Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007964

Physical Location & Seq

Genomic Coordinates Forward (+)

10636031 .. 10640442

Gene Structure 4412 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g11490.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCAGAAGAAGCGCACTTGCAGGTGATTGATCAGGTTGTGCAAGAAGCGCTCGACAAAGCTAATTTAAGCGAGAGAGACTTGTCTGCAGTTGCAGTTACCATTGGTCCTGGTTTAAGCCTTTGTCTTCGTGTTGGTGTGCGGAAAGCTCGTAAAATTGCTGGTACTTTTAGCTTACCAATTATTGGTGTTCATCACATGGAGGCTCATGCTCTTGTAGCCAGGTTAACTGAACAAGAACTACAATTTCCTTTCATGGCCCTTCTTATTTCAGGAGGACACAATGTACTCATTCTTGCTCGTGATCTTGGTCATTACGTACAATTAGGGACCACGATAGATGATGCTATTGGTGAGGCTTATGATAAGATAGCAAAATGGCTTGGCCTTGACTTGAGGAGAAGTGGTGGGCCAGCTATAGAAGAACTTGCCCGAGAGGGTGATGCAAAATCAATTAAATTATCGACTCCAATGAAACAACATAAAGATTGCAACTTCTCGTATGCTGGTCTGAAGACTCAAGTGAGGCTGGCAATTGAATCTAAAAATATTAATGCTACAATTCCTGTTTCTTCAGCAACTAGCGAAGATAGAAAGTCTCGAGCTGATATTGCTGCCTCTTTTCAGAGAGTTGCCGTGTTACATTTAGAAGAAAGGTGCGAACGAGCAATTGAATGGGCTTTGAAGATTGAACCTTCCGTAAAACATATGGTTGTGTCTGGTGGTGTTGCATCAAATCAATATGTTCGGGCTCGACTTGATCAGATTGTCACCAAAAACAACTTGCAACTTGTATGCCCTCCTCCCAGCCTTTGTACAGACAACGGTGTAATGGTGGCATGGACTGGCATTGAGAACTTTTGTATGGGAAGATTTGATCCACCACCACCTGCAGATGAACCTGAAGATATTGAGTTTGATCTGCGACCACGATGGCCATTGGGGGAAGAATACGCTGAGGGAAGGAGTGAAGCTCGGTCAATGAGAACGGCTCGCATTCATCCCTCTCTGACATCTCTCGTCCAAGCATCTTTGCAACAACAACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000408 GO:0002949 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0007275 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016020 GO:0016070 GO:0019866 GO:0022414 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0070525 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M22

Protein Analysis

350

Amino Acids

38.38

Weight (kDa)

6.09

Isoelectric Point (pI)

54.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TsaD	PF00814	1 - 215	2.9e-49	tRNA N6-adenosine threonylcarbamoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0007964)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45270
fragaria_vesca	FvH4_7g11490 FvH4_7g11490 FvH4_7g11490
malus_domestica	MD02G1206900.v1.1
prunus_persica	Prupe.2G143300_v2.0.a1
pyrus_communis	pycom02g16910
rosa_chinensis	RchiOBHm_Chr1g0349791 RchiOBHm_Chr1g0349801 RchiOBHm_Chr1g0349851 RchiOBHm_Chr1g0349931
rosa_laevigata	RLG00000028515
rosa_multiflora	Rmu_sc0000778.1_g000003 Rmu_sc0005220.1_g000015 Rmu_sc0007377.1_g000005
rosa_roxburghii	Rroxscaffold_4G00305270
rosa_rugosa	Rorug01G0207000 Rorug01G0207000
rosa_samantha	Rh1AG223600 Rh1BG190800 Rh1CG208400
rosa_wichuraiana	Rw0G007620 Rw1G019050 Rw1G019060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	13, 898
Acc36I	ACCTGC	2 cut(s)	13, 898
AccB7I	CCANNNNNTGG	1 cut(s)	185
AciI	CCGC	1 cut(s)	142
AclWI	GGATC	1 cut(s)	872
AcoI	YGGCCR	1 cut(s)	935
AcuI	CTGAAG	3 cut(s)	533, 558, 924
AfaI	GTAC	4 cut(s)	166, 288, 321, 817
AfeI	AGCGCT	1 cut(s)	51
AfiI	CCNNNNNNNGG	1 cut(s)	185
AgsI	TTSAA	4 cut(s)	539, 674, 685, 692
AjnI	CCWGG	2 cut(s)	109, 221
AluBI	AGCT	6 cut(s)	62, 149, 174, 416, 605, 974
AluI	AGCT	6 cut(s)	62, 149, 174, 416, 605, 974
Alw26I	GTCTC	2 cut(s)	72, 603
AlwI	GGATC	1 cut(s)	872
Ama87I	CYCGRG	2 cut(s)	432, 600
Aor51HI	AGCGCT	1 cut(s)	51
AoxI	GGCC	4 cut(s)	258, 385, 410, 935
ApeKI	GCWGC	1 cut(s)	614
AseI	ATTAAT	1 cut(s)	552
AspLEI	GCGC	2 cut(s)	16, 52
AspS9I	GGNCC	4 cut(s)	107, 259, 330, 410
AsuHPI	GGTGA	4 cut(s)	37, 365, 452, 763
AvaI	CYCGRG	2 cut(s)	432, 600
AvaII	GGWCC	2 cut(s)	107, 330
BalI	TGGCCA	1 cut(s)	937
BanII	GRGCYC	1 cut(s)	754
BauI	CACGAG	1 cut(s)	300
BbsI	GAAGAC	2 cut(s)	119, 521
BbvCI	CCTCAGC	1 cut(s)	957
BbvI	GCAGC	1 cut(s)	601
BccI	CCATC	1 cut(s)	927
BceAI	ACGGC	2 cut(s)	620, 1005
BciT130I	CCWGG	2 cut(s)	111, 223
BclI	TGATCA	2 cut(s)	31, 760
BcoDI	GTCTC	2 cut(s)	72, 603
BfaI	CTAG	1 cut(s)	582
BfmI	CTRYAG	3 cut(s)	87, 417, 891
BfoI	RGCGCY	1 cut(s)	53
BfuAI	ACCTGC	2 cut(s)	13, 898
BisI	GCNGC	1 cut(s)	615
BlsI	GCNGC	1 cut(s)	616
Bme1390I	CCNGG	2 cut(s)	111, 223
Bme18I	GGWCC	2 cut(s)	107, 330
BmeT110I	CYCGRG	2 cut(s)	432, 600
BmgT120I	GGNCC	4 cut(s)	107, 259, 330, 410
BmiI	GGNNCC	1 cut(s)	331
BmrFI	CCNGG	2 cut(s)	111, 223
BmsI	GCATC	4 cut(s)	334, 433, 740, 1037
BpiI	GAAGAC	2 cut(s)	119, 521
BplI	GAGNNNNNCTC	4 cut(s)	958, 990, 976, 1008
Bpu10I	CCTNAGC	1 cut(s)	957
BpuEI	CTTGAG	2 cut(s)	415, 504
BsaAI	YACGTR	1 cut(s)	319
BsaXI	ACNNNNNCTCC	2 cut(s)	391, 421
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse1I	ACTGG	1 cut(s)	850
BseBI	CCWGG	2 cut(s)	111, 223
BseGI	GGATG	1 cut(s)	1000
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseMII	CTCAG	1 cut(s)	948
BseNI	ACTGG	1 cut(s)	850
BseRI	GAGGAG	2 cut(s)	412, 792
BseXI	GCAGC	1 cut(s)	601
BseYI	CCCAGC	1 cut(s)	806
BshFI	GGCC	4 cut(s)	260, 387, 412, 937
