AT2G45440

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012325
Physical Location & Seq
Forward (+)
18730840 .. 18733119
2280 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G45440.1

Sequence Viewer

Length: 1098 bp
ATGGCTGCTTTGAAAGGTTATGGCTTGTGTTCTATGGACTCTGCTCTTCAATTCCCCTGTCCTAAGCTATTCAATAGCTACAAGAGAAGGAGCTCGAAATGGGTCTCTCCCAAAGCAGCTGTTGTACCCAATTTCCATCTCCCAATGCGCAGCTTGGAGGTTAAAAACAGGACAAACACAGACGACATTAAAGCTCTACGTGTGATCACAGCTATCAAAACACCGTATCTACCTGATGGAAGATTCGACCTTGAAGCCTACGATGACTTGGTCAACATTCAGATACAAAACGGTGCTGAAGGTGTCATTGTTGGTGGTACAACTGGTGAAGGACAACTGATGAGCTGGGACGAACACATTATGCTTATAGGCCATACCGTTAACTGTTTTGGCGGAAGCATCAAAGTCATTGGAAACACTGGAAGCAATTCGACTAGAGAAGCAATCCACGCGACTGAACAAGGATTCGCGGTTGGAATGCATGCTGCTCTTCATATAAACCCTTACTATGGCAAGACTTCTATTGAGGGACTGATTGCACATTTCCAGTCTGTTCTTCATATGGGACCGACGATTATATACAATGTGCCTGGTCGAACAGGGCAAGATATACCGCCTCGTGCCATCTTCAAACTTTCTCAGAATCCGAATTTAGCTGGTGTGAAGGAATGTGTTGGGAACAAGCGAGTCGAAGAGTACACTGAGAATGGGGTTGTTGTGTGGAGTGGGAATGATGATGAGTGTCATGATTCCAGATGGGATTATGGAGCAACAGGAGTTATATCAGTTACTAGTAATTTAGTTCCGGGTTTGATGAGGAAGTTGATGTTTGAAGGTAGGAATTCATCTTTGAACTCAAAGCTTCTACCTTTGATGGCTTGGCTGTTCCACGAGCCAAACCCGATTGGAATCAACACTGCTTTGGCTCAGCTTGGAGTTTCGAGGCCGGTTTTTAGGTTACCATATGTACCATTGCCACTGTCTAAGAGGCTTGAGTTTGTGAAACTGGTGAAGGAGATTGGACGAGAGCATTTTGTGGGTGAGAAAGATGTTCAGGCTCTTGATGATGATGATTTTATCCTTATCGGTCGATATTAG

Protein Analysis

365

Amino Acids

40.29

Weight (kDa)

