AT2G45300

Belongs to the EPSP synthase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
18677311 .. 18681889
4579 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G45300.2

Sequence Viewer

Length: 1563 bp
ATGGCGCAAGTTAGCAGAATCTGCAATGGTGTGCAGAACCCATCTCTTATCTCCAATCTCTCGAAATCCAGTCAACGCAAATCTCCCTTATCGGTTTCTCTGAAGACGCAGCAGCATCCACGAGCTTATCCGATTTCGTCGTCGTGGGGATTGAAGAAGAGTGGGATGACGTTAATTGGCTCTGAGCTTCGTCCTCTTAAGGTCATGTCTTCTGTTTCCACGGCGGAGAAAGCGTCGGAGATTGTACTTCAACCCATTAGAGAAATCTCCGGTCTTATTAAGCTTCCTGGCTCCAAGTCTCTATCAAATCGGATCCTGCTTCTCGCTGCTCTGTCTGAGGGAACAACTGTAGTGGACAACTTGTTGAATAGCGATGACATCAATTACATGCTTGATGCGTTGAAGAGATTGGGACTTAATGTGGAAACTGACAGTGAAAATAATCGTGCTGTAGTTGAAGGATGTGGCGGGATATTCCCAGCTTCCATAGATTCAAAGAGTGATATCGAACTTTACCTCGGTAATGCAGGAACAGCAATGCGTCCACTTACCGCTGCGGTCACTGCTGCAGGTGGAAACGCAAGTTATGTGCTTGATGGGGTGCCTCGTATGAGAGAAAGACCTATAGGGGATTTGGTTGTTGGTCTTAAGCAGCTTGGTGCTGATGTTGAATGTACTCTTGGAACTAACTGCCCTCCTGTTCGTGTCAACGCTAATGGTGGCCTTCCCGGTGGAAAGGTGAAGCTTTCTGGATCAATTAGTAGTCAGTACTTGACTGCTCTGCTCATGTCTGCTCCCTTAGCTCTTGGAGACGTCGAGATTGAGATTGTCGATAAATTAATTTCTGTTCCATATGTTGAAATGACATTGAAGTTGATGGAACGTTTCGGGGTTAGTGTCGAGCATAGTGATAGCTGGGATCGTTTCTTTGTCAAGGGCGGGCAAAAATACAAGTCTCCGGGTAATGCGTATGTAGAAGGTGATGCTTCTAGTGCTAGTTATTTCTTGGCTGGTGCTGCCATTACCGGTGAAACTGTCACAGTCGAAGGTTGTGGAACTACCAGCTTGCAGGGAGATGTAAAATTCGCCGAGGTCCTTGAGAAAATGGGATGTAAAGTGTCCTGGACAGAGAACAGTGTGACTGTGACAGGACCACCTAGAGATGCTTTTGGAATGAGACACTTGCGGGCTATTGATGTCAACATGAACAAAATGCCTGATGTAGCCATGACCCTTGCCGTCGTTGCTCTCTTTGCTGACGGTCCAACCACCATTAGAGATGTGGCTAGCTGGAGAGTAAAGGAGACAGAAAGGATGATTGCCATTTGCACAGAGCTTAGAAAACTGGGAGCTACAGTGGAAGAAGGTTCAGATTATTGTGTGATAACTCCGCCCAAAAAGGTGAAAACGGCAGAGATTGATACATATGATGATCATAGAATGGCAATGGCATTCTCTCTTGCAGCTTGTGCTGATGTTCCAATCACCATCAACGATCCTGGTTGCACCAGGAAAACCTTCCCCGACTACTTCCAAGTACTTGAAAGAATCACAAAGCACTAA

Protein Analysis

520

Amino Acids

55.73

Weight (kDa)

6.3

Isoelectric Point (pI)

