Rroxscaffold_4G00305270

Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in mitochondrial tRNAs that read codons beginning with adenine. Probably involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37. Involved in mitochondrial genome maintenance

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
25910726 .. 25915493
4768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00305270.1

Sequence Viewer

Length: 1293 bp
ATGTCCTCGCTTCCCATTTCTTCTAAATCAAATTCCTCCAACTTCTCCGCATCAAAGAATCCTACTTTTCTAGACCCAAAAACTCGAACTCCGTATCCCCAACATGATCTTATTGTTCTGGGCATCGAAACCAGCTGTGACGACACCGCCGCCGCCGTCGTGAAAAGCAACGGTGAAATTCTCAGCCAAGTTATTTCTTCTCAGGCAGATTTGCTTGCTCAATATGGGGGTGTTGCTCCCAAAATGGCAGAAGAAGCGCACTTGCAAGTGATTGATCGGGTTGTGCAAGAAGCGCTTGACAAAGCTAATTTAACCGAGAGAGATTTGTCTGCAGTTGCTGTTACCATTGGTCCGGGTTTAAGCCTTTGTCTTCGTGTTGGTGTGCGGAAAGCTCGTAAAATTGCTGGTACTTTTAGCTTACCAATTATTGGTGTACATCACATGGAGGCTCATGCTCTTGTTGCCAGGTTAACTGAACAAGAACTACAATTTCCTTTTATGGCTCTGCTTATTTCAGGAGGACACAATGTACTCATCCTTGCTCGTGATCTTGGTCATTATGTACAACTTGGGACCACAATAGATGATGCTATTGGTGAGGCATATGATAAGATAGCAAAATGGCTTGGTCTTGACTTGAGGAGAAGTGGTGGGCCAGCTGTAGAAGAGCTTGCCCGAGAGGGTGATGCAAAATCAATCAAATTCTCGACTCCAATGAAACAACATAAAGATTGCAACTTCTCGTACGCTGGTCTGAAGACTCAAGTGAGGCTGGCAATTGAATCTAAAAATATTAATGCTACAATTCCTGTTTCTTCAGCAACTAGCCAAGATAGAAGGTCCCGAGCTGATATTGCTGCCTCTTTTCAGAGAGTTGCAGTATTACATCTGGAAGAAAGGTGTGAACGAGCAATTGAATGGGCTTTGAAGATTGAACCTTCTGTAAAACATATGGTTGTGTCTGGTGGTGTTGCATCAAATCAATATGTTCGGGCTCAACTTGATCAGGTTGTCAAGAAAAACAACTTACAACTTGTATGCCCTCCTCCCAGCCTTTGTACAGACAACGGTGTAATGGTGGCATGGACTGGCATTGAGAACTTTTGTATGGGAAGATTTGATCCACCACCACCTGCAGATGAACCTGAAGATATTGAGTTTGATCTGCGGCCAAGGTGGCCATTGGGGGAAGAATACGCTGAGGGAAGGAGTGAAGCTCGGTCAATGAGAACAGCCCGCATTCATCCGTCTCTGACATCTCTCGTCCAAGCATCTTTGCAACAGCAACTATAG

Protein Analysis

430

Amino Acids

46.93

Weight (kDa)

6.28

Isoelectric Point (pI)

