Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0004684

Physical Location & Seq

Genomic Coordinates Forward (+)

31625341 .. 31625882

Gene Structure 542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1236200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGACCCAGGTGAGCAAAATCTGCAGCAATGAAGCTCAAAGCATCAACCTTTTTCCCAATGTTTCCAAACCCCAAATACCCAAATCCTCAAATTTAAAGTCACATTTTCTGGGTTCCTCAAATTCTTTGAGTTTGAAGCTGAAATATGGGTTTGCGGGCAGTTTTACGGTCGGTAAATTCAGGGTCGATCCCCTTAGAATTGCAGCTTCAGTTGCCACGGCAGAGAAGCCGTTGACAGTTTTGGAGATTGTGCTGCAACCCATTGAAGAAATCTCCGGCACCATAAAGTTGCCGGGTTCCAAGTCTTCTGGAGACTTGGTTGATGGTCTTAAGCAGCTTGGTGCGGATGCTGATTTTTTTTTTCTTGGAACAAACTGCCCTCCTGTCCGCGTGATTGGAAATGGAGGCCTTCCAGGGGGGAAGGTGAAGCTCTCTGGATCAATCAGTAGTCAGTACTTGACTGGAGATCGCAGGAAGCTTTTACATGCCGTGAGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003866 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009423 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046417 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

EPSP_synthase

Protein Analysis

167

Amino Acids

17.53

Weight (kDa)

9.81

Isoelectric Point (pI)