33.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EPSP_synthase PF00275 84 - 514 2.3e-141 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 560
AatII GACGTC 1 cut(s) 816
Acc36I ACCTGC 1 cut(s) 560
AccB1I GGYRCC 1 cut(s) 601
AciI CCGC 7 cut(s) 224, 468, 552, 557, 939, 1186, 1391
AclI AACGTT 1 cut(s) 883
AclWI GGATC 5 cut(s) 307, 320, 760, 927, 1490
AcsI RAATTY 1 cut(s) 1082
AcuI CTGAAG 1 cut(s) 122
AcyI GRCGYC 1 cut(s) 813
AfaI GTAC 4 cut(s) 246, 676, 770, 1539
AflII CTTAAG 2 cut(s) 197, 647
AgeI ACCGGT 1 cut(s) 1025
AjnI CCWGG 4 cut(s) 286, 1121, 1498, 1508
AjuI GAANNNNNNNTTGG 2 cut(s) 663, 695
Alw26I GTCTC 5 cut(s) 303, 804, 960, 1171, 1298
AlwI GGATC 5 cut(s) 307, 320, 760, 927, 1490
AlwNI CAGNNNCTG 1 cut(s) 21
AoxI GGCC 1 cut(s) 721
ApeKI GCWGC 8 cut(s) 109, 112, 326, 554, 566, 652, 1016, 1463
ApoI RAATTY 1 cut(s) 1082
AseI ATTAAT 1 cut(s) 839
AsiGI ACCGGT 1 cut(s) 1025
Asp700I GAANNNNTTC 1 cut(s) 1517
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 3 cut(s) 1093, 1151, 1262
AsuC2I CCSGG 2 cut(s) 729, 960
AsuHPI GGTGA 5 cut(s) 751, 992, 1040, 1414, 1477
AsuNHI GCTAGC 1 cut(s) 1286
AvaII GGWCC 3 cut(s) 1093, 1151, 1262
BamHI GGATCC 1 cut(s) 312
BanI GGYRCC 1 cut(s) 601
BauI CACGAG 1 cut(s) 120
BbsI GAAGAC 2 cut(s) 110, 201
BbvI GCAGC 8 cut(s) 121, 124, 313, 541, 553, 664, 1003, 1475
BccI CCATC 4 cut(s) 49, 590, 871, 1496
BceAI ACGGC 3 cut(s) 237, 1223, 1425
BciT130I CCWGG 4 cut(s) 288, 1123, 1500, 1510
BclI TGATCA 1 cut(s) 1432
BcnI CCSGG 2 cut(s) 729, 960
BcoDI GTCTC 5 cut(s) 303, 804, 960, 1171, 1298
BfaI CTAG 4 cut(s) 990, 996, 1158, 1287
BfmI CTRYAG 5 cut(s) 348, 450, 567, 624, 1353
BfrI CTTAAG 2 cut(s) 197, 647
BfuAI ACCTGC 1 cut(s) 560
BisI GCNGC 8 cut(s) 110, 113, 327, 555, 567, 653, 1017, 1464
BlsI GCNGC 8 cut(s) 111, 114, 328, 556, 568, 654, 1018, 1465
BmcAI AGTACT 2 cut(s) 770, 1539
Bme1390I CCNGG 6 cut(s) 288, 729, 960, 1123, 1500, 1510
Bme18I GGWCC 3 cut(s) 1093, 1151, 1262
BmgT120I GGNCC 3 cut(s) 1093, 1151, 1262
BmiI GGNNCC 3 cut(s) 292, 314, 603
BmrFI CCNGG 6 cut(s) 288, 729, 960, 1123, 1500, 1510
BmrI ACTGGG 1 cut(s) 1355
BmsI GCATC 4 cut(s) 124, 385, 973, 1153
BmtI GCTAGC 1 cut(s) 1290
BmuI ACTGGG 1 cut(s) 1355
BpiI GAAGAC 2 cut(s) 110, 201
