Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004684

Physical Location & Seq

Genomic Coordinates Forward (+)

42578259 .. 42583299

Gene Structure 5041 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG224000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGCCCAAGTGAGCAAAATCTGCGGCAATGGAGCTCAAAGCATCAATCTTTTGCCCAATGTCTCCAAACCCCAGATACCCAAATCGTTAAATTCAATCTCTTTGAAGTCACAGTTTTTGGGTTCCTCAAATTCTGTGAGTTTGAAGATGAAAAATGGGTTTGTGGGTGGTAAAGCTAGGGCTGGTGGGCTTAGAGTTTCGGCTTCAGTTGTTACAGCAGAGAAGCCGTCGACGGTGCCGGAGATTGTGTTGCAACCCATCAAAGAAATTTCGGGTACCATAACTTTGCCGGGTTCTAAGTCCTTGTCCAATCGGATTCTGCTTATTGCTGCTCTTTCTGAGGGAACAACTGTTGTAGACAACTTACTAGATAGTGATGATATCAATTATATGCTTGGTGCGTTGAAAACACTTGGGCTAAATGTGGAAGATGACAAGGCAAACAAAAGAGCTGTTGTGGAGGGTTGTGGCGGTCAGTTTCCTATGGGGAATAAATCCGGAGAGGAAGTTCAACTTTTCCTTGGAAATGCTGGAACAGCAATGAGGCCGTTGACTGCGGCAGTAACTGCTGCTGGTGGACATTCTAGGTATGTACTTGATGGGGTGCCCCGAATGAGGGAGAGACCAATTGGAGATTTGGTCACTGGTCTTAAGCAGCTTGGTGCAGATGTTGACTGTTTTCTTGGAACAGATTGTCCTCCTGTTCGTGTAATTGGAAAGGGAGGCCTTCCAGGAGGCAAGGTGAAACTCTCTGGATCAATCAGTAGTCAATATTTGACTTCTTTGCTTATGGCGGCTCCTTTGGCTCTGGGAGATGTTGAAGTTGAGATTATTGATAAGCTGATTTCCATACCATATGTTGAAATGACTTTGAAATTGATGGAACGCTTTGGGGTCACAGTGGAACATAGTGATAGCTGGGATCGATTTTTGGTCCGAGGAGGTCAAAAATACAAGTCTCCTGGAAAAGCCTTTGTCGAAGGTGATGCTTCAAGTGCTAGTTACTTTCTAGCTGGTGCTGCAGTAACGGGTGGAACTGTAACTGTTGAAGGCTGTGGCACAAGCAGTTTACAGGTATTTTGCACAGACCAACATATGTTTAATTCTGCCCACTTTCCAGTCTATTCCTGTAAACTTTTTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003866 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009423 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046417 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

EPSP_synthase

Protein Analysis

381

Amino Acids

39.92

Weight (kDa)

8.57

Isoelectric Point (pI)