7.17

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHDPS PF00701 66 - 339 3.1e-95 Dihydrodipicolinate synthetase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012325)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45440 AT3G60880 AT3G60880
fragaria_vesca FvH4_7g12060
malus_domestica MD02G1201600.v1.1
prunus_persica Prupe.2G147200_v2.0.a1
pyrus_communis pycom02g16500
rosa_chinensis RchiOBHm_Chr1g0350811 RchiOBHm_Chr7g0217051
rosa_laevigata RLG00000028454
rosa_multiflora Rmu_co8411727.1_g000001 Rmu_sc0006200.1_g000005 Rmu_sc0008591.1_g000006
rosa_roxburghii Rroxscaffold_4G00304500
rosa_rugosa Rorug01G0214100
rosa_samantha Rh1BG198700 Rh1CG213500 Rh1DG226600
rosa_wichuraiana Rw1G019790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 149
AccII CGCG 2 cut(s) 452, 470
AciI CCGC 3 cut(s) 393, 470, 614
AcsI RAATTY 2 cut(s) 649, 841
AcuI CTGAAG 1 cut(s) 318
AfaI GTAC 4 cut(s) 126, 319, 698, 969
AfiI CCNNNNNNNGG 1 cut(s) 509
AflIII ACRYGT 1 cut(s) 199
AgsI TTSAA 7 cut(s) 13, 50, 73, 254, 631, 833, 853
AhlI ACTAGT 1 cut(s) 791
AjnI CCWGG 1 cut(s) 589
Alw21I GWGCWC 1 cut(s) 95
Alw26I GTCTC 1 cut(s) 109
AoxI GGCC 2 cut(s) 370, 944
ApeKI GCWGC 4 cut(s) 5, 116, 150, 485
ApoI RAATTY 2 cut(s) 649, 841
Asp700I GAANNNNTTC 1 cut(s) 427
AspLEI GCGC 1 cut(s) 150
AspS9I GGNCC 1 cut(s) 566
AsuC2I CCSGG 1 cut(s) 807
AsuHPI GGTGA 3 cut(s) 338, 1021, 1052
AvaII GGWCC 1 cut(s) 566
BanII GRGCYC 1 cut(s) 95
BauI CACGAG 2 cut(s) 618, 890
Bbv12I GWGCWC 1 cut(s) 95
BbvI GCAGC 3 cut(s) 128, 162, 472
BccI CCATC 5 cut(s) 144, 230, 632, 750, 868
BciT130I CCWGG 1 cut(s) 591
BclI TGATCA 1 cut(s) 204
BcnI CCSGG 1 cut(s) 807
BcoDI GTCTC 1 cut(s) 109
BcuI ACTAGT 1 cut(s) 791
BfaI CTAG 2 cut(s) 435, 792
BisI GCNGC 4 cut(s) 6, 117, 151, 486
BlpI GCTNAGC 1 cut(s) 927
BlsI GCNGC 4 cut(s) 7, 118, 152, 487
Bme1390I CCNGG 2 cut(s) 591, 807
Bme18I GGWCC 1 cut(s) 566
BmgT120I GGNCC 1 cut(s) 566
BmiI GGNNCC 1 cut(s) 567
BmrFI CCNGG 2 cut(s) 591, 807
BmsI GCATC 1 cut(s) 408
Bpu10I CCTNAGC 1 cut(s) 63
Bpu1102I GCTNAGC 1 cut(s) 927
BpuEI CTTGAG 1 cut(s) 1013
BpuMI CCSGG 1 cut(s) 807
BsaAI YACGTR 1 cut(s) 200
BsaBI GATNNNNATC 1 cut(s) 908
BsaI GGTCTC 1 cut(s) 109
Bsc4I CCNNNNNNNGG 1 cut(s) 509
Bse118I RCCGGY 1 cut(s) 946
Bse1I ACTGG 4 cut(s) 328, 424, 547, 1011
Bse3DI GCAATG 1 cut(s) 971
Bse8I GATNNNNATC 1 cut(s) 908