BpmI CTGGAG 1 cut(s) 1312
Bpu10I CCTNAGC 1 cut(s) 799
BpuEI CTTGAG 1 cut(s) 1118
BpuMI CCSGG 2 cut(s) 729, 960
BsaHI GRCGYC 1 cut(s) 813
BsaJI CCNNGG 3 cut(s) 219, 517, 1089
BsaWI WCCGGW 2 cut(s) 269, 1025
BsaXI ACNNNNNCTCC 4 cut(s) 218, 248, 1341, 1371
Bse118I RCCGGY 1 cut(s) 1025
Bse1I ACTGG 2 cut(s) 69, 1350
Bse3DI GCAATG 3 cut(s) 31, 543, 1452
BseBI CCWGG 4 cut(s) 288, 1123, 1500, 1510
BseDI CCNNGG 3 cut(s) 219, 517, 1089
BseGI GGATG 5 cut(s) 115, 171, 467, 1115, 1320
BseMI GCAATG 3 cut(s) 31, 543, 1452
BseMII CTCAG 2 cut(s) 174, 327
BseNI ACTGG 2 cut(s) 69, 1350
BseXI GCAGC 8 cut(s) 121, 124, 313, 541, 553, 664, 1003, 1475
BseYI CCCAGC 2 cut(s) 478, 915
BsgI GTGCAG 1 cut(s) 53
BshFI GGCC 1 cut(s) 723
BshNI GGYRCC 1 cut(s) 601
BshTI ACCGGT 1 cut(s) 1025
BsiSI CCGG 4 cut(s) 270, 729, 959, 1026
BslFI GGGAC 1 cut(s) 426
BsmAI GTCTC 5 cut(s) 303, 804, 960, 1171, 1298
BsmBI CGTCTC 1 cut(s) 804
BsmFI GGGAC 1 cut(s) 426
BsmI GAATGC 1 cut(s) 1451
BsnI GGCC 1 cut(s) 723
Bsp143I GATC 5 cut(s) 312, 752, 919, 1432, 1495
BspACI CCGC 7 cut(s) 224, 468, 552, 557, 939, 1186, 1391
BspANI GGCC 1 cut(s) 723
BspCNI CTCAG 2 cut(s) 175, 328
BspLI GGNNCC 3 cut(s) 292, 314, 603
BspMAI CTGCAG 1 cut(s) 571
BspMI ACCTGC 1 cut(s) 560
BspOI GCTAGC 1 cut(s) 1290
BspPI GGATC 5 cut(s) 307, 320, 760, 927, 1490
BspT107I GGYRCC 1 cut(s) 601
BspTI CTTAAG 2 cut(s) 197, 647
BsrDI GCAATG 3 cut(s) 31, 543, 1452
BsrFI RCCGGY 1 cut(s) 1025
BsrI ACTGG 2 cut(s) 69, 1350
BssAI RCCGGY 1 cut(s) 1025
BssECI CCNNGG 3 cut(s) 219, 517, 1089
BssMI GATC 5 cut(s) 312, 752, 919, 1432, 1495
BssNI GRCGYC 1 cut(s) 813
BssSI CACGAG 1 cut(s) 120
Bst2BI CACGAG 1 cut(s) 120
Bst2UI CCWGG 4 cut(s) 288, 1123, 1500, 1510
Bst4CI ACNGT 8 cut(s) 349, 434, 1036, 1042, 1136, 1144, 1262, 1357
Bst6I CTCTTC 2 cut(s) 152, 398
BstACI GRCGYC 1 cut(s) 813
BstAFI CTTAAG 2 cut(s) 197, 647
BstAPI GCANNNNNTGC 2 cut(s) 21, 1469
BstC8I GCNNGC 4 cut(s) 941, 1067, 1188, 1288
BstDEI CTNAG 4 cut(s) 183, 336, 799, 1337
BstDSI CCRYGG 1 cut(s) 219
BstF5I GGATG 5 cut(s) 115, 171, 467, 1115, 1320
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 5 cut(s) 315, 755, 922, 1435, 1498
BstMAI GTCTC 5 cut(s) 303, 804, 960, 1171, 1298
BstMBI GATC 5 cut(s) 312, 752, 919, 1432, 1495