23.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48860 AT1G48860 AT2G45300 AT2G45300 AT2G45300 AT2G45300
fragaria_vesca	FvH4_7g11530 FvH4_7g11530
malus_domestica	MD02G1207300.v1.1 MD02G1207500.v1.1 MD07G1119600.v1.1 MD10G1038600.v1.1 MD14G1236200.v1.1
prunus_persica	Prupe.2G143700_v2.0.a1
pyrus_communis	pycom02g16870 pycom04g13590 pycom06g15290 pycom07g10510
rosa_chinensis	RchiOBHm_Chr1g0349971
rosa_laevigata	RLG00000028512
rosa_multiflora	Rmu_sc0000778.1_g000001 Rmu_sc0005220.1_g000012 Rmu_sc0039385.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305240
rosa_rugosa	Rorug01G0207400 Rorug01G0207500
rosa_samantha	Rh1AG224000 Rh1BG191200 Rh1CG208700 Rh1DG219800
rosa_wichuraiana	Rw0G007590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	278
AccII	CGCG	1 cut(s)	390
AciI	CCGC	3 cut(s)	155, 344, 388
AclWI	GGATC	2 cut(s)	182, 445
AcsI	RAATTY	3 cut(s)	91, 121, 176
AcuI	CTGAAG	1 cut(s)	192
AfaI	GTAC	1 cut(s)	455
AfiI	CCNNNNNNNGG	1 cut(s)	415
AflII	CTTAAG	1 cut(s)	329
AgsI	TTSAA	2 cut(s)	136, 266
AjnI	CCWGG	2 cut(s)	6, 412
AluBI	AGCT	6 cut(s)	35, 139, 206, 337, 430, 478
AluI	AGCT	6 cut(s)	35, 139, 206, 337, 430, 478
Alw26I	GTCTC	1 cut(s)	306
AlwI	GGATC	2 cut(s)	182, 445
AoxI	GGCC	1 cut(s)	406
ApeKI	GCWGC	4 cut(s)	24, 203, 253, 334
ApoI	RAATTY	3 cut(s)	91, 121, 176
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
AsuC2I	CCSGG	1 cut(s)	294
AsuHPI	GGTGA	2 cut(s)	22, 436
BanI	GGYRCC	1 cut(s)	278
BbsI	GAAGAC	1 cut(s)	297
BbvI	GCAGC	4 cut(s)	36, 215, 240, 346
BccI	CCATC	1 cut(s)	317
BceAI	ACGGC	3 cut(s)	214, 234, 473
BciT130I	CCWGG	2 cut(s)	8, 414
BcnI	CCSGG	1 cut(s)	294
BcoDI	GTCTC	1 cut(s)	306
BfmI	CTRYAG	1 cut(s)	22
BfrI	CTTAAG	1 cut(s)	329
BisI	GCNGC	4 cut(s)	25, 204, 254, 335
BlsI	GCNGC	4 cut(s)	26, 205, 255, 336
BmcAI	AGTACT	1 cut(s)	455
Bme1390I	CCNGG	3 cut(s)	8, 294, 414
BmiI	GGNNCC	3 cut(s)	115, 280, 298
BmrFI	CCNGG	3 cut(s)	8, 294, 414
BmsI	GCATC	2 cut(s)	51, 337
BpiI	GAAGAC	1 cut(s)	297
BpmI	CTGGAG	2 cut(s)	330, 483
BpuMI	CCSGG	1 cut(s)	294
BsaJI	CCNNGG	3 cut(s)	6, 216, 413
BsaXI	ACNNNNNCTCC	2 cut(s)	303, 333
Bsc4I	CCNNNNNNNGG	1 cut(s)	415
Bse1I	ACTGG	1 cut(s)	466
Bse3DI	GCAATG	1 cut(s)	34
BseBI	CCWGG	2 cut(s)	8, 414
BseDI	CCNNGG	3 cut(s)	6, 216, 413
BseGI	GGATG	1 cut(s)	352
BseLI	CCNNNNNNNGG	1 cut(s)	415
BseMI	GCAATG	1 cut(s)	34
BseNI	ACTGG	1 cut(s)	466
BseXI	GCAGC	4 cut(s)	36, 215, 240, 346
Bsh1236I	CGCG	1 cut(s)	390
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	1 cut(s)	408
BshNI	GGYRCC	1 cut(s)	278
BsiEI	CGRYCG	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	276, 293
BslI	CCNNNNNNNGG	1 cut(s)	415
BsmAI	GTCTC	1 cut(s)	306
BsnI	GGCC	1 cut(s)	408
Bsp143I	GATC	3 cut(s)	187, 437, 466
BspACI	CCGC	3 cut(s)	155, 344, 388
BspANI	GGCC	1 cut(s)	408
BspFNI	CGCG	1 cut(s)	390
BspLI	GGNNCC	3 cut(s)	115, 280, 298
BspMAI	CTGCAG	1 cut(s)	26
BspPI	GGATC	2 cut(s)	182, 445
BspT107I	GGYRCC	1 cut(s)	278
BspTI	CTTAAG	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	466
BssECI	CCNNGG	3 cut(s)	6, 216, 413
BssMI	GATC	3 cut(s)	187, 437, 466
Bst2UI	CCWGG	2 cut(s)	8, 414
Bst4CI	ACNGT	2 cut(s)	169, 238
BstAFI	CTTAAG	1 cut(s)	329
BstAPI	GCANNNNNTGC	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	157
BstDEI	CTNAG	1 cut(s)	194
BstDSI	CCRYGG	1 cut(s)	216
BstF5I	GGATG	1 cut(s)	352
BstFNI	CGCG	1 cut(s)	390
BstKTI	GATC	3 cut(s)	190, 440, 469
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	3 cut(s)	187, 437, 466