54.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TsaD PF00814 59 - 362 2.9e-85 tRNA N6-adenosine threonylcarbamoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1141
Acc36I ACCTGC 1 cut(s) 1141
AccB7I CCANNNNNTGG 1 cut(s) 428
AciI CCGC 7 cut(s) 48, 147, 150, 153, 385, 1168, 1237
AclWI GGATC 1 cut(s) 1115
AcoI YGGCCR 2 cut(s) 1169, 1178
AcsI RAATTY 3 cut(s) 31, 177, 701
AcuI CTGAAG 3 cut(s) 776, 801, 1167
AfaI GTAC 6 cut(s) 409, 435, 531, 564, 746, 1060
AfeI AGCGCT 1 cut(s) 294
AfiI CCNNNNNNNGG 1 cut(s) 428
AgsI TTSAA 4 cut(s) 782, 917, 928, 935
AjnI CCWGG 1 cut(s) 464
AloI GAACNNNNNNTCC 2 cut(s) 79, 111
AluBI AGCT 8 cut(s) 135, 305, 392, 417, 659, 670, 848, 1217
AluI AGCT 8 cut(s) 135, 305, 392, 417, 659, 670, 848, 1217
Alw26I GTCTC 1 cut(s) 1254
AlwI GGATC 1 cut(s) 1115
AlwNI CAGNNNCTG 1 cut(s) 338
Ama87I CYCGRG 2 cut(s) 675, 843
Aor51HI AGCGCT 1 cut(s) 294
AoxI GGCC 3 cut(s) 653, 1169, 1178
ApeKI GCWGC 1 cut(s) 857
ApoI RAATTY 3 cut(s) 31, 177, 701
AseI ATTAAT 1 cut(s) 795
AspLEI GCGC 2 cut(s) 259, 295
AspS9I GGNCC 4 cut(s) 350, 573, 653, 840
AsuC2I CCSGG 1 cut(s) 354
AsuHPI GGTGA 3 cut(s) 185, 608, 695
AvaI CYCGRG 2 cut(s) 675, 843
AvaII GGWCC 3 cut(s) 350, 573, 840
BalI TGGCCA 1 cut(s) 1180
BanII GRGCYC 1 cut(s) 997
BauI CACGAG 1 cut(s) 543
BbsI GAAGAC 2 cut(s) 362, 764
BbvCI CCTCAGC 1 cut(s) 1200
BbvI GCAGC 1 cut(s) 844
BceAI ACGGC 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 466
BciVI GTATCC 1 cut(s) 105
BclI TGATCA 1 cut(s) 1003
BcnI CCSGG 1 cut(s) 354
BcoDI GTCTC 1 cut(s) 1254
BfaI CTAG 2 cut(s) 71, 825
BfmI CTRYAG 4 cut(s) 330, 660, 1134, 1289
BfoI RGCGCY 1 cut(s) 296
BfuAI ACCTGC 1 cut(s) 1141
BfuI GTATCC 1 cut(s) 105
BglI GCCNNNNNGGC 1 cut(s) 1177
BisI GCNGC 4 cut(s) 150, 153, 858, 1169
BlsI GCNGC 4 cut(s) 151, 154, 859, 1170
Bme1390I CCNGG 2 cut(s) 354, 466
Bme18I GGWCC 3 cut(s) 350, 573, 840
BmeT110I CYCGRG 2 cut(s) 675, 843
BmgT120I GGNCC 4 cut(s) 350, 573, 653, 840
BmiI GGNNCC 2 cut(s) 574, 842
BmrFI CCNGG 2 cut(s) 354, 466
BmsI GCATC 6 cut(s) 59, 132, 577, 676, 983, 1280
BpiI GAAGAC 2 cut(s) 362, 764
BplI GAGNNNNNCTC 2 cut(s) 1201, 1233
Bpu10I CCTNAGC 1 cut(s) 1200
BpuEI CTTGAG 2 cut(s) 658, 747
BpuMI CCSGG 1 cut(s) 354
BsaJI CCNNGG 1 cut(s) 1172
BsaXI ACNNNNNCTCC 4 cut(s) 73, 103, 634, 664
Bsc4I CCNNNNNNNGG 1 cut(s) 428
Bse1I ACTGG 1 cut(s) 1093
BseBI CCWGG 1 cut(s) 466
BseDI CCNNGG 1 cut(s) 1172
BseGI GGATG 2 cut(s) 534, 1243
BseLI CCNNNNNNNGG 1 cut(s) 428