BstNI CCWGG 4 cut(s) 288, 1123, 1500, 1510
BstNSI RCATGY 1 cut(s) 391
BstSCI CCNGG 6 cut(s) 286, 727, 958, 1121, 1498, 1508
BstSFI CTRYAG 5 cut(s) 348, 450, 567, 624, 1353
BstV1I GCAGC 8 cut(s) 121, 124, 313, 541, 553, 664, 1003, 1475
BstV2I GAAGAC 2 cut(s) 110, 201
BstX2I RGATCY 1 cut(s) 312
BstYI RGATCY 1 cut(s) 312
BsuRI GGCC 1 cut(s) 723
BtgI CCRYGG 1 cut(s) 219
BtgZI GCGATG 1 cut(s) 387
BtsCI GGATG 5 cut(s) 115, 171, 467, 1115, 1320
BtsI GCAGTG 1 cut(s) 561
BtsIMutI CAGTG 4 cut(s) 439, 561, 1141, 1362
BveI ACCTGC 1 cut(s) 560
Cac8I GCNNGC 4 cut(s) 941, 1067, 1188, 1288
CaiI CAGNNNCTG 1 cut(s) 21
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 1 cut(s) 1025
Cfr13I GGNCC 3 cut(s) 1093, 1151, 1262
CseI GACGC 3 cut(s) 115, 222, 530
Csp6I GTAC 4 cut(s) 245, 675, 769, 1538
CspAI ACCGGT 1 cut(s) 1025
CspCI CAANNNNNGTGG 2 cut(s) 333, 368
CviAII CATG 5 cut(s) 205, 388, 787, 1204, 1228
CviQI GTAC 4 cut(s) 245, 675, 769, 1538
DdeI CTNAG 4 cut(s) 183, 336, 799, 1337
DpnI GATC 5 cut(s) 314, 754, 921, 1434, 1497
DpnII GATC 5 cut(s) 312, 752, 919, 1432, 1495
Eam1104I CTCTTC 2 cut(s) 152, 398
EarI CTCTTC 2 cut(s) 152, 398
EciI GGCGGA 2 cut(s) 239, 1380
Eco32I GATATC 1 cut(s) 505
Eco47I GGWCC 3 cut(s) 1093, 1151, 1262
Eco57I CTGAAG 1 cut(s) 122
EcoO109I RGGNCCY 1 cut(s) 1093
EcoRII CCWGG 4 cut(s) 286, 1121, 1498, 1508
EcoRV GATATC 1 cut(s) 505
Esp3I CGTCTC 1 cut(s) 804
FaeI CATG 5 cut(s) 208, 391, 790, 1207, 1231
FaqI GGGAC 1 cut(s) 426
FatI CATG 5 cut(s) 204, 387, 786, 1203, 1227
FauI CCCGC 3 cut(s) 461, 932, 1179
FauNDI CATATG 2 cut(s) 853, 1426
FbaI TGATCA 1 cut(s) 1432
Fnu4HI GCNGC 8 cut(s) 110, 113, 327, 555, 567, 653, 1017, 1464
FokI GGATG 5 cut(s) 102, 178, 474, 1122, 1327
Fsp4HI GCNGC 8 cut(s) 110, 113, 327, 555, 567, 653, 1017, 1464
FspBI CTAG 4 cut(s) 990, 996, 1158, 1287
GlaI GCGC 1 cut(s) 6
GluI GCNGC 8 cut(s) 110, 113, 327, 555, 567, 653, 1017, 1464
GsaI CCCAGC 2 cut(s) 482, 919
GsuI CTGGAG 1 cut(s) 1312
HaeIII GGCC 1 cut(s) 723
HapII CCGG 4 cut(s) 270, 729, 959, 1026
HgaI GACGC 3 cut(s) 115, 222, 530
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 813
Hin1II CATG 5 cut(s) 208, 391, 790, 1207, 1231
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 3 cut(s) 74, 709, 1201