BseBI CCWGG 1 cut(s) 591
BseJI GATNNNNATC 1 cut(s) 908
BseLI CCNNNNNNNGG 1 cut(s) 509
BseMI GCAATG 1 cut(s) 971
BseMII CTCAG 3 cut(s) 653, 693, 941
BseNI ACTGG 4 cut(s) 328, 424, 547, 1011
BseXI GCAGC 3 cut(s) 128, 162, 472
BseYI CCCAGC 1 cut(s) 345
Bsh1236I CGCG 2 cut(s) 452, 470
Bsh1285I CGRYCG 1 cut(s) 1090
BshFI GGCC 2 cut(s) 372, 946
BsiEI CGRYCG 1 cut(s) 1090
BsiHKAI GWGCWC 1 cut(s) 95
BsiSI CCGG 2 cut(s) 806, 947
BslFI GGGAC 3 cut(s) 362, 543, 579
BslI CCNNNNNNNGG 1 cut(s) 509
BsmAI GTCTC 1 cut(s) 109
BsmFI GGGAC 3 cut(s) 362, 543, 579
BsmI GAATGC 1 cut(s) 483
BsnI GGCC 2 cut(s) 372, 946
Bso31I GGTCTC 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 95
Bsp143I GATC 1 cut(s) 204
Bsp1720I GCTNAGC 1 cut(s) 927
BspACI CCGC 3 cut(s) 393, 470, 614
BspANI GGCC 2 cut(s) 372, 946
BspCNI CTCAG 3 cut(s) 652, 694, 940
BspFNI CGCG 2 cut(s) 452, 470
BspHI TCATGA 1 cut(s) 745
BspLI GGNNCC 1 cut(s) 567
BspQI GCTCTTC 2 cut(s) 51, 495
BspTNI GGTCTC 1 cut(s) 109
BsrDI GCAATG 1 cut(s) 971
BsrFI RCCGGY 1 cut(s) 946
BsrI ACTGG 4 cut(s) 328, 424, 547, 1011
BssAI RCCGGY 1 cut(s) 946
BssMI GATC 1 cut(s) 204
BssSI CACGAG 2 cut(s) 618, 890
Bst2BI CACGAG 2 cut(s) 618, 890
Bst2UI CCWGG 1 cut(s) 591
Bst4CI ACNGT 5 cut(s) 225, 293, 379, 386, 981
Bst6I CTCTTC 3 cut(s) 51, 495, 687
BstBAI YACGTR 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 483
BstDEI CTNAG 5 cut(s) 63, 639, 702, 927, 984
BstEII GGTNACC 1 cut(s) 957
BstFNI CGCG 2 cut(s) 452, 470
BstHHI GCGC 1 cut(s) 150
BstKTI GATC 1 cut(s) 207
BstMAI GTCTC 1 cut(s) 109
BstMBI GATC 1 cut(s) 204
BstMCI CGRYCG 1 cut(s) 1090
BstMWI GCNNNNNNNGC 1 cut(s) 449
BstNI CCWGG 1 cut(s) 591
BstNSI RCATGY 1 cut(s) 485
BstPI GGTNACC 1 cut(s) 957
BstSCI CCNGG 2 cut(s) 589, 805
BstUI CGCG 2 cut(s) 452, 470
BstV1I GCAGC 3 cut(s) 128, 162, 472
BsuRI GGCC 2 cut(s) 372, 946
BtsI GCAGTG 1 cut(s) 915
BtsIMutI CAGTG 4 cut(s) 417, 699, 915, 977
Cac8I GCNNGC 1 cut(s) 483
CciI TCATGA 1 cut(s) 745
CfoI GCGC 1 cut(s) 150
Cfr10I RCCGGY 1 cut(s) 946
Cfr13I GGNCC 1 cut(s) 566
Csp6I GTAC 4 cut(s) 125, 318, 697, 968
CviAII CATG 2 cut(s) 482, 746
CviQI GTAC 4 cut(s) 125, 318, 697, 968
DdeI CTNAG 5 cut(s) 63, 639, 702, 927, 984
DpnI GATC 1 cut(s) 206
DpnII GATC 1 cut(s) 204
Eam1104I CTCTTC 3 cut(s) 51, 495, 687
EarI CTCTTC 3 cut(s) 51, 495, 687
EciI GGCGGA 1 cut(s) 408