BseMII CTCAG 3 cut(s) 196, 215, 1191
BseNI ACTGG 1 cut(s) 1093
BseRI GAGGAG 2 cut(s) 655, 1035
BseXI GCAGC 1 cut(s) 844
BseYI CCCAGC 1 cut(s) 1049
BshFI GGCC 3 cut(s) 655, 1171, 1180
BsiHKCI CYCGRG 2 cut(s) 675, 843
BsiSI CCGG 1 cut(s) 353
BsiWI CGTACG 1 cut(s) 744
BslFI GGGAC 2 cut(s) 586, 826
BslI CCNNNNNNNGG 1 cut(s) 428
BsmAI GTCTC 1 cut(s) 1254
BsmBI CGTCTC 1 cut(s) 1254
BsmFI GGGAC 2 cut(s) 586, 826
BsmI GAATGC 1 cut(s) 1239
BsnI GGCC 3 cut(s) 655, 1171, 1180
BsoBI CYCGRG 2 cut(s) 675, 843
Bsp1286I GDGCHC 1 cut(s) 997
Bsp1407I TGTACA 3 cut(s) 433, 562, 1058
Bsp143I GATC 6 cut(s) 106, 274, 547, 1003, 1120, 1162
BspACI CCGC 7 cut(s) 48, 147, 150, 153, 385, 1168, 1237
BspANI GGCC 3 cut(s) 655, 1171, 1180
BspCNI CTCAG 3 cut(s) 195, 214, 1192
BspLI GGNNCC 2 cut(s) 574, 842
BspMAI CTGCAG 2 cut(s) 334, 1138
BspMI ACCTGC 1 cut(s) 1141
BspPI GGATC 1 cut(s) 1115
BspQI GCTCTTC 1 cut(s) 660
BsrGI TGTACA 3 cut(s) 433, 562, 1058
BsrI ACTGG 1 cut(s) 1093
BssECI CCNNGG 1 cut(s) 1172
BssMI GATC 6 cut(s) 106, 274, 547, 1003, 1120, 1162
BssSI CACGAG 1 cut(s) 543
BssT1I CCWWGG 1 cut(s) 1172
Bst2BI CACGAG 1 cut(s) 543
Bst2UI CCWGG 1 cut(s) 466
Bst4CI ACNGT 2 cut(s) 173, 1070
Bst6I CTCTTC 1 cut(s) 660
BstAUI TGTACA 3 cut(s) 433, 562, 1058
BstC8I GCNNGC 5 cut(s) 216, 657, 672, 774, 1237
BstDEI CTNAG 3 cut(s) 182, 201, 1200
BstF5I GGATG 2 cut(s) 534, 1243
BstH2I RGCGCY 1 cut(s) 296
BstHHI GCGC 2 cut(s) 259, 295
BstKTI GATC 6 cut(s) 109, 277, 550, 1006, 1123, 1165
BstMAI GTCTC 1 cut(s) 1254
BstMBI GATC 6 cut(s) 106, 274, 547, 1003, 1120, 1162
BstMWI GCNNNNNNNGC 5 cut(s) 254, 292, 461, 854, 1177
BstNI CCWGG 1 cut(s) 466
BstSCI CCNGG 2 cut(s) 352, 464
BstSFI CTRYAG 4 cut(s) 330, 660, 1134, 1289
BstV1I GCAGC 1 cut(s) 844
BstV2I GAAGAC 2 cut(s) 362, 764
BsuI GTATCC 1 cut(s) 105
BsuRI GGCC 3 cut(s) 655, 1171, 1180
BtsCI GGATG 2 cut(s) 534, 1243
BveI ACCTGC 1 cut(s) 1141
Cac8I GCNNGC 5 cut(s) 216, 657, 672, 774, 1237
CaiI CAGNNNCTG 1 cut(s) 338
CfoI GCGC 2 cut(s) 259, 295
Cfr13I GGNCC 4 cut(s) 350, 573, 653, 840
Csp6I GTAC 6 cut(s) 408, 434, 530, 563, 745, 1059
CviAII CATG 4 cut(s) 104, 442, 452, 1083
CviQI GTAC 6 cut(s) 408, 434, 530, 563, 745, 1059
DdeI CTNAG 3 cut(s) 182, 201, 1200
DpnI GATC 6 cut(s) 108, 276, 549, 1005, 1122, 1164
DpnII GATC 6 cut(s) 106, 274, 547, 1003, 1120, 1162
EaeI YGGCCR 2 cut(s) 1169, 1178
Eam1104I CTCTTC 1 cut(s) 660
EarI CTCTTC 1 cut(s) 660
Eco130I CCWWGG 1 cut(s) 1172
Eco24I GRGCYC 1 cut(s) 997