26.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EPSP_synthase	PF00275	85 - 358	5.1e-83	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48860 AT1G48860 AT2G45300 AT2G45300 AT2G45300 AT2G45300
fragaria_vesca	FvH4_7g11530 FvH4_7g11530
malus_domestica	MD02G1207300.v1.1 MD02G1207500.v1.1 MD07G1119600.v1.1 MD10G1038600.v1.1 MD14G1236200.v1.1
prunus_persica	Prupe.2G143700_v2.0.a1
pyrus_communis	pycom02g16870 pycom04g13590 pycom06g15290 pycom07g10510
rosa_chinensis	RchiOBHm_Chr1g0349971
rosa_laevigata	RLG00000028512
rosa_multiflora	Rmu_sc0000778.1_g000001 Rmu_sc0005220.1_g000012 Rmu_sc0039385.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305240
rosa_rugosa	Rorug01G0207400 Rorug01G0207500
rosa_samantha	Rh1AG224000 Rh1BG191200 Rh1CG208700 Rh1DG219800
rosa_wichuraiana	Rw0G007590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	275
AccB1I	GGYRCC	3 cut(s)	235, 275, 604
AccI	GTMKAC	2 cut(s)	230, 357
AccIII	TCCGGA	1 cut(s)	497
AciI	CCGC	4 cut(s)	24, 471, 557, 794
AclWI	GGATC	2 cut(s)	763, 930
AcsI	RAATTY	3 cut(s)	91, 130, 267
AcuI	CTGAAG	1 cut(s)	189
AfaI	GTAC	2 cut(s)	277, 594
AfiI	CCNNNNNNNGG	2 cut(s)	615, 616
AflII	CTTAAG	1 cut(s)	650
AjnI	CCWGG	2 cut(s)	730, 961
AloI	GAACNNNNNNTCC	4 cut(s)	492, 524, 679, 711
AluBI	AGCT	7 cut(s)	35, 176, 452, 658, 841, 918, 1013
AluI	AGCT	7 cut(s)	35, 176, 452, 658, 841, 918, 1013
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	3 cut(s)	67, 616, 963
AlwI	GGATC	2 cut(s)	763, 930
AlwNI	CAGNNNCTG	1 cut(s)	566
Aor13HI	TCCGGA	1 cut(s)	497
AoxI	GGCC	3 cut(s)	3, 545, 724
ApeKI	GCWGC	4 cut(s)	329, 569, 655, 1019
ApoI	RAATTY	3 cut(s)	91, 130, 267
Asp718I	GGTACC	1 cut(s)	275
AspS9I	GGNCC	2 cut(s)	4, 934
AsuC2I	CCSGG	1 cut(s)	291
AsuHPI	GGTGA	2 cut(s)	754, 995
AvaII	GGWCC	1 cut(s)	934
BaeGI	GKGCMC	1 cut(s)	609
BanI	GGYRCC	3 cut(s)	235, 275, 604
BanII	GRGCYC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	4 cut(s)	316, 556, 667, 1006
BccI	CCATC	3 cut(s)	266, 593, 874
BceAI	ACGGC	2 cut(s)	211, 532
BcgI	CGANNNNNNTGC	2 cut(s)	968, 1002
BciT130I	CCWGG	2 cut(s)	732, 963
BcnI	CCSGG	1 cut(s)	291
BcoDI	GTCTC	3 cut(s)	67, 616, 963
BfaI	CTAG	5 cut(s)	177, 368, 585, 999, 1010
BfmI	CTRYAG	1 cut(s)	1020
BfrI	CTTAAG	1 cut(s)	650
BisI	GCNGC	7 cut(s)	25, 330, 558, 570, 656, 795, 1020
BlsI	GCNGC	7 cut(s)	26, 331, 559, 571, 657, 796, 1021
Bme1390I	CCNGG	3 cut(s)	291, 732, 963
Bme18I	GGWCC	1 cut(s)	934
BmgT120I	GGNCC	2 cut(s)	4, 934
BmiI	GGNNCC	5 cut(s)	124, 237, 277, 606, 798
BmrFI	CCNGG	3 cut(s)	291, 732, 963
BmsI	GCATC	2 cut(s)	51, 976
BpuMI	CCSGG	1 cut(s)	291
Bsa29I	ATCGAT	1 cut(s)	925
BsaI	GGTCTC	1 cut(s)	616
BsaJI	CCNNGG	2 cut(s)	520, 937
BsaWI	WCCGGW	1 cut(s)	497
BsaXI	ACNNNNNCTCC	8 cut(s)	233, 263, 492, 522, 624, 654, 726, 756
Bsc4I	CCNNNNNNNGG	2 cut(s)	615, 616
Bse1I	ACTGG	2 cut(s)	649, 1118
Bse3DI	GCAATG	2 cut(s)	34, 546
BseAI	TCCGGA	1 cut(s)	497
BseBI	CCWGG	2 cut(s)	732, 963
BseCI	ATCGAT	1 cut(s)	925
BseDI	CCNNGG	2 cut(s)	520, 937
BseLI	CCNNNNNNNGG	2 cut(s)	615, 616
BseMI	GCAATG	2 cut(s)	34, 546
BseMII	CTCAG	1 cut(s)	330
BseNI	ACTGG	2 cut(s)	649, 1118
BseRI	GAGGAG	1 cut(s)	954
BseSI	GKGCMC	1 cut(s)	609
BseXI	GCAGC	4 cut(s)	316, 556, 667, 1006
BseYI	CCCAGC	1 cut(s)	918
BsgI	GTGCAG	1 cut(s)	684
BshFI	GGCC	3 cut(s)	5, 547, 726
BshNI	GGYRCC	3 cut(s)	235, 275, 604
BshVI	ATCGAT	1 cut(s)	925
BsiHKAI	GWGCWC	1 cut(s)	37
BsiSI	CCGG	3 cut(s)	239, 290, 498
BslI	CCNNNNNNNGG	2 cut(s)	615, 616
BsmAI	GTCTC	3 cut(s)	67, 616, 963
BsnI	GGCC	3 cut(s)	5, 547, 726
Bso31I	GGTCTC	1 cut(s)	616
Bsp1286I	GDGCHC	2 cut(s)	37, 609
Bsp13I	TCCGGA	1 cut(s)	497
Bsp143I	GATC	2 cut(s)	755, 922
BspACI	CCGC	4 cut(s)	24, 471, 557, 794
BspANI	GGCC	3 cut(s)	5, 547, 726
BspCNI	CTCAG	1 cut(s)	331
BspDI	ATCGAT	1 cut(s)	925
BspEI	TCCGGA	1 cut(s)	497
BspLI	GGNNCC	5 cut(s)	124, 237, 277, 606, 798
BspMAI	CTGCAG	1 cut(s)	1024
BspPI	GGATC	2 cut(s)	763, 930
BspT107I	GGYRCC	3 cut(s)	235, 275, 604
BspTI	CTTAAG	1 cut(s)	650
BspTNI	GGTCTC	1 cut(s)	616
BsrDI	GCAATG	2 cut(s)	34, 546
BsrI	ACTGG	2 cut(s)	649, 1118
BssECI	CCNNGG	2 cut(s)	520, 937
BssMI	GATC	2 cut(s)	755, 922
BssT1I	CCWWGG	1 cut(s)	520
Bst2UI	CCWGG	2 cut(s)	732, 963
Bst4CI	ACNGT	7 cut(s)	114, 235, 352, 677, 901, 1039, 1045
BstAFI	CTTAAG	1 cut(s)	650
BstAPI	GCANNNNNTGC	2 cut(s)	21, 566
BstDEI	CTNAG	3 cut(s)	191, 297, 339
BstKTI	GATC	2 cut(s)	758, 925
BstMAI	GTCTC	3 cut(s)	67, 616, 963
BstMBI	GATC	2 cut(s)	755, 922
BstMWI	GCNNNNNNNGC	6 cut(s)	21, 536, 566, 803, 995, 1019
BstNI	CCWGG	2 cut(s)	732, 963
BstSCI	CCNGG	3 cut(s)	289, 730, 961
BstSFI	CTRYAG	1 cut(s)	1020
BstSLI	GKGCMC	1 cut(s)	609
BstV1I	GCAGC	4 cut(s)	316, 556, 667, 1006
Bsu15I	ATCGAT	1 cut(s)	925