Ecl136II GAGCTC 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 95
Eco31I GGTCTC 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 566
Eco53kI GAGCTC 1 cut(s) 93
Eco57I CTGAAG 1 cut(s) 318
Eco91I GGTNACC 1 cut(s) 957
EcoICRI GAGCTC 1 cut(s) 93
EcoO65I GGTNACC 1 cut(s) 957
EcoRI GAATTC 1 cut(s) 841
EcoRII CCWGG 1 cut(s) 589
EcoT22I ATGCAT 1 cut(s) 483
EcoT38I GRGCYC 1 cut(s) 95
FaeI CATG 2 cut(s) 485, 749
FaqI GGGAC 3 cut(s) 362, 543, 579
FatI CATG 2 cut(s) 481, 745
FauNDI CATATG 2 cut(s) 561, 964
FbaI TGATCA 1 cut(s) 204
Fnu4HI GCNGC 4 cut(s) 6, 117, 151, 486
FriOI GRGCYC 1 cut(s) 95
Fsp4HI GCNGC 4 cut(s) 6, 117, 151, 486
FspBI CTAG 2 cut(s) 435, 792
FspI TGCGCA 1 cut(s) 149
GlaI GCGC 1 cut(s) 149
GluI GCNGC 4 cut(s) 6, 117, 151, 486
GsaI CCCAGC 1 cut(s) 349
HaeIII GGCC 2 cut(s) 372, 946
HapII CCGG 2 cut(s) 806, 947
HhaI GCGC 1 cut(s) 150
Hin1II CATG 2 cut(s) 485, 749
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HincII GTYRAC 2 cut(s) 274, 382
HindII GTYRAC 2 cut(s) 274, 382
HindIII AAGCTT 1 cut(s) 860
HinfI GANTC 7 cut(s) 38, 243, 465, 643, 687, 749, 909
HpaI GTTAAC 1 cut(s) 382
HpaII CCGG 2 cut(s) 806, 947
HphI GGTGA 3 cut(s) 338, 1021, 1052
Hpy166II GTNNAC 3 cut(s) 274, 382, 699
Hpy188I TCNGA 3 cut(s) 282, 642, 648
Hpy188III TCNNGA 3 cut(s) 746, 753, 1061
Hpy8I GTNNAC 3 cut(s) 274, 382, 699
Hpy99I CGWCG 1 cut(s) 574
HpyAV CCTTC 6 cut(s) 81, 293, 323, 658, 827, 1006
HpyCH4III ACNGT 5 cut(s) 225, 293, 379, 386, 981
HpyCH4IV ACGT 1 cut(s) 199
HpyCH4V TGCA 2 cut(s) 481, 539
HpyF10VI GCNNNNNNNGC 1 cut(s) 449
HpyF3I CTNAG 5 cut(s) 63, 639, 702, 927, 984
HpySE526I ACGT 1 cut(s) 199
Hsp92II CATG 2 cut(s) 485, 749
HspAI GCGC 1 cut(s) 148
Ksp22I TGATCA 1 cut(s) 204
KspAI GTTAAC 1 cut(s) 382
Kzo9I GATC 1 cut(s) 204
LguI GCTCTTC 2 cut(s) 51, 495
LmnI GCTCC 2 cut(s) 90, 767
Lsp1109I GCAGC 3 cut(s) 128, 162, 472
LweI GCATC 1 cut(s) 408
MaeI CTAG 2 cut(s) 435, 792
MaeII ACGT 1 cut(s) 199
MaeIII GTNAC 2 cut(s) 787, 957
MalI GATC 1 cut(s) 206
MboI GATC 1 cut(s) 204
MboII GAAGA 6 cut(s) 38, 252, 482, 548, 619, 704
MhlI GDGCHC 1 cut(s) 95
MluCI AATT 6 cut(s) 50, 130, 427, 649, 796, 841
MlyI GAGTC 2 cut(s) 32, 696
MmeI TCCRAC 1 cut(s) 454
MnlI CCTC 6 cut(s) 151, 520, 627, 810, 936, 981
Mph1103I ATGCAT 1 cut(s) 483
MroXI GAANNNNTTC 1 cut(s) 427
MseI TTAA 3 cut(s) 162, 189, 381
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 2 cut(s) 806, 947
