AseI	ATTAAT	2 cut(s)	567, 581
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	3 cut(s)	197, 360, 440
AsuHPI	GGTGA	3 cut(s)	32, 395, 482
AvaI	CYCGRG	1 cut(s)	462
AvaII	GGWCC	2 cut(s)	197, 360
BauI	CACGAG	1 cut(s)	330
BbsI	GAAGAC	1 cut(s)	209
BbvI	GCAGC	1 cut(s)	630
BciT130I	CCWGG	1 cut(s)	201
BclI	TGATCA	1 cut(s)	696
BcoDI	GTCTC	1 cut(s)	632
BcuI	ACTAGT	1 cut(s)	661
BfaI	CTAG	2 cut(s)	611, 662
BfmI	CTRYAG	2 cut(s)	177, 447
BisI	GCNGC	1 cut(s)	644
BlsI	GCNGC	1 cut(s)	645
Bme1390I	CCNGG	1 cut(s)	201
Bme18I	GGWCC	2 cut(s)	197, 360
BmeT110I	CYCGRG	1 cut(s)	462
BmgT120I	GGNCC	3 cut(s)	197, 360, 440
BmiI	GGNNCC	2 cut(s)	361, 721
BmrFI	CCNGG	1 cut(s)	201
BmsI	GCATC	2 cut(s)	364, 463
BpiI	GAAGAC	1 cut(s)	209
BpuEI	CTTGAG	3 cut(s)	445, 534, 614
BsaI	GGTCTC	1 cut(s)	632
BsaXI	ACNNNNNCTCC	2 cut(s)	421, 451
Bsc4I	CCNNNNNNNGG	3 cut(s)	49, 275, 716
Bse1I	ACTGG	2 cut(s)	280, 312
BseBI	CCWGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	321
BseLI	CCNNNNNNNGG	3 cut(s)	49, 275, 716
BseNI	ACTGG	2 cut(s)	280, 312
BseRI	GAGGAG	1 cut(s)	442
BseXI	GCAGC	1 cut(s)	630
BsgI	GTGCAG	1 cut(s)	791
BshFI	GGCC	1 cut(s)	442
BsiHKCI	CYCGRG	1 cut(s)	462
BsiWI	CGTACG	1 cut(s)	531
BslFI	GGGAC	2 cut(s)	373, 748
BslI	CCNNNNNNNGG	3 cut(s)	49, 275, 716
BsmAI	GTCTC	1 cut(s)	632
BsmFI	GGGAC	2 cut(s)	373, 748
BsnI	GGCC	1 cut(s)	442
Bso31I	GGTCTC	1 cut(s)	632
BsoBI	CYCGRG	1 cut(s)	462
Bsp1407I	TGTACA	2 cut(s)	280, 349
Bsp143I	GATC	3 cut(s)	121, 334, 696
BspACI	CCGC	1 cut(s)	232
BspANI	GGCC	1 cut(s)	442
BspLI	GGNNCC	2 cut(s)	361, 721
BspMAI	CTGCAG	1 cut(s)	181
BspQI	GCTCTTC	1 cut(s)	447
BspTNI	GGTCTC	1 cut(s)	632
BsrGI	TGTACA	2 cut(s)	280, 349
BsrI	ACTGG	2 cut(s)	280, 312
BssMI	GATC	3 cut(s)	121, 334, 696
BssSI	CACGAG	1 cut(s)	330
Bst2BI	CACGAG	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	201
Bst6I	CTCTTC	1 cut(s)	447
BstAUI	TGTACA	2 cut(s)	280, 349
BstC8I	GCNNGC	4 cut(s)	63, 444, 459, 561
BstENI	CCTNNNNNAGG	1 cut(s)	714
BstF5I	GGATG	1 cut(s)	321
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	3 cut(s)	124, 337, 699
BstMAI	GTCTC	1 cut(s)	632
BstMBI	GATC	3 cut(s)	121, 334, 696
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 308, 640
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	199
BstSFI	CTRYAG	2 cut(s)	177, 447
BstV1I	GCAGC	1 cut(s)	630
BstV2I	GAAGAC	1 cut(s)	209
BsuRI	GGCC	1 cut(s)	442
BtsCI	GGATG	1 cut(s)	321
BtsIMutI	CAGTG	1 cut(s)	319
Cac8I	GCNNGC	4 cut(s)	63, 444, 459, 561
CaiI	CAGNNNCTG	1 cut(s)	185
CfoI	GCGC	1 cut(s)	106
Cfr13I	GGNCC	3 cut(s)	197, 360, 440
Csp6I	GTAC	5 cut(s)	255, 281, 317, 350, 532
CviAII	CATG	2 cut(s)	44, 299
CviQI	GTAC	5 cut(s)	255, 281, 317, 350, 532
DpnI	GATC	3 cut(s)	123, 336, 698
DpnII	GATC	3 cut(s)	121, 334, 696
Eam1104I	CTCTTC	1 cut(s)	447
EarI	CTCTTC	1 cut(s)	447
Eco31I	GGTCTC	1 cut(s)	632
Eco47I	GGWCC	2 cut(s)	197, 360
Eco57I	CTGAAG	1 cut(s)	587
Eco88I	CYCGRG	1 cut(s)	462
EcoNI	CCTNNNNNAGG	1 cut(s)	714
EcoRII	CCWGG	1 cut(s)	199
FaeI	CATG	2 cut(s)	47, 302
FaqI	GGGAC	2 cut(s)	373, 748
FatI	CATG	2 cut(s)	43, 298
FauNDI	CATATG	2 cut(s)	391, 855
FbaI	TGATCA	1 cut(s)	696
Fnu4HI	GCNGC	1 cut(s)	644
FokI	GGATG	1 cut(s)	308