HindII GTYRAC 3 cut(s) 74, 709, 1201
HindIII AAGCTT 2 cut(s) 281, 743
HinfI GANTC 3 cut(s) 18, 491, 1548
HpaII CCGG 4 cut(s) 270, 729, 959, 1026
HphI GGTGA 5 cut(s) 751, 992, 1040, 1414, 1477
Hpy166II GTNNAC 5 cut(s) 74, 355, 545, 709, 1201
Hpy188I TCNGA 7 cut(s) 102, 132, 184, 238, 312, 337, 1372
Hpy188III TCNNGA 3 cut(s) 61, 750, 817
Hpy8I GTNNAC 5 cut(s) 74, 355, 545, 709, 1201
Hpy99I CGWCG 5 cut(s) 142, 145, 238, 818, 1244
HpyAV CCTTC 6 cut(s) 452, 734, 971, 1040, 1358, 1528
HpyCH4III ACNGT 8 cut(s) 349, 434, 1036, 1042, 1136, 1144, 1262, 1357
HpyCH4IV ACGT 3 cut(s) 170, 813, 883
HpyCH4V TGCA 8 cut(s) 24, 34, 527, 569, 1069, 1329, 1463, 1506
HpyF3I CTNAG 4 cut(s) 183, 336, 799, 1337
HpySE526I ACGT 3 cut(s) 170, 813, 883
Hsp92I GRCGYC 1 cut(s) 813
Hsp92II CATG 5 cut(s) 208, 391, 790, 1207, 1231
HspAI GCGC 1 cut(s) 5
Ksp22I TGATCA 1 cut(s) 1432
Kzo9I GATC 5 cut(s) 312, 752, 919, 1432, 1495
LmnI GCTCC 3 cut(s) 296, 799, 1349
Lsp1109I GCAGC 8 cut(s) 121, 124, 313, 541, 553, 664, 1003, 1475
LweI GCATC 4 cut(s) 124, 385, 973, 1153
MaeI CTAG 4 cut(s) 990, 996, 1158, 1287
MaeII ACGT 3 cut(s) 170, 813, 883
MaeIII GTNAC 4 cut(s) 559, 1036, 1138, 1144
MalI GATC 5 cut(s) 314, 754, 921, 1434, 1497
MboI GATC 5 cut(s) 312, 752, 919, 1432, 1495
MboII GAAGA 6 cut(s) 115, 166, 169, 201, 415, 1373
MflI RGATCY 1 cut(s) 312
MluCI AATT 6 cut(s) 174, 382, 756, 836, 840, 1082
MmeI TCCRAC 2 cut(s) 216, 1289
MnlI CCTC 6 cut(s) 204, 331, 527, 615, 705, 1084
MroXI GAANNNNTTC 1 cut(s) 1517
MseI TTAA 6 cut(s) 173, 198, 279, 417, 648, 839
MspA1I CMGCKG 1 cut(s) 554
MspCI CTTAAG 2 cut(s) 197, 647
MspI CCGG 4 cut(s) 270, 729, 959, 1026
MspR9I CCNGG 6 cut(s) 288, 729, 960, 1123, 1500, 1510
Mva1269I GAATGC 1 cut(s) 1451
MvaI CCWGG 4 cut(s) 288, 1123, 1500, 1510
NciI CCSGG 2 cut(s) 729, 960
NdeI CATATG 2 cut(s) 853, 1426
NdeII GATC 5 cut(s) 312, 752, 919, 1432, 1495
NheI GCTAGC 1 cut(s) 1286
NlaIII CATG 5 cut(s) 208, 391, 790, 1207, 1231
NlaIV GGNNCC 3 cut(s) 292, 314, 603
NmeAIII GCCGAG 1 cut(s) 1114
NmuCI GTSAC 4 cut(s) 559, 1036, 1138, 1144
NspI RCATGY 1 cut(s) 391
PaqCI CACCTGC 1 cut(s) 560
PctI GAATGC 1 cut(s) 1451
PdmI GAANNNNTTC 1 cut(s) 1517
PfeI GAWTC 3 cut(s) 18, 491, 1548
PfoI TCCNGGA 1 cut(s) 1121
PinAI ACCGGT 1 cut(s) 1025
