Rh1DG226600

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0012325
Physical Location & Seq
Forward (+)
43706791 .. 43708435
1645 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG226600.1

Sequence Viewer

Length: 978 bp
ATGGAGGAGTCCACGAGGAGCTGTGCTGCCGAATTTTCACCTTCCGATGCGACATCTACAGAGGAGATAAAGTCACTTAGACTGATAACAGCCATCAAAACGCCATATCTACCGGATGGCAGATTTGATCTTGAAGCGTATGATGCATTGGTTAATACGCAGATTGAACATGGAGCTGAAGGTGTGATTGTTGGTGGCACAACGGGTGAAGGTCAGTTGATGAGTTGGGACGAGCACATAATGCTCATAGGCCACACGATCAACTGTTATGGTGGATCAATTAAGGTAATAGGAAACACTGGCAGCAACTCCACAAGGGAAGCAGTTCATGCTACTGAACAAGGGTTTGCAGTTGGGATGCATGCTGCACTGCACATCAATCCTTATTATGGAAAGACCTCCTTGGAGGGATTGGTTAAGCACTTCGAAAGTGTCTTATCTATGGGACCCACTATCATATACAATGTGCCATCACGAACTGGCCAAGATATCCCCCACCAGGTGATTAACACGTTGGCACAGAATGCCAACTTGGCAGGTGTCAAGGAGTGCGTTGGAAATGATCGGATTATAGAGCACATTGACAAGGGAATTGTGGTTTGGAGTGGGAATGATGATGAGTGCCATGATTCAAGGTGGAACCACGGAGCTACTGGAGTCATATCTGTTACTAGTAATTTGGTTCCGGGTTTAATGCGAGACCTCATGTTTGGGGGGAAGAACCCTTCTCTTAATGCAAAGCTCATGCCTCTGATTGAGTGGCTTTTTCAGGAGCCAAACCCCATTGGCCTAAATACAGCACTTGCCCAACTAGGTGTCGTGAGACCAGTCTTCAGGCTGCCATATGTACCTCTTCCTTATGAAAAGAGAGTAGAGTTTGTCAACCTGGTTAAGCATATTGGGCGGGAGCATTTTGTTGGAGAAAAGGGTGTTCAAGTTCTTGATGATGATGACTTCACTTATTTGGATCGATATTAG

Protein Analysis

325

Amino Acids

35.67

Weight (kDa)

5.26

Isoelectric Point (pI)