BsiHKCI	CYCGRG	2 cut(s)	432, 600
BslFI	GGGAC	1 cut(s)	343
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	2 cut(s)	72, 603
BsmFI	GGGAC	1 cut(s)	343
BsmI	GAATGC	1 cut(s)	996
BsnI	GGCC	4 cut(s)	260, 387, 412, 937
BsoBI	CYCGRG	2 cut(s)	432, 600
Bsp1286I	GDGCHC	1 cut(s)	754
Bsp1407I	TGTACA	1 cut(s)	815
Bsp143I	GATC	5 cut(s)	31, 304, 760, 877, 919
BspACI	CCGC	1 cut(s)	142
BspANI	GGCC	4 cut(s)	260, 387, 412, 937
BspCNI	CTCAG	1 cut(s)	949
BspLI	GGNNCC	1 cut(s)	331
BspMAI	CTGCAG	2 cut(s)	91, 895
BspMI	ACCTGC	2 cut(s)	13, 898
BspPI	GGATC	1 cut(s)	872
BsrGI	TGTACA	1 cut(s)	815
BsrI	ACTGG	1 cut(s)	850
BssMI	GATC	5 cut(s)	31, 304, 760, 877, 919
BssSI	CACGAG	1 cut(s)	300
Bst2BI	CACGAG	1 cut(s)	300
Bst2UI	CCWGG	2 cut(s)	111, 223
Bst4CI	ACNGT	1 cut(s)	827
BstAUI	TGTACA	1 cut(s)	815
BstBAI	YACGTR	1 cut(s)	319
BstC8I	GCNNGC	3 cut(s)	414, 531, 994
BstDEI	CTNAG	1 cut(s)	957
BstF5I	GGATG	1 cut(s)	1000
BstH2I	RGCGCY	1 cut(s)	53
BstHHI	GCGC	2 cut(s)	16, 52
BstKTI	GATC	5 cut(s)	34, 307, 763, 880, 922
BstMAI	GTCTC	2 cut(s)	72, 603
BstMBI	GATC	5 cut(s)	31, 304, 760, 877, 919
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 49, 218, 611
BstNI	CCWGG	2 cut(s)	111, 223
BstSCI	CCNGG	2 cut(s)	109, 221
BstSFI	CTRYAG	3 cut(s)	87, 417, 891
BstSNI	TACGTA	1 cut(s)	319
BstV1I	GCAGC	1 cut(s)	601
BstV2I	GAAGAC	2 cut(s)	119, 521
BsuRI	GGCC	4 cut(s)	260, 387, 412, 937
BtsCI	GGATG	1 cut(s)	1000
BveI	ACCTGC	2 cut(s)	13, 898
Cac8I	GCNNGC	3 cut(s)	414, 531, 994
CfoI	GCGC	2 cut(s)	16, 52
Cfr13I	GGNCC	4 cut(s)	107, 259, 330, 410
Csp6I	GTAC	4 cut(s)	165, 287, 320, 816
CviAII	CATG	4 cut(s)	199, 209, 256, 840
CviQI	GTAC	4 cut(s)	165, 287, 320, 816
DdeI	CTNAG	1 cut(s)	957
DpnI	GATC	5 cut(s)	33, 306, 762, 879, 921
DpnII	GATC	5 cut(s)	31, 304, 760, 877, 919
EaeI	YGGCCR	1 cut(s)	935
Eco105I	TACGTA	1 cut(s)	319
Eco24I	GRGCYC	1 cut(s)	754
Eco47I	GGWCC	2 cut(s)	107, 330
Eco47III	AGCGCT	1 cut(s)	51
Eco57I	CTGAAG	3 cut(s)	533, 558, 924
Eco88I	CYCGRG	2 cut(s)	432, 600
EcoRII	CCWGG	2 cut(s)	109, 221
EcoT38I	GRGCYC	1 cut(s)	754
FaeI	CATG	4 cut(s)	202, 212, 259, 843
FaqI	GGGAC	1 cut(s)	343
FatI	CATG	4 cut(s)	198, 208, 255, 839
FauNDI	CATATG	1 cut(s)	708
FbaI	TGATCA	2 cut(s)	31, 760
Fnu4HI	GCNGC	1 cut(s)	615
FokI	GGATG	1 cut(s)	987
FriOI	GRGCYC	1 cut(s)	754
Fsp4HI	GCNGC	1 cut(s)	615
FspBI	CTAG	1 cut(s)	582
GlaI	GCGC	2 cut(s)	15, 51
GluI	GCNGC	1 cut(s)	615
GsaI	CCCAGC	1 cut(s)	810
HaeII	RGCGCY	1 cut(s)	53
HaeIII	GGCC	4 cut(s)	260, 387, 412, 937
HhaI	GCGC	2 cut(s)	16, 52
Hin1II	CATG	4 cut(s)	202, 212, 259, 843
Hin6I	GCGC	2 cut(s)	14, 50
HinP1I	GCGC	2 cut(s)	14, 50
HincII	GTYRAC	1 cut(s)	228
HindII	GTYRAC	1 cut(s)	228
HinfI	GANTC	3 cut(s)	466, 517, 539
HpaI	GTTAAC	1 cut(s)	228
HphI	GGTGA	4 cut(s)	37, 365, 452, 763
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	4 cut(s)	513, 627, 765, 1011
Hpy188III	TCNNGA	3 cut(s)	273, 302, 600
Hpy8I	GTNNAC	1 cut(s)	228
HpyAV	CCTTC	3 cut(s)	272, 705, 957
HpyCH4III	ACNGT	1 cut(s)	827
HpyCH4IV	ACGT	1 cut(s)	318
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 49, 218, 611
HpyF3I	CTNAG	1 cut(s)	957
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	4 cut(s)	202, 212, 259, 843
HspAI	GCGC	2 cut(s)	14, 50
Ksp22I	TGATCA	2 cut(s)	31, 760
KspAI	GTTAAC	1 cut(s)	228
Kzo9I	GATC	5 cut(s)	31, 304, 760, 877, 919
Lsp1109I	GCAGC	1 cut(s)	601
LweI	GCATC	4 cut(s)	334, 433, 740, 1037
MaeI	CTAG	1 cut(s)	582
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	3 cut(s)	97, 639, 769
MalI	GATC	5 cut(s)	33, 306, 762, 879, 921
MboI	GATC	5 cut(s)	31, 304, 760, 877, 919
MfeI	CAATTG	2 cut(s)	534, 669
MhlI	GDGCHC	1 cut(s)	754
MlsI	TGGCCA	1 cut(s)	937
MluNI	TGGCCA	1 cut(s)	937
MlyI	GAGTC	2 cut(s)	460, 511
Mox20I	TGGCCA	1 cut(s)	937
MscI	TGGCCA	1 cut(s)	937
MseI	TTAA	5 cut(s)	68, 116, 227, 456, 552
Msp20I	TGGCCA	1 cut(s)	937
MspR9I	CCNGG	2 cut(s)	111, 223
MunI	CAATTG	2 cut(s)	534, 669
Mva1269I	GAATGC	1 cut(s)	996
MvaI	CCWGG	2 cut(s)	111, 223
MwoI	GCNNNNNNNGC	4 cut(s)	11, 49, 218, 611
NdeI	CATATG	1 cut(s)	708
NdeII	GATC	5 cut(s)	31, 304, 760, 877, 919
NlaIII	CATG	4 cut(s)	202, 212, 259, 843
NlaIV	GGNNCC	1 cut(s)	331
NmuCI	GTSAC	1 cut(s)	769
PaeR7I	CTCGAG	1 cut(s)	600
PaqCI	CACCTGC	2 cut(s)	13, 898
PctI	GAATGC	1 cut(s)	996
PfeI	GAWTC	1 cut(s)	539
PflMI	CCANNNNNTGG	1 cut(s)	185
PkrI	GCNGC	1 cut(s)	616
PleI	GAGTC	2 cut(s)	460, 511
PpsI	GAGTC	2 cut(s)	460, 511
Ppu21I	YACGTR	1 cut(s)	319
PshBI	ATTAAT	1 cut(s)	552
Psp6I	CCWGG	2 cut(s)	109, 221
PspFI	CCCAGC	1 cut(s)	806
PspGI	CCWGG	2 cut(s)	109, 221
PspN4I	GGNNCC	1 cut(s)	331
PspPI	GGNCC	4 cut(s)	107, 259, 330, 410
PsrI	GAACNNNNNNTAC	2 cut(s)	225, 257
PstI	CTGCAG	2 cut(s)	91, 895
RsaI	GTAC	4 cut(s)	166, 288, 321, 817
RsaNI	GTAC	4 cut(s)	165, 287, 320, 816
SaqAI	TTAA	5 cut(s)	68, 116, 227, 456, 552
SatI	GCNGC	1 cut(s)	615
Sau3AI	GATC	5 cut(s)	31, 304, 760, 877, 919
Sau96I	GGNCC	4 cut(s)	107, 259, 330, 410
SchI	GAGTC	2 cut(s)	460, 511
ScrFI	CCNGG	2 cut(s)	111, 223
SduI	GDGCHC	1 cut(s)	754
SfaNI	GCATC	4 cut(s)	334, 433, 740, 1037
SfcI	CTRYAG	3 cut(s)	87, 417, 891
Sfr274I	CTCGAG	1 cut(s)	600
SinI	GGWCC	2 cut(s)	107, 330
SlaI	CTCGAG	1 cut(s)	600
SmlI	CTYRAG	3 cut(s)	394, 519, 600
SmoI	CTYRAG	3 cut(s)	394, 519, 600
SnaBI	TACGTA	1 cut(s)	319
SsiI	CCGC	1 cut(s)	142
SspI	AATATT	1 cut(s)	550
SspMI	CTAG	1 cut(s)	582
StyD4I	CCNGG	2 cut(s)	109, 221
TaaI	ACNGT	1 cut(s)	827
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	4 cut(s)	54, 464, 601, 754
TaqII	GACCGA	1 cut(s)	966
TatI	WGTACW	2 cut(s)	286, 815
TfiI	GAWTC	1 cut(s)	539
Tru1I	TTAA	5 cut(s)	68, 116, 227, 456, 552
Tru9I	TTAA	5 cut(s)	68, 116, 227, 456, 552
TseFI	GTSAC	1 cut(s)	769
TseI	GCWGC	1 cut(s)	614
Tsp45I	GTSAC	1 cut(s)	769
TspDTI	ATGAA	5 cut(s)	182, 244, 488, 912, 989
TspGWI	ACGGA	1 cut(s)	688
Van91I	CCANNNNNTGG	1 cut(s)	185
VpaK11BI	GGWCC	2 cut(s)	107, 330
VspI	ATTAAT	1 cut(s)	552
XhoI	CTCGAG	1 cut(s)	600
XspI	CTAG	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.