Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004684

Physical Location & Seq

Genomic Coordinates Forward (+)

29265693 .. 29267531

Gene Structure 1839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0207500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCAGAAAGCACATATTGATCCTTTCACACAAGGTATTTGCAAGCCATCTGCAGCTCAAGGGGTTCCGCTCGGAGGGATGGGAAGTGGCAGCATCTCAAGAGGTTTTAGAGGCGAGTTCAGGCAATGGCAAATCATTCCGGGTGCATGTGATGGTTCTCCTGACATGGCCAATCAATTCTCTAGGTACAAACCAAGACCCATGAGGGCTGAAAGAGGCAATGAGTTGCATAATGGGAAGTTGATTGTGCAGAATTGGGGATTTCGGAGTTGGCTTGATGGGATTCAGTCAATGGCTATCCCACTAAGAGTTAATCTTTATACTGATAAGGCTTCAAAAGACGGGAAGGACAGAAGAGGCAGGGAAATCCAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003866 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009423 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046417 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

EPSP_synthase

Protein Analysis

125

Amino Acids

13.93

Weight (kDa)

10.1

Isoelectric Point (pI)

31.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydr_116N	PF12215	21 - 68	4.7e-14	beta-glucosidase 2, glycosyl-hydrolase family 116 N-term

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48860 AT1G48860 AT2G45300 AT2G45300 AT2G45300 AT2G45300
fragaria_vesca	FvH4_7g11530 FvH4_7g11530
malus_domestica	MD02G1207300.v1.1 MD02G1207500.v1.1 MD07G1119600.v1.1 MD10G1038600.v1.1 MD14G1236200.v1.1
prunus_persica	Prupe.2G143700_v2.0.a1
pyrus_communis	pycom02g16870 pycom04g13590 pycom06g15290 pycom07g10510
rosa_chinensis	RchiOBHm_Chr1g0349971
rosa_laevigata	RLG00000028512
rosa_multiflora	Rmu_sc0000778.1_g000001 Rmu_sc0005220.1_g000012 Rmu_sc0039385.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305240
rosa_rugosa	Rorug01G0207400 Rorug01G0207500
rosa_samantha	Rh1AG224000 Rh1BG191200 Rh1CG208700 Rh1DG219800
rosa_wichuraiana	Rw0G007590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	70
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	1 cut(s)	14
AcoI	YGGCCR	1 cut(s)	168
AfaI	GTAC	1 cut(s)	188
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	1 cut(s)	336
AluBI	AGCT	1 cut(s)	56
AluI	AGCT	1 cut(s)	56
AlwI	GGATC	1 cut(s)	14
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	2 cut(s)	53, 90
AsuC2I	CCSGG	1 cut(s)	141
BalI	TGGCCA	1 cut(s)	170
BbvI	GCAGC	2 cut(s)	65, 102
BccI	CCATC	4 cut(s)	55, 73, 146, 272
BcnI	CCSGG	1 cut(s)	141
BfaI	CTAG	1 cut(s)	183
BfmI	CTRYAG	1 cut(s)	51
BisI	GCNGC	2 cut(s)	54, 91
BlsI	GCNGC	2 cut(s)	55, 92
Bme1390I	CCNGG	1 cut(s)	141
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	1 cut(s)	141
BmsI	GCATC	1 cut(s)	102
BpuEI	CTTGAG	2 cut(s)	42, 82
BpuMI	CCSGG	1 cut(s)	141
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse3DI	GCAATG	2 cut(s)	131, 226
BseGI	GGATG	1 cut(s)	84
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMI	GCAATG	2 cut(s)	131, 226
BseXI	GCAGC	2 cut(s)	65, 102
BsgI	GTGCAG	1 cut(s)	269
BshFI	GGCC	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	140
BslI	CCNNNNNNNGG	1 cut(s)	74
