Rorug01G0214100

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0012325
Physical Location & Seq
Reverse (-)
30447266 .. 30447562
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0214100.1

Sequence Viewer

Length: 297 bp
ATGGTAGGTCGATTGCTTGGCCCTAAGTGCAAGGTTCCGGGTTTCAAAGGCATTATTTCTACGATTTGGTGTATCAAAGCTGGGCTGACGATTCAAGACATGGGGGAGCGCTTTGTGTTTCAATTTGAGCGTGAGACTGGGCGCAACAAGATCTTAAATGGAGGGCCTTGGTTTTACAAAAACACTATGTTGGTGCTTGGCAAGTATGATGGTATTGGTCCTGTATCTGAGGTTCCTTTGAATCTCGTGGAAACATTGGGTAGCTATCAGGGGACTTCTGGTGGGGCTCCGAAATAA

Protein Analysis

98

Amino Acids

10.68

Weight (kDa)

9.47

Isoelectric Point (pI)

20.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4283 PF14111 2 - 69 2.3e-11 Domain of unknown function (DUF4283)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012325)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45440 AT3G60880 AT3G60880
fragaria_vesca FvH4_7g12060
malus_domestica MD02G1201600.v1.1
prunus_persica Prupe.2G147200_v2.0.a1
pyrus_communis pycom02g16500
rosa_chinensis RchiOBHm_Chr1g0350811 RchiOBHm_Chr7g0217051
rosa_laevigata RLG00000028454
rosa_multiflora Rmu_co8411727.1_g000001 Rmu_sc0006200.1_g000005 Rmu_sc0008591.1_g000006
rosa_roxburghii Rroxscaffold_4G00304500
rosa_rugosa Rorug01G0214100
rosa_samantha Rh1BG198700 Rh1CG213500 Rh1DG226600
rosa_wichuraiana Rw1G019790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfeI AGCGCT 1 cut(s) 110
AgsI TTSAA 4 cut(s) 46, 95, 122, 241
AluBI AGCT 2 cut(s) 80, 264
AluI AGCT 2 cut(s) 80, 264
Alw26I GTCTC 1 cut(s) 128
Aor51HI AGCGCT 1 cut(s) 110
AoxI GGCC 2 cut(s) 19, 164
AspLEI GCGC 2 cut(s) 111, 144
AspS9I GGNCC 3 cut(s) 20, 164, 218
AsuC2I CCSGG 1 cut(s) 39
AvaII GGWCC 1 cut(s) 218
BanII GRGCYC 1 cut(s) 289
BauI CACGAG 1 cut(s) 245
BccI CCATC 1 cut(s) 203
BcnI CCSGG 1 cut(s) 39
BcoDI GTCTC 1 cut(s) 128
BfoI RGCGCY 1 cut(s) 112
BglII AGATCT 1 cut(s) 150
Bme1390I CCNGG 1 cut(s) 39
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 3 cut(s) 20, 164, 218
BmiI GGNNCC 3 cut(s) 36, 234, 288
BmrFI CCNGG 1 cut(s) 39
BmrI ACTGGG 1 cut(s) 147
BmuI ACTGGG 1 cut(s) 147
BpuMI CCSGG 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 167
BseMII CTCAG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 142
BseYI CCCAGC 1 cut(s) 80
BshFI GGCC 2 cut(s) 21, 166
BsiSI CCGG 1 cut(s) 38
BslFI GGGAC 1 cut(s) 286
BsmAI GTCTC 1 cut(s) 128
BsmFI GGGAC 1 cut(s) 286
BsnI GGCC 2 cut(s) 21, 166
Bsp1286I GDGCHC 1 cut(s) 289
Bsp143I GATC 1 cut(s) 150
BspANI GGCC 2 cut(s) 21, 166
BspCNI CTCAG 1 cut(s) 220
BspLI GGNNCC 3 cut(s) 36, 234, 288
BsrI ACTGG 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 1 cut(s) 150
