Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039385.1

Orthogroup ID

OG0004684

Physical Location & Seq

Genomic Coordinates Reverse (-)

197 .. 451

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039385.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

atgaaaaatgggtttgtgggtaactgcgcggttggtaaggccagggctggtgggctgagagtttcggcttcagttgttacagcagagaagccgtcgacggtgccggagattgtgttgcaacccatcaaagaaatttcgggtaccataactttgccgggttctaagtccttgtccaatcggattctgcttattgctgctctttctgaggtacttaaagattgtggctttgctgtttatttgatatgtgaactttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003866 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009423 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046417 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

EPSP_synthase

Protein Analysis

84

Amino Acids

8.72

Weight (kDa)

8.96

Isoelectric Point (pI)

24.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48860 AT1G48860 AT2G45300 AT2G45300 AT2G45300 AT2G45300
fragaria_vesca	FvH4_7g11530 FvH4_7g11530
malus_domestica	MD02G1207300.v1.1 MD02G1207500.v1.1 MD07G1119600.v1.1 MD10G1038600.v1.1 MD14G1236200.v1.1
prunus_persica	Prupe.2G143700_v2.0.a1
pyrus_communis	pycom02g16870 pycom04g13590 pycom06g15290 pycom07g10510
rosa_chinensis	RchiOBHm_Chr1g0349971
rosa_laevigata	RLG00000028512
rosa_multiflora	Rmu_sc0000778.1_g000001 Rmu_sc0005220.1_g000012 Rmu_sc0039385.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305240
rosa_rugosa	Rorug01G0207400 Rorug01G0207500
rosa_samantha	Rh1AG224000 Rh1BG191200 Rh1CG208700 Rh1DG219800
rosa_wichuraiana	Rw0G007590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	140
AccB1I	GGYRCC	2 cut(s)	100, 140
AccI	GTMKAC	1 cut(s)	95
AccII	CGCG	1 cut(s)	29
AciI	CCGC	1 cut(s)	29
AcsI	RAATTY	1 cut(s)	132
AcuI	CTGAAG	1 cut(s)	54
AfaI	GTAC	2 cut(s)	142, 210
AjnI	CCWGG	1 cut(s)	41
AoxI	GGCC	1 cut(s)	39
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	1 cut(s)	132
Asp718I	GGTACC	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	29
AsuC2I	CCSGG	1 cut(s)	156
BanI	GGYRCC	2 cut(s)	100, 140
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	1 cut(s)	131
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	1 cut(s)	43
BcnI	CCSGG	1 cut(s)	156
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
Bme1390I	CCNGG	2 cut(s)	43, 156
BmiI	GGNNCC	2 cut(s)	102, 142
BmrFI	CCNGG	2 cut(s)	43, 156
BpuMI	CCSGG	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	42
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
BseBI	CCWGG	1 cut(s)	43
BseDI	CCNNGG	1 cut(s)	42
BseMII	CTCAG	2 cut(s)	47, 195
BseXI	GCAGC	1 cut(s)	181
Bsh1236I	CGCG	1 cut(s)	29
BshFI	GGCC	1 cut(s)	41
BshNI	GGYRCC	2 cut(s)	100, 140
BsiSI	CCGG	2 cut(s)	104, 155
BsnI	GGCC	1 cut(s)	41
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	1 cut(s)	41
BspCNI	CTCAG	2 cut(s)	48, 196
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	2 cut(s)	102, 142
BspT107I	GGYRCC	2 cut(s)	100, 140
BssECI	CCNNGG	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	43
Bst4CI	ACNGT	1 cut(s)	100
BstDEI	CTNAG	3 cut(s)	56, 162, 204
BstFNI	CGCG	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	29
BstNI	CCWGG	1 cut(s)	43
BstSCI	CCNGG	2 cut(s)	41, 154
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	1 cut(s)	181
BsuRI	GGCC	1 cut(s)	41
CfoI	GCGC	1 cut(s)	29
Csp6I	GTAC	2 cut(s)	141, 209
CviJI	RGCY	6 cut(s)	41, 47, 55, 68, 91, 225
CviKI_1	RGCY	6 cut(s)	41, 47, 55, 68, 91, 225
CviQI	GTAC	2 cut(s)	141, 209
DdeI	CTNAG	3 cut(s)	56, 162, 204
Eco57I	CTGAAG	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	41
FaiI	YATR	2 cut(s)	146, 244
FblI	GTMKAC	1 cut(s)	95
Fnu4HI	GCNGC	1 cut(s)	195
Fsp4HI	GCNGC	1 cut(s)	195
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	41
HapII	CCGG	2 cut(s)	104, 155
HhaI	GCGC	1 cut(s)	29
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HincII	GTYRAC	1 cut(s)	96
HindII	GTYRAC	1 cut(s)	96
HinfI	GANTC	1 cut(s)	181
HpaII	CCGG	2 cut(s)	104, 155
Hpy166II	GTNNAC	2 cut(s)	96, 248
Hpy188I	TCNGA	2 cut(s)	180, 205
Hpy8I	GTNNAC	2 cut(s)	96, 248
Hpy99I	CGWCG	2 cut(s)	97, 100
HpyCH4III	ACNGT	1 cut(s)	100
HpyCH4V	TGCA	1 cut(s)	118
HpyF3I	CTNAG	3 cut(s)	56, 162, 204
HspAI	GCGC	1 cut(s)	27
KpnI	GGTACC	1 cut(s)	144
LpnPI	CCDG	5 cut(s)	28, 33, 55, 117, 168
Lsp1109I	GCAGC	1 cut(s)	181
MaeIII	GTNAC	2 cut(s)	20, 76
MluCI	AATT	1 cut(s)	132
MnlI	CCTC	1 cut(s)	199
MseI	TTAA	1 cut(s)	213
MspI	CCGG	2 cut(s)	104, 155
MspR9I	CCNGG	2 cut(s)	43, 156
MvaI	CCWGG	1 cut(s)	43
MvnI	CGCG	1 cut(s)	29
NciI	CCSGG	1 cut(s)	156
NlaIV	GGNNCC	2 cut(s)	102, 142
PfeI	GAWTC	1 cut(s)	181
PkrI	GCNGC	1 cut(s)	196
Psp6I	CCWGG	1 cut(s)	41
PspGI	CCWGG	1 cut(s)	41
PspN4I	GGNNCC	2 cut(s)	102, 142
RsaI	GTAC	2 cut(s)	142, 210
RsaNI	GTAC	2 cut(s)	141, 209
SalI	GTCGAC	1 cut(s)	94
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	1 cut(s)	195
ScrFI	CCNGG	2 cut(s)	43, 156
SetI	ASST	1 cut(s)	210
SgeI	CNNG	9 cut(s)	40, 54, 55, 60, 116, 150, 167, 168, 181
SgrDI	CGTCGACG	1 cut(s)	94
Sse9I	AATT	1 cut(s)	132
SsiI	CCGC	1 cut(s)	29
StyD4I	CCNGG	2 cut(s)	41, 154
TaaI	ACNGT	1 cut(s)	100
TaqI	TCGA	1 cut(s)	95
TasI	AATT	1 cut(s)	132
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TseI	GCWGC	1 cut(s)	194
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	132
XmiI	GTMKAC	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.