BsuRI	GGCC	3 cut(s)	5, 547, 726
BsuTUI	ATCGAT	1 cut(s)	925
BtsIMutI	CAGTG	2 cut(s)	642, 906
CaiI	CAGNNNCTG	1 cut(s)	566
Cfr13I	GGNCC	2 cut(s)	4, 934
ClaI	ATCGAT	1 cut(s)	925
Csp6I	GTAC	2 cut(s)	276, 593
CviQI	GTAC	2 cut(s)	276, 593
DdeI	CTNAG	3 cut(s)	191, 297, 339
DpnI	GATC	2 cut(s)	757, 924
DpnII	GATC	2 cut(s)	755, 922
Ecl136II	GAGCTC	1 cut(s)	35
Eco130I	CCWWGG	1 cut(s)	520
Eco147I	AGGCCT	1 cut(s)	726
Eco24I	GRGCYC	1 cut(s)	37
Eco31I	GGTCTC	1 cut(s)	616
Eco32I	GATATC	1 cut(s)	382
Eco47I	GGWCC	1 cut(s)	934
Eco53kI	GAGCTC	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	189
EcoICRI	GAGCTC	1 cut(s)	35
EcoRII	CCWGG	2 cut(s)	730, 961
EcoRV	GATATC	1 cut(s)	382
EcoT14I	CCWWGG	1 cut(s)	520
EcoT38I	GRGCYC	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	520
FalI	AAGNNNNNCTT	2 cut(s)	498, 530
FauNDI	CATATG	2 cut(s)	856, 1095
FblI	GTMKAC	2 cut(s)	230, 357
Fnu4HI	GCNGC	7 cut(s)	25, 330, 558, 570, 656, 795, 1020
FriOI	GRGCYC	1 cut(s)	37
Fsp4HI	GCNGC	7 cut(s)	25, 330, 558, 570, 656, 795, 1020
FspBI	CTAG	5 cut(s)	177, 368, 585, 999, 1010
GluI	GCNGC	7 cut(s)	25, 330, 558, 570, 656, 795, 1020
GsaI	CCCAGC	1 cut(s)	922
HaeIII	GGCC	3 cut(s)	5, 547, 726
HapII	CCGG	3 cut(s)	239, 290, 498
HincII	GTYRAC	3 cut(s)	231, 552, 673
HindII	GTYRAC	3 cut(s)	231, 552, 673
HinfI	GANTC	1 cut(s)	316
HpaII	CCGG	3 cut(s)	239, 290, 498
HphI	GGTGA	2 cut(s)	754, 995
Hpy166II	GTNNAC	7 cut(s)	231, 358, 552, 578, 673, 1070, 1133
Hpy188I	TCNGA	3 cut(s)	315, 340, 938
Hpy188III	TCNNGA	2 cut(s)	498, 753
Hpy8I	GTNNAC	7 cut(s)	231, 358, 552, 578, 673, 1070, 1133
Hpy99I	CGWCG	2 cut(s)	232, 235
HpyAV	CCTTC	3 cut(s)	737, 974, 1043
HpyCH4III	ACNGT	7 cut(s)	114, 235, 352, 677, 901, 1039, 1045
HpyCH4V	TGCA	4 cut(s)	253, 665, 1022, 1083
HpyF10VI	GCNNNNNNNGC	6 cut(s)	21, 536, 566, 803, 995, 1019
HpyF3I	CTNAG	3 cut(s)	191, 297, 339
Kpn2I	TCCGGA	1 cut(s)	497
KpnI	GGTACC	1 cut(s)	279
Kzo9I	GATC	2 cut(s)	755, 922
LmnI	GCTCC	2 cut(s)	32, 802
Lsp1109I	GCAGC	4 cut(s)	316, 556, 667, 1006
LweI	GCATC	2 cut(s)	51, 976
MaeI	CTAG	5 cut(s)	177, 368, 585, 999, 1010
MaeIII	GTNAC	8 cut(s)	108, 211, 562, 640, 895, 1001, 1024, 1039
MalI	GATC	2 cut(s)	757, 924
MboI	GATC	2 cut(s)	755, 922
MboII	GAAGA	2 cut(s)	157, 440
MfeI	CAATTG	1 cut(s)	627
MhlI	GDGCHC	2 cut(s)	37, 609
MluCI	AATT	8 cut(s)	91, 130, 267, 385, 627, 711, 875, 1102