MspR9I CCNGG 2 cut(s) 591, 807
Mva1269I GAATGC 1 cut(s) 483
MvaI CCWGG 1 cut(s) 591
MvnI CGCG 2 cut(s) 452, 470
MwoI GCNNNNNNNGC 1 cut(s) 449
NciI CCSGG 1 cut(s) 807
NdeI CATATG 2 cut(s) 561, 964
NdeII GATC 1 cut(s) 204
NlaIII CATG 2 cut(s) 485, 749
NlaIV GGNNCC 1 cut(s) 567
NsbI TGCGCA 1 cut(s) 149
NsiI ATGCAT 1 cut(s) 483
NspI RCATGY 1 cut(s) 485
PaeI GCATGC 1 cut(s) 485
PagI TCATGA 1 cut(s) 745
PciSI GCTCTTC 2 cut(s) 51, 495
PctI GAATGC 1 cut(s) 483
PdmI GAANNNNTTC 1 cut(s) 427
PfeI GAWTC 5 cut(s) 243, 465, 643, 749, 909
PflFI GACNNNGTC 1 cut(s) 269
PkrI GCNGC 4 cut(s) 7, 118, 152, 487
PleI GAGTC 2 cut(s) 32, 695
PpsI GAGTC 2 cut(s) 32, 695
Ppu21I YACGTR 1 cut(s) 200
Psp124BI GAGCTC 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 589
PspEI GGTNACC 1 cut(s) 957
PspFI CCCAGC 1 cut(s) 345
PspGI CCWGG 1 cut(s) 589
PspN4I GGNNCC 1 cut(s) 567
PspPI GGNCC 1 cut(s) 566
PsyI GACNNNGTC 1 cut(s) 269
PvuII CAGCTG 1 cut(s) 119
RsaI GTAC 4 cut(s) 126, 319, 698, 969
RsaNI GTAC 4 cut(s) 125, 318, 697, 968
SacI GAGCTC 1 cut(s) 95
SapI GCTCTTC 2 cut(s) 51, 495
SaqAI TTAA 3 cut(s) 162, 189, 381
SatI GCNGC 4 cut(s) 6, 117, 151, 486
Sau3AI GATC 1 cut(s) 204
Sau96I GGNCC 1 cut(s) 566
SchI GAGTC 2 cut(s) 32, 696
ScrFI CCNGG 2 cut(s) 591, 807
SduI GDGCHC 1 cut(s) 95
SfaNI GCATC 1 cut(s) 408
SinI GGWCC 1 cut(s) 566
SmlI CTYRAG 1 cut(s) 992
SmoI CTYRAG 1 cut(s) 992
SpeI ACTAGT 1 cut(s) 791
SphI GCATGC 1 cut(s) 485
Sse9I AATT 6 cut(s) 50, 130, 427, 649, 796, 841
SsiI CCGC 3 cut(s) 393, 470, 614
SspMI CTAG 2 cut(s) 435, 792
SstI GAGCTC 1 cut(s) 95
StyD4I CCNGG 2 cut(s) 589, 805
TaaI ACNGT 5 cut(s) 225, 293, 379, 386, 981
TaiI ACGT 1 cut(s) 202
TaqI TCGA 7 cut(s) 95, 246, 431, 595, 690, 941, 1090
TaqII GACCGA 2 cut(s) 583, 1076
TasI AATT 6 cut(s) 50, 130, 427, 649, 796, 841
TatI WGTACW 1 cut(s) 696
TfiI GAWTC 5 cut(s) 243, 465, 643, 749, 909
Tru1I TTAA 3 cut(s) 162, 189, 381
Tru9I TTAA 3 cut(s) 162, 189, 381
TscAI CASTG 4 cut(s) 424, 706, 922, 984
TseI GCWGC 4 cut(s) 5, 116, 150, 485
TspDTI ATGAA 3 cut(s) 482, 548, 834
TspRI CASTG 4 cut(s) 424, 706, 922, 984
Tth111I GACNNNGTC 1 cut(s) 269
VpaK11BI GGWCC 1 cut(s) 566
XapI RAATTY 2 cut(s) 649, 841
XceI RCATGY 1 cut(s) 485
XmnI GAANNNNTTC 1 cut(s) 427
XspI CTAG 2 cut(s) 435, 792
Zsp2I ATGCAT 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.