PkrI GCNGC 8 cut(s) 111, 114, 328, 556, 568, 654, 1018, 1465
PpuMI RGGWCCY 1 cut(s) 1093
PshBI ATTAAT 1 cut(s) 839
Psp1406I AACGTT 1 cut(s) 883
Psp5II RGGWCCY 1 cut(s) 1093
Psp6I CCWGG 4 cut(s) 286, 1121, 1498, 1508
PspFI CCCAGC 2 cut(s) 478, 915
PspGI CCWGG 4 cut(s) 286, 1121, 1498, 1508
PspN4I GGNNCC 3 cut(s) 292, 314, 603
PspPI GGNCC 3 cut(s) 1093, 1151, 1262
PspPPI RGGWCCY 1 cut(s) 1093
PstI CTGCAG 1 cut(s) 571
PstNI CAGNNNCTG 1 cut(s) 21
PsuI RGATCY 1 cut(s) 312
RsaI GTAC 4 cut(s) 246, 676, 770, 1539
RsaNI GTAC 4 cut(s) 245, 675, 769, 1538
SaqAI TTAA 6 cut(s) 173, 198, 279, 417, 648, 839
SatI GCNGC 8 cut(s) 110, 113, 327, 555, 567, 653, 1017, 1464
Sau3AI GATC 5 cut(s) 312, 752, 919, 1432, 1495
Sau96I GGNCC 3 cut(s) 1093, 1151, 1262
ScaI AGTACT 2 cut(s) 770, 1539
ScrFI CCNGG 6 cut(s) 288, 729, 960, 1123, 1500, 1510
SfaNI GCATC 4 cut(s) 124, 385, 973, 1153
SfcI CTRYAG 5 cut(s) 348, 450, 567, 624, 1353
SinI GGWCC 3 cut(s) 1093, 1151, 1262
SmlI CTYRAG 3 cut(s) 197, 647, 1097
SmoI CTYRAG 3 cut(s) 197, 647, 1097
Sse9I AATT 6 cut(s) 174, 382, 756, 836, 840, 1082
SsiI CCGC 7 cut(s) 224, 468, 552, 557, 939, 1186, 1391
SspMI CTAG 4 cut(s) 990, 996, 1158, 1287
StyD4I CCNGG 6 cut(s) 286, 727, 958, 1121, 1498, 1508
TaaI ACNGT 8 cut(s) 349, 434, 1036, 1042, 1136, 1144, 1262, 1357
TaiI ACGT 3 cut(s) 173, 816, 886
TaqI TCGA 6 cut(s) 62, 507, 816, 831, 900, 1044
TasI AATT 6 cut(s) 174, 382, 756, 836, 840, 1082
TatI WGTACW 4 cut(s) 244, 674, 768, 1537
TfiI GAWTC 3 cut(s) 18, 491, 1548
Tru1I TTAA 6 cut(s) 173, 198, 279, 417, 648, 839
Tru9I TTAA 6 cut(s) 173, 198, 279, 417, 648, 839
TscAI CASTG 4 cut(s) 439, 568, 1141, 1362
TseFI GTSAC 4 cut(s) 559, 1036, 1138, 1144
TseI GCWGC 8 cut(s) 109, 112, 326, 554, 566, 652, 1016, 1463
Tsp45I GTSAC 4 cut(s) 559, 1036, 1138, 1144
TspDTI ATGAA 1 cut(s) 1220
TspRI CASTG 4 cut(s) 439, 568, 1141, 1362
Vha464I CTTAAG 2 cut(s) 197, 647
VpaK11BI GGWCC 3 cut(s) 1093, 1151, 1262
VspI ATTAAT 1 cut(s) 839
XapI RAATTY 1 cut(s) 1082
XceI RCATGY 1 cut(s) 391
XcmI CCANNNNNNNNNTGG 1 cut(s) 1279
XmnI GAANNNNTTC 1 cut(s) 1517
XspI CTAG 4 cut(s) 990, 996, 1158, 1287
ZraI GACGTC 1 cut(s) 814
ZrmI AGTACT 2 cut(s) 770, 1539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.