Eco47I GGWCC 3 cut(s) 350, 573, 840
Eco47III AGCGCT 1 cut(s) 294
Eco57I CTGAAG 3 cut(s) 776, 801, 1167
Eco88I CYCGRG 2 cut(s) 675, 843
EcoO109I RGGNCCY 1 cut(s) 840
EcoRII CCWGG 1 cut(s) 464
EcoT14I CCWWGG 1 cut(s) 1172
EcoT38I GRGCYC 1 cut(s) 997
ErhI CCWWGG 1 cut(s) 1172
Esp3I CGTCTC 1 cut(s) 1254
FaeI CATG 4 cut(s) 107, 445, 455, 1086
FalI AAGNNNNNCTT 2 cut(s) 279, 311
FaqI GGGAC 2 cut(s) 586, 826
FatI CATG 4 cut(s) 103, 441, 451, 1082
FauI CCCGC 1 cut(s) 1244
FauNDI CATATG 2 cut(s) 604, 951
FbaI TGATCA 1 cut(s) 1003
Fnu4HI GCNGC 4 cut(s) 150, 153, 858, 1169
FokI GGATG 2 cut(s) 521, 1230
FriOI GRGCYC 1 cut(s) 997
Fsp4HI GCNGC 4 cut(s) 150, 153, 858, 1169
FspBI CTAG 2 cut(s) 71, 825
GlaI GCGC 2 cut(s) 258, 294
GluI GCNGC 4 cut(s) 150, 153, 858, 1169
GsaI CCCAGC 1 cut(s) 1053
HaeII RGCGCY 1 cut(s) 296
HaeIII GGCC 3 cut(s) 655, 1171, 1180
HapII CCGG 1 cut(s) 353
HhaI GCGC 2 cut(s) 259, 295
Hin1II CATG 4 cut(s) 107, 445, 455, 1086
Hin6I GCGC 2 cut(s) 257, 293
HinP1I GCGC 2 cut(s) 257, 293
HincII GTYRAC 1 cut(s) 471
HindII GTYRAC 1 cut(s) 471
HinfI GANTC 4 cut(s) 58, 709, 760, 782
HpaI GTTAAC 1 cut(s) 471
HpaII CCGG 1 cut(s) 353
HphI GGTGA 3 cut(s) 185, 608, 695
Hpy166II GTNNAC 3 cut(s) 434, 471, 905
Hpy188I TCNGA 3 cut(s) 756, 870, 1254
Hpy188III TCNNGA 9 cut(s) 71, 160, 516, 545, 632, 706, 843, 890, 1015
Hpy8I GTNNAC 3 cut(s) 434, 471, 905
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 3 cut(s) 831, 948, 1200
HpyCH4III ACNGT 2 cut(s) 173, 1070
HpyCH4V TGCA 9 cut(s) 265, 286, 332, 689, 735, 878, 974, 1136, 1279
HpyF10VI GCNNNNNNNGC 5 cut(s) 254, 292, 461, 854, 1177
HpyF3I CTNAG 3 cut(s) 182, 201, 1200
Hsp92II CATG 4 cut(s) 107, 445, 455, 1086
HspAI GCGC 2 cut(s) 257, 293
Ksp22I TGATCA 1 cut(s) 1003
KspAI GTTAAC 1 cut(s) 471
Kzo9I GATC 6 cut(s) 106, 274, 547, 1003, 1120, 1162
LguI GCTCTTC 1 cut(s) 660
LmnI GCTCC 1 cut(s) 241
Lsp1109I GCAGC 1 cut(s) 844
LweI GCATC 6 cut(s) 59, 132, 577, 676, 983, 1280
MaeI CTAG 2 cut(s) 71, 825
MaeIII GTNAC 2 cut(s) 137, 340
MalI GATC 6 cut(s) 108, 276, 549, 1005, 1122, 1164
MboI GATC 6 cut(s) 106, 274, 547, 1003, 1120, 1162
MfeI CAATTG 2 cut(s) 777, 912
MhlI GDGCHC 1 cut(s) 997
MlsI TGGCCA 1 cut(s) 1180
MluNI TGGCCA 1 cut(s) 1180
MlyI GAGTC 2 cut(s) 703, 754
MmeI TCCRAC 1 cut(s) 63
Mox20I TGGCCA 1 cut(s) 1180
MscI TGGCCA 1 cut(s) 1180
MseI TTAA 4 cut(s) 311, 359, 470, 795
Msp20I TGGCCA 1 cut(s) 1180
MspA1I CMGCKG 2 cut(s) 135, 659
MspI CCGG 1 cut(s) 353
MspR9I CCNGG 2 cut(s) 354, 466
MunI CAATTG 2 cut(s) 777, 912
Mva1269I GAATGC 1 cut(s) 1239
MvaI CCWGG 1 cut(s) 466
MwoI GCNNNNNNNGC 5 cut(s) 254, 292, 461, 854, 1177
NciI CCSGG 1 cut(s) 354
NdeI CATATG 2 cut(s) 604, 951
NdeII GATC 6 cut(s) 106, 274, 547, 1003, 1120, 1162
NlaIII CATG 4 cut(s) 107, 445, 455, 1086
NlaIV GGNNCC 2 cut(s) 574, 842
NmuCI GTSAC 1 cut(s) 137
PaqCI CACCTGC 1 cut(s) 1141
PciSI GCTCTTC 1 cut(s) 660
PctI GAATGC 1 cut(s) 1239
PfeI GAWTC 2 cut(s) 58, 782
Pfl23II CGTACG 1 cut(s) 744
PflMI CCANNNNNTGG 1 cut(s) 428
PkrI GCNGC 4 cut(s) 151, 154, 859, 1170
PleI GAGTC 2 cut(s) 703, 754
PpsI GAGTC 2 cut(s) 703, 754
PpuMI RGGWCCY 1 cut(s) 840
PshBI ATTAAT 1 cut(s) 795
Psp5II RGGWCCY 1 cut(s) 840
Psp6I CCWGG 1 cut(s) 464
PspFI CCCAGC 1 cut(s) 1049
PspGI CCWGG 1 cut(s) 464
PspLI CGTACG 1 cut(s) 744
PspN4I GGNNCC 2 cut(s) 574, 842
PspPI GGNCC 4 cut(s) 350, 573, 653, 840
PspPPI RGGWCCY 1 cut(s) 840
PsrI GAACNNNNNNTAC 2 cut(s) 468, 500
PstI CTGCAG 2 cut(s) 334, 1138
PstNI CAGNNNCTG 1 cut(s) 338
PvuII CAGCTG 2 cut(s) 135, 659
RsaI GTAC 6 cut(s) 409, 435, 531, 564, 746, 1060
RsaNI GTAC 6 cut(s) 408, 434, 530, 563, 745, 1059
SapI GCTCTTC 1 cut(s) 660
SaqAI TTAA 4 cut(s) 311, 359, 470, 795
SatI GCNGC 4 cut(s) 150, 153, 858, 1169
Sau3AI GATC 6 cut(s) 106, 274, 547, 1003, 1120, 1162
Sau96I GGNCC 4 cut(s) 350, 573, 653, 840
SchI GAGTC 2 cut(s) 703, 754
ScrFI CCNGG 2 cut(s) 354, 466
SduI GDGCHC 1 cut(s) 997
SfaNI GCATC 6 cut(s) 59, 132, 577, 676, 983, 1280
SfcI CTRYAG 4 cut(s) 330, 660, 1134, 1289
SfiI GGCCNNNNNGGCC 1 cut(s) 1177
SinI GGWCC 3 cut(s) 350, 573, 840
SmlI CTYRAG 2 cut(s) 637, 762
SmoI CTYRAG 2 cut(s) 637, 762
SsiI CCGC 7 cut(s) 48, 147, 150, 153, 385, 1168, 1237
SspI AATATT 1 cut(s) 793
SspMI CTAG 2 cut(s) 71, 825
StyD4I CCNGG 2 cut(s) 352, 464
StyI CCWWGG 1 cut(s) 1172
TaaI ACNGT 2 cut(s) 173, 1070
TaqI TCGA 3 cut(s) 85, 126, 707
TaqII GACCGA 1 cut(s) 1209
TatI WGTACW 4 cut(s) 433, 529, 562, 1058
TauI GCSGC 3 cut(s) 152, 155, 1171
TfiI GAWTC 2 cut(s) 58, 782
Tru1I TTAA 4 cut(s) 311, 359, 470, 795
Tru9I TTAA 4 cut(s) 311, 359, 470, 795
TseFI GTSAC 1 cut(s) 137
TseI GCWGC 1 cut(s) 857
Tsp45I GTSAC 1 cut(s) 137
TspDTI ATGAA 3 cut(s) 731, 1155, 1232
TspGWI ACGGA 2 cut(s) 81, 1236
Van91I CCANNNNNTGG 1 cut(s) 428
VpaK11BI GGWCC 3 cut(s) 350, 573, 840
VspI ATTAAT 1 cut(s) 795
XapI RAATTY 3 cut(s) 31, 177, 701
XbaI TCTAGA 1 cut(s) 70
XspI CTAG 2 cut(s) 71, 825
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.