MroI	TCCGGA	1 cut(s)	497
MseI	TTAA	3 cut(s)	89, 651, 1101
MspCI	CTTAAG	1 cut(s)	650
MspI	CCGG	3 cut(s)	239, 290, 498
MspR9I	CCNGG	3 cut(s)	291, 732, 963
MunI	CAATTG	1 cut(s)	627
MvaI	CCWGG	2 cut(s)	732, 963
MwoI	GCNNNNNNNGC	6 cut(s)	21, 536, 566, 803, 995, 1019
NciI	CCSGG	1 cut(s)	291
NdeI	CATATG	2 cut(s)	856, 1095
NdeII	GATC	2 cut(s)	755, 922
NlaIV	GGNNCC	5 cut(s)	124, 237, 277, 606, 798
NmuCI	GTSAC	3 cut(s)	108, 640, 895
PceI	AGGCCT	1 cut(s)	726
PfeI	GAWTC	1 cut(s)	316
PfoI	TCCNGGA	2 cut(s)	730, 961
PkrI	GCNGC	7 cut(s)	26, 331, 559, 571, 657, 796, 1021
Psp124BI	GAGCTC	1 cut(s)	37
Psp6I	CCWGG	2 cut(s)	730, 961
PspFI	CCCAGC	1 cut(s)	918
PspGI	CCWGG	2 cut(s)	730, 961
PspN4I	GGNNCC	5 cut(s)	124, 237, 277, 606, 798
PspPI	GGNCC	2 cut(s)	4, 934
PstI	CTGCAG	1 cut(s)	1024
PstNI	CAGNNNCTG	1 cut(s)	566
RsaI	GTAC	2 cut(s)	277, 594
RsaNI	GTAC	2 cut(s)	276, 593
SacI	GAGCTC	1 cut(s)	37
SalI	GTCGAC	1 cut(s)	229
SaqAI	TTAA	3 cut(s)	89, 651, 1101
SatI	GCNGC	7 cut(s)	25, 330, 558, 570, 656, 795, 1020
Sau3AI	GATC	2 cut(s)	755, 922
Sau96I	GGNCC	2 cut(s)	4, 934
ScrFI	CCNGG	3 cut(s)	291, 732, 963
SduI	GDGCHC	2 cut(s)	37, 609
SfaNI	GCATC	2 cut(s)	51, 976
SfcI	CTRYAG	1 cut(s)	1020
SgrDI	CGTCGACG	1 cut(s)	229
SinI	GGWCC	1 cut(s)	934
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
Sse9I	AATT	8 cut(s)	91, 130, 267, 385, 627, 711, 875, 1102
SseBI	AGGCCT	1 cut(s)	726
SsiI	CCGC	4 cut(s)	24, 471, 557, 794
SspI	AATATT	1 cut(s)	773
SspMI	CTAG	5 cut(s)	177, 368, 585, 999, 1010
SstI	GAGCTC	1 cut(s)	37
StuI	AGGCCT	1 cut(s)	726
StyD4I	CCNGG	3 cut(s)	289, 730, 961
StyI	CCWWGG	1 cut(s)	520
TaaI	ACNGT	7 cut(s)	114, 235, 352, 677, 901, 1039, 1045
TaqI	TCGA	3 cut(s)	230, 925, 978
TasI	AATT	8 cut(s)	91, 130, 267, 385, 627, 711, 875, 1102
TatI	WGTACW	1 cut(s)	592
TauI	GCSGC	3 cut(s)	27, 560, 797
TfiI	GAWTC	1 cut(s)	316
Tru1I	TTAA	3 cut(s)	89, 651, 1101
Tru9I	TTAA	3 cut(s)	89, 651, 1101
TscAI	CASTG	2 cut(s)	649, 906
TseFI	GTSAC	3 cut(s)	108, 640, 895
TseI	GCWGC	4 cut(s)	329, 569, 655, 1019
Tsp45I	GTSAC	3 cut(s)	108, 640, 895
TspDTI	ATGAA	1 cut(s)	164
TspRI	CASTG	2 cut(s)	649, 906
Vha464I	CTTAAG	1 cut(s)	650
VpaK11BI	GGWCC	1 cut(s)	934
XapI	RAATTY	3 cut(s)	91, 130, 267
XmiI	GTMKAC	2 cut(s)	230, 357
XspI	CTAG	5 cut(s)	177, 368, 585, 999, 1010

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.