Fsp4HI	GCNGC	1 cut(s)	644
FspBI	CTAG	2 cut(s)	611, 662
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	1 cut(s)	644
HaeIII	GGCC	1 cut(s)	442
HhaI	GCGC	1 cut(s)	106
Hin1II	CATG	2 cut(s)	47, 302
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HinfI	GANTC	2 cut(s)	496, 547
HphI	GGTGA	3 cut(s)	32, 395, 482
Hpy166II	GTNNAC	4 cut(s)	281, 317, 809, 866
Hpy188I	TCNGA	2 cut(s)	543, 724
Hpy188III	TCNNGA	4 cut(s)	332, 419, 493, 794
Hpy8I	GTNNAC	4 cut(s)	281, 317, 809, 866
HpyAV	CCTTC	3 cut(s)	47, 617, 852
HpyCH4V	TGCA	7 cut(s)	112, 133, 179, 476, 522, 772, 782
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 308, 640
Hsp92II	CATG	2 cut(s)	47, 302
HspAI	GCGC	1 cut(s)	104
Ksp22I	TGATCA	1 cut(s)	696
Kzo9I	GATC	3 cut(s)	121, 334, 696
LguI	GCTCTTC	1 cut(s)	447
LmnI	GCTCC	2 cut(s)	88, 895
Lsp1109I	GCAGC	1 cut(s)	630
LweI	GCATC	2 cut(s)	364, 463
MaeI	CTAG	2 cut(s)	611, 662
MaeIII	GTNAC	4 cut(s)	14, 187, 657, 748
MalI	GATC	3 cut(s)	123, 336, 698
MboI	GATC	3 cut(s)	121, 334, 696
MboII	GAAGA	8 cut(s)	110, 209, 464, 593, 628, 674, 809, 844
MfeI	CAATTG	1 cut(s)	816
MluCI	AATT	7 cut(s)	27, 154, 246, 488, 564, 590, 816
MlyI	GAGTC	2 cut(s)	490, 541
MmeI	TCCRAC	1 cut(s)	747
MnlI	CCTC	8 cut(s)	68, 286, 379, 420, 460, 549, 657, 750
MseI	TTAA	4 cut(s)	158, 206, 567, 581
MspR9I	CCNGG	1 cut(s)	201
MunI	CAATTG	1 cut(s)	816
MvaI	CCWGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	3 cut(s)	101, 308, 640
NdeI	CATATG	2 cut(s)	391, 855
NdeII	GATC	3 cut(s)	121, 334, 696
NlaIII	CATG	2 cut(s)	47, 302
NlaIV	GGNNCC	2 cut(s)	361, 721
NmuCI	GTSAC	1 cut(s)	748
PciSI	GCTCTTC	1 cut(s)	447
Pfl23II	CGTACG	1 cut(s)	531
PkrI	GCNGC	1 cut(s)	645
PleI	GAGTC	2 cut(s)	490, 541
PpsI	GAGTC	2 cut(s)	490, 541
PshBI	ATTAAT	2 cut(s)	567, 581
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspLI	CGTACG	1 cut(s)	531
PspN4I	GGNNCC	2 cut(s)	361, 721
PspPI	GGNCC	3 cut(s)	197, 360, 440
PstI	CTGCAG	1 cut(s)	181
PstNI	CAGNNNCTG	1 cut(s)	185
RsaI	GTAC	5 cut(s)	256, 282, 318, 351, 533
RsaNI	GTAC	5 cut(s)	255, 281, 317, 350, 532
SapI	GCTCTTC	1 cut(s)	447
SaqAI	TTAA	4 cut(s)	158, 206, 567, 581
SatI	GCNGC	1 cut(s)	644
Sau3AI	GATC	3 cut(s)	121, 334, 696
Sau96I	GGNCC	3 cut(s)	197, 360, 440
SchI	GAGTC	2 cut(s)	490, 541
ScrFI	CCNGG	1 cut(s)	201
SfaNI	GCATC	2 cut(s)	364, 463
SfcI	CTRYAG	2 cut(s)	177, 447
SinI	GGWCC	2 cut(s)	197, 360
SmlI	CTYRAG	3 cut(s)	424, 549, 629
SmoI	CTYRAG	3 cut(s)	424, 549, 629
SpeI	ACTAGT	1 cut(s)	661
Sse9I	AATT	7 cut(s)	27, 154, 246, 488, 564, 590, 816
SsiI	CCGC	1 cut(s)	232
SspI	AATATT	1 cut(s)	579
SspMI	CTAG	2 cut(s)	611, 662
StyD4I	CCNGG	1 cut(s)	199
TaqI	TCGA	3 cut(s)	32, 144, 494
TasI	AATT	7 cut(s)	27, 154, 246, 488, 564, 590, 816
TatI	WGTACW	3 cut(s)	280, 316, 349
Tru1I	TTAA	4 cut(s)	158, 206, 567, 581
Tru9I	TTAA	4 cut(s)	158, 206, 567, 581
TscAI	CASTG	1 cut(s)	319
TseFI	GTSAC	1 cut(s)	748
TseI	GCWGC	1 cut(s)	643
Tsp45I	GTSAC	1 cut(s)	748
TspDTI	ATGAA	1 cut(s)	518
TspRI	CASTG	1 cut(s)	319
VpaK11BI	GGWCC	2 cut(s)	197, 360
VspI	ATTAAT	2 cut(s)	567, 581
XagI	CCTNNNNNAGG	1 cut(s)	714
XapI	RAATTY	1 cut(s)	488
XspI	CTAG	2 cut(s)	611, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.