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	2 cut(s)	21, 212
BstNI	CCWGG	2 cut(s)	8, 414
BstNSI	RCATGY	1 cut(s)	488
BstSCI	CCNGG	3 cut(s)	6, 292, 412
BstSFI	CTRYAG	1 cut(s)	22
BstUI	CGCG	1 cut(s)	390
BstV1I	GCAGC	4 cut(s)	36, 215, 240, 346
BstV2I	GAAGAC	1 cut(s)	297
BsuRI	GGCC	1 cut(s)	408
BtgI	CCRYGG	1 cut(s)	216
BtsCI	GGATG	1 cut(s)	352
Cac8I	GCNNGC	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	1 cut(s)	485
CviJI	RGCY	8 cut(s)	35, 139, 206, 229, 337, 408, 430, 478
CviKI_1	RGCY	8 cut(s)	35, 139, 206, 229, 337, 408, 430, 478
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	1 cut(s)	194
DpnI	GATC	3 cut(s)	189, 439, 468
DpnII	GATC	3 cut(s)	187, 437, 466
DraI	TTTAAA	1 cut(s)	96
Eco147I	AGGCCT	1 cut(s)	408
Eco57I	CTGAAG	1 cut(s)	192
EcoRII	CCWGG	2 cut(s)	6, 412
FaeI	CATG	1 cut(s)	488
FaiI	YATR	3 cut(s)	147, 284, 486
FatI	CATG	1 cut(s)	484
FauI	CCCGC	1 cut(s)	148
Fnu4HI	GCNGC	4 cut(s)	25, 204, 254, 335
FokI	GGATG	1 cut(s)	359
Fsp4HI	GCNGC	4 cut(s)	25, 204, 254, 335
GluI	GCNGC	4 cut(s)	25, 204, 254, 335
GsuI	CTGGAG	2 cut(s)	330, 483
HaeIII	GGCC	1 cut(s)	408
HapII	CCGG	2 cut(s)	276, 293
Hin1II	CATG	1 cut(s)	488
HincII	GTYRAC	1 cut(s)	234
HindII	GTYRAC	1 cut(s)	234
HindIII	AAGCTT	1 cut(s)	476
HpaII	CCGG	2 cut(s)	276, 293
HphI	GGTGA	2 cut(s)	22, 436
Hpy166II	GTNNAC	1 cut(s)	234
Hpy188III	TCNNGA	2 cut(s)	309, 435
Hpy8I	GTNNAC	1 cut(s)	234
HpyAV	CCTTC	2 cut(s)	415, 419
HpyCH4III	ACNGT	2 cut(s)	169, 238
HpyCH4V	TGCA	3 cut(s)	24, 203, 256
HpyF10VI	GCNNNNNNNGC	2 cut(s)	21, 212
HpyF3I	CTNAG	1 cut(s)	194
Hsp92II	CATG	1 cut(s)	488
Kzo9I	GATC	3 cut(s)	187, 437, 466
Lsp1109I	GCAGC	4 cut(s)	36, 215, 240, 346
LweI	GCATC	2 cut(s)	51, 337
MaeIII	GTNAC	1 cut(s)	99
MalI	GATC	3 cut(s)	189, 439, 468
MboI	GATC	3 cut(s)	187, 437, 466
MboII	GAAGA	2 cut(s)	278, 297
MluCI	AATT	4 cut(s)	91, 121, 176, 198
MnlI	CCTC	5 cut(s)	97, 127, 390, 398, 488
MseI	TTAA	2 cut(s)	95, 330
MspCI	CTTAAG	1 cut(s)	329
MspI	CCGG	2 cut(s)	276, 293
MspR9I	CCNGG	3 cut(s)	8, 294, 414
MvaI	CCWGG	2 cut(s)	8, 414
MvnI	CGCG	1 cut(s)	390
MwoI	GCNNNNNNNGC	2 cut(s)	21, 212
NciI	CCSGG	1 cut(s)	294
NdeII	GATC	3 cut(s)	187, 437, 466
NlaIII	CATG	1 cut(s)	488
NlaIV	GGNNCC	3 cut(s)	115, 280, 298
NmuCI	GTSAC	1 cut(s)	99
NspI	RCATGY	1 cut(s)	488
PceI	AGGCCT	1 cut(s)	408
PkrI	GCNGC	4 cut(s)	26, 205, 255, 336
Psp6I	CCWGG	2 cut(s)	6, 412
PspGI	CCWGG	2 cut(s)	6, 412
PspN4I	GGNNCC	3 cut(s)	115, 280, 298
PstI	CTGCAG	1 cut(s)	26
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SaqAI	TTAA	2 cut(s)	95, 330
SatI	GCNGC	4 cut(s)	25, 204, 254, 335
Sau3AI	GATC	3 cut(s)	187, 437, 466
ScaI	AGTACT	1 cut(s)	455
ScrFI	CCNGG	3 cut(s)	8, 294, 414
SetI	ASST	9 cut(s)	12, 37, 51, 141, 208, 339, 426, 432, 480
SfaNI	GCATC	2 cut(s)	51, 337
SfcI	CTRYAG	1 cut(s)	22
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	4 cut(s)	91, 121, 176, 198
SseBI	AGGCCT	1 cut(s)	408
SsiI	CCGC	3 cut(s)	155, 344, 388
StuI	AGGCCT	1 cut(s)	408
StyD4I	CCNGG	3 cut(s)	6, 292, 412
TaaI	ACNGT	2 cut(s)	169, 238
TaqI	TCGA	1 cut(s)	186
TasI	AATT	4 cut(s)	91, 121, 176, 198
TatI	WGTACW	1 cut(s)	453
Tru1I	TTAA	2 cut(s)	95, 330
Tru9I	TTAA	2 cut(s)	95, 330
TseFI	GTSAC	1 cut(s)	99
TseI	GCWGC	4 cut(s)	24, 203, 253, 334
Tsp45I	GTSAC	1 cut(s)	99
TspDTI	ATGAA	1 cut(s)	45
Vha464I	CTTAAG	1 cut(s)	329
XapI	RAATTY	3 cut(s)	91, 121, 176
XceI	RCATGY	1 cut(s)	488
ZrmI	AGTACT	1 cut(s)	455

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.