BssSI CACGAG 1 cut(s) 245
BssT1I CCWWGG 1 cut(s) 167
Bst2BI CACGAG 1 cut(s) 245
BstDEI CTNAG 2 cut(s) 24, 228
BstH2I RGCGCY 1 cut(s) 112
BstHHI GCGC 2 cut(s) 111, 144
BstKTI GATC 1 cut(s) 153
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 1 cut(s) 150
BstMWI GCNNNNNNNGC 1 cut(s) 27
BstSCI CCNGG 1 cut(s) 37
BstX2I RGATCY 1 cut(s) 150
BstYI RGATCY 1 cut(s) 150
BsuRI GGCC 2 cut(s) 21, 166
CfoI GCGC 2 cut(s) 111, 144
Cfr13I GGNCC 3 cut(s) 20, 164, 218
CviAII CATG 1 cut(s) 100
CviJI RGCY 6 cut(s) 21, 80, 85, 166, 264, 287
CviKI_1 RGCY 6 cut(s) 21, 80, 85, 166, 264, 287
DdeI CTNAG 2 cut(s) 24, 228
DpnI GATC 1 cut(s) 152
DpnII GATC 1 cut(s) 150
Eco130I CCWWGG 1 cut(s) 167
Eco24I GRGCYC 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 218
Eco47III AGCGCT 1 cut(s) 110
EcoO109I RGGNCCY 1 cut(s) 164
EcoT14I CCWWGG 1 cut(s) 167
EcoT38I GRGCYC 1 cut(s) 289
ErhI CCWWGG 1 cut(s) 167
FaeI CATG 1 cut(s) 103
FaiI YATR 3 cut(s) 101, 188, 207
FaqI GGGAC 1 cut(s) 286
FatI CATG 1 cut(s) 99
FriOI GRGCYC 1 cut(s) 289
GlaI GCGC 2 cut(s) 110, 143
GsaI CCCAGC 1 cut(s) 84
HaeII RGCGCY 1 cut(s) 112
HaeIII GGCC 2 cut(s) 21, 166
HapII CCGG 1 cut(s) 38
HhaI GCGC 2 cut(s) 111, 144
Hin1II CATG 1 cut(s) 103
Hin6I GCGC 2 cut(s) 109, 142
HinP1I GCGC 2 cut(s) 109, 142
HinfI GANTC 2 cut(s) 91, 241
HpaII CCGG 1 cut(s) 38
Hpy188I TCNGA 2 cut(s) 229, 291
Hpy188III TCNNGA 1 cut(s) 95
HpyCH4V TGCA 1 cut(s) 30
HpyF10VI GCNNNNNNNGC 1 cut(s) 27
HpyF3I CTNAG 2 cut(s) 24, 228
Hsp92II CATG 1 cut(s) 103
HspAI GCGC 2 cut(s) 109, 142
Kzo9I GATC 1 cut(s) 150
LmnI GCTCC 2 cut(s) 106, 292
LpnPI CCDG 6 cut(s) 51, 66, 123, 234, 254, 264
MalI GATC 1 cut(s) 152
MboI GATC 1 cut(s) 150
MflI RGATCY 1 cut(s) 150
MhlI GDGCHC 1 cut(s) 289
MluCI AATT 1 cut(s) 122
MnlI CCTC 2 cut(s) 155, 223
MseI TTAA 1 cut(s) 155
MspI CCGG 1 cut(s) 38
MspR9I CCNGG 1 cut(s) 39
MwoI GCNNNNNNNGC 1 cut(s) 27
NciI CCSGG 1 cut(s) 39
NdeII GATC 1 cut(s) 150
NlaIII CATG 1 cut(s) 103
NlaIV GGNNCC 3 cut(s) 36, 234, 288
PfeI GAWTC 2 cut(s) 91, 241
PspFI CCCAGC 1 cut(s) 80
PspN4I GGNNCC 3 cut(s) 36, 234, 288
PspPI GGNCC 3 cut(s) 20, 164, 218
PsrI GAACNNNNNNTAC 2 cut(s) 216, 248
PsuI RGATCY 1 cut(s) 150
SaqAI TTAA 1 cut(s) 155
Sau3AI GATC 1 cut(s) 150
Sau96I GGNCC 3 cut(s) 20, 164, 218
ScrFI CCNGG 1 cut(s) 39
SduI GDGCHC 1 cut(s) 289
SetI ASST 5 cut(s) 10, 36, 82, 234, 266
SinI GGWCC 1 cut(s) 218
Sse9I AATT 1 cut(s) 122
StyD4I CCNGG 1 cut(s) 37
StyI CCWWGG 1 cut(s) 167
TaqI TCGA 1 cut(s) 10
TasI AATT 1 cut(s) 122
TfiI GAWTC 2 cut(s) 91, 241
Tru1I TTAA 1 cut(s) 155
Tru9I TTAA 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.