BsnI	GGCC	1 cut(s)	170
Bsp143I	GATC	1 cut(s)	19
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	1 cut(s)	170
BspLI	GGNNCC	1 cut(s)	66
BspMAI	CTGCAG	1 cut(s)	55
BspPI	GGATC	1 cut(s)	14
BsrBI	CCGCTC	1 cut(s)	70
BsrDI	GCAATG	2 cut(s)	131, 226
BssMI	GATC	1 cut(s)	19
Bst6I	CTCTTC	1 cut(s)	349
BstC8I	GCNNGC	1 cut(s)	44
BstDEI	CTNAG	1 cut(s)	305
BstF5I	GGATG	1 cut(s)	84
BstKTI	GATC	1 cut(s)	22
BstMBI	GATC	1 cut(s)	19
BstNSI	RCATGY	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	139
BstSFI	CTRYAG	1 cut(s)	51
BstV1I	GCAGC	2 cut(s)	65, 102
BsuRI	GGCC	1 cut(s)	170
BtsCI	GGATG	1 cut(s)	84
Cac8I	GCNNGC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	187
CviAII	CATG	3 cut(s)	147, 166, 202
CviJI	RGCY	7 cut(s)	46, 56, 170, 209, 274, 296, 332
CviKI_1	RGCY	7 cut(s)	46, 56, 170, 209, 274, 296, 332
CviQI	GTAC	1 cut(s)	187
DdeI	CTNAG	1 cut(s)	305
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
EaeI	YGGCCR	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	349
EarI	CTCTTC	1 cut(s)	349
FaeI	CATG	3 cut(s)	150, 169, 205
FaiI	YATR	6 cut(s)	15, 148, 167, 203, 231, 321
FatI	CATG	3 cut(s)	146, 165, 201
Fnu4HI	GCNGC	2 cut(s)	54, 91
FokI	GGATG	1 cut(s)	91
Fsp4HI	GCNGC	2 cut(s)	54, 91
FspBI	CTAG	1 cut(s)	183
GluI	GCNGC	2 cut(s)	54, 91
HaeIII	GGCC	1 cut(s)	170
HapII	CCGG	1 cut(s)	140
Hin1II	CATG	3 cut(s)	150, 169, 205
HinfI	GANTC	1 cut(s)	283
HpaII	CCGG	1 cut(s)	140
Hpy188I	TCNGA	2 cut(s)	74, 267
Hpy188III	TCNNGA	2 cut(s)	99, 161
HpyAV	CCTTC	1 cut(s)	340
HpyCH4V	TGCA	6 cut(s)	4, 42, 53, 146, 229, 250
HpyF3I	CTNAG	1 cut(s)	305
Hsp92II	CATG	3 cut(s)	150, 169, 205
Kzo9I	GATC	1 cut(s)	19
LpnPI	CCDG	4 cut(s)	106, 153, 174, 346
Lsp1109I	GCAGC	2 cut(s)	65, 102
LweI	GCATC	1 cut(s)	102
MaeI	CTAG	1 cut(s)	183
MalI	GATC	1 cut(s)	21
MbiI	CCGCTC	1 cut(s)	70
MboI	GATC	1 cut(s)	19
MboII	GAAGA	1 cut(s)	366
MlsI	TGGCCA	1 cut(s)	170
MluCI	AATT	2 cut(s)	176, 253
MluNI	TGGCCA	1 cut(s)	170
MnlI	CCTC	6 cut(s)	68, 95, 104, 198, 209, 350
Mox20I	TGGCCA	1 cut(s)	170
MscI	TGGCCA	1 cut(s)	170
MseI	TTAA	1 cut(s)	312
Msp20I	TGGCCA	1 cut(s)	170
MspI	CCGG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	141
NciI	CCSGG	1 cut(s)	141
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	3 cut(s)	150, 169, 205
NlaIV	GGNNCC	1 cut(s)	66
NspI	RCATGY	1 cut(s)	150
PfeI	GAWTC	1 cut(s)	283
PkrI	GCNGC	2 cut(s)	55, 92
PspN4I	GGNNCC	1 cut(s)	66
PstI	CTGCAG	1 cut(s)	55
RsaI	GTAC	1 cut(s)	188
RsaNI	GTAC	1 cut(s)	187
SaqAI	TTAA	1 cut(s)	312
SatI	GCNGC	2 cut(s)	54, 91
Sau3AI	GATC	1 cut(s)	19
ScrFI	CCNGG	1 cut(s)	141
SetI	ASST	4 cut(s)	37, 58, 106, 188
SfaNI	GCATC	1 cut(s)	102
SfcI	CTRYAG	1 cut(s)	51
SmlI	CTYRAG	2 cut(s)	57, 97
SmoI	CTYRAG	2 cut(s)	57, 97
Sse9I	AATT	2 cut(s)	176, 253
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	1 cut(s)	183
StyD4I	CCNGG	1 cut(s)	139
TasI	AATT	2 cut(s)	176, 253
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TseI	GCWGC	2 cut(s)	53, 90
XceI	RCATGY	1 cut(s)	150
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.