38.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHDPS PF00701 26 - 299 5e-94 Dihydrodipicolinate synthetase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012325)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45440 AT3G60880 AT3G60880
fragaria_vesca FvH4_7g12060
malus_domestica MD02G1201600.v1.1
prunus_persica Prupe.2G147200_v2.0.a1
pyrus_communis pycom02g16500
rosa_chinensis RchiOBHm_Chr1g0350811 RchiOBHm_Chr7g0217051
rosa_laevigata RLG00000028454
rosa_multiflora Rmu_co8411727.1_g000001 Rmu_sc0006200.1_g000005 Rmu_sc0008591.1_g000006
rosa_roxburghii Rroxscaffold_4G00304500
rosa_rugosa Rorug01G0214100
rosa_samantha Rh1BG198700 Rh1CG213500 Rh1DG226600
rosa_wichuraiana Rw1G019790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 527
Acc36I ACCTGC 1 cut(s) 527
AciI CCGC 1 cut(s) 904
AclWI GGATC 2 cut(s) 283, 975
AcoI YGGCCR 1 cut(s) 481
AcsI RAATTY 1 cut(s) 32
AcuI CTGAAG 2 cut(s) 198, 817
AdeI CACNNNGTG 1 cut(s) 502
AfaI GTAC 1 cut(s) 849
AfiI CCNNNNNNNGG 2 cut(s) 389, 499
AflIII ACRYGT 1 cut(s) 510
AgsI TTSAA 4 cut(s) 134, 167, 633, 935
AhlI ACTAGT 1 cut(s) 671
AjnI CCWGG 2 cut(s) 498, 885
AjuI GAANNNNNNNTTGG 4 cut(s) 515, 547, 583, 615
AluBI AGCT 4 cut(s) 21, 176, 650, 742
AluI AGCT 4 cut(s) 21, 176, 650, 742
Alw21I GWGCWC 2 cut(s) 237, 579
Alw26I GTCTC 2 cut(s) 693, 817
AlwI GGATC 2 cut(s) 283, 975
AoxI GGCC 3 cut(s) 250, 481, 787
ApeKI GCWGC 4 cut(s) 26, 303, 365, 838
ApoI RAATTY 1 cut(s) 32
ArsI GACNNNNNNTTYG 2 cut(s) 692, 724
Asp700I GAANNNNTTC 1 cut(s) 324
AspS9I GGNCC 1 cut(s) 446
AsuC2I CCSGG 1 cut(s) 687
AsuHPI GGTGA 3 cut(s) 30, 218, 514
AsuII TTCGAA 1 cut(s) 426
AvaII GGWCC 1 cut(s) 446
BalI TGGCCA 1 cut(s) 483
BauI CACGAG 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 823
Bbv12I GWGCWC 2 cut(s) 237, 579
BbvI GCAGC 4 cut(s) 13, 315, 352, 825
BccI CCATC 3 cut(s) 101, 110, 478
BciT130I CCWGG 2 cut(s) 500, 887
BcnI CCSGG 1 cut(s) 687
BcoDI GTCTC 2 cut(s) 693, 817
BcuI ACTAGT 1 cut(s) 671
BfaI CTAG 2 cut(s) 672, 812
BfmI CTRYAG 1 cut(s) 57
BfuAI ACCTGC 1 cut(s) 527
BglI GCCNNNNNGGC 1 cut(s) 533
BisI GCNGC 4 cut(s) 27, 304, 366, 839
BlsI GCNGC 4 cut(s) 28, 305, 367, 840
Bme1390I CCNGG 3 cut(s) 500, 687, 887
Bme18I GGWCC 1 cut(s) 446
BmgT120I GGNCC 1 cut(s) 446
BmiI GGNNCC 5 cut(s) 447, 448, 641, 684, 774
BmrFI CCNGG 3 cut(s) 500, 687, 887
BmsI GCATC 3 cut(s) 37, 133, 348
BpiI GAAGAC 1 cut(s) 823
BpmI CTGGAG 1 cut(s) 675
Bpu14I TTCGAA 1 cut(s) 426
BpuMI CCSGG 1 cut(s) 687
Bsa29I ATCGAT 1 cut(s) 970
BsaI GGTCTC 2 cut(s) 693, 817
BsaJI CCNNGG 2 cut(s) 402, 643
BsaWI WCCGGW 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 2 cut(s) 389, 499
Bse1I ACTGG 4 cut(s) 304, 484, 658, 827
BseBI CCWGG 2 cut(s) 500, 887
BseCI ATCGAT 1 cut(s) 970
BseDI CCNNGG 2 cut(s) 402, 643
BseGI GGATG 2 cut(s) 121, 363
BseLI CCNNNNNNNGG 2 cut(s) 389, 499
BseNI ACTGG 4 cut(s) 304, 484, 658, 827
BseRI GAGGAG 3 cut(s) 20, 31, 77
BseXI GCAGC 4 cut(s) 13, 315, 352, 825
BsgI GTGCAG 2 cut(s) 351, 356
BshFI GGCC 3 cut(s) 252, 483, 789
BshVI ATCGAT 1 cut(s) 970
BsiHKAI GWGCWC 2 cut(s) 237, 579
BsiSI CCGG 2 cut(s) 113, 686
BslFI GGGAC 2 cut(s) 242, 459
BslI CCNNNNNNNGG 2 cut(s) 389, 499
BsmAI GTCTC 2 cut(s) 693, 817
BsmFI GGGAC 2 cut(s) 242, 459
BsmI GAATGC 1 cut(s) 529
BsnI GGCC 3 cut(s) 252, 483, 789
Bso31I GGTCTC 2 cut(s) 693, 817
Bsp119I TTCGAA 1 cut(s) 426
Bsp1286I GDGCHC 2 cut(s) 237, 579
Bsp143I GATC 5 cut(s) 127, 258, 275, 562, 967
BspACI CCGC 1 cut(s) 904
BspANI GGCC 3 cut(s) 252, 483, 789
BspDI ATCGAT 1 cut(s) 970
BspLI GGNNCC 5 cut(s) 447, 448, 641, 684, 774
BspMI ACCTGC 1 cut(s) 527
BspPI GGATC 2 cut(s) 283, 975
BspT104I TTCGAA 1 cut(s) 426
BspTNI GGTCTC 2 cut(s) 693, 817
BsrI ACTGG 4 cut(s) 304, 484, 658, 827
BssECI CCNNGG 2 cut(s) 402, 643
BssMI GATC 5 cut(s) 127, 258, 275, 562, 967
BssSI CACGAG 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 402
Bst2BI CACGAG 1 cut(s) 13
Bst2UI CCWGG 2 cut(s) 500, 887
Bst4CI ACNGT 1 cut(s) 266
Bst6I CTCTTC 1 cut(s) 858
BstAPI GCANNNNNTGC 3 cut(s) 241, 329, 524
BstBI TTCGAA 1 cut(s) 426
BstC8I GCNNGC 1 cut(s) 363
BstDEI CTNAG 1 cut(s) 77
BstDSI CCRYGG 1 cut(s) 643
BstF5I GGATG 2 cut(s) 121, 363
BstKTI GATC 5 cut(s) 130, 261, 278, 565, 970
BstMAI GTCTC 2 cut(s) 693, 817
BstMBI GATC 5 cut(s) 127, 258, 275, 562, 967
BstMWI GCNNNNNNNGC 6 cut(s) 143, 241, 329, 524, 533, 901
BstNI CCWGG 2 cut(s) 500, 887
BstNSI RCATGY 1 cut(s) 365
BstSCI CCNGG 3 cut(s) 498, 685, 885
BstSFI CTRYAG 1 cut(s) 57
BstV1I GCAGC 4 cut(s) 13, 315, 352, 825
BstV2I GAAGAC 1 cut(s) 823
Bsu15I ATCGAT 1 cut(s) 970
BsuRI GGCC 3 cut(s) 252, 483, 789
BsuTUI ATCGAT 1 cut(s) 970
BtgI CCRYGG 1 cut(s) 643
BtsCI GGATG 2 cut(s) 121, 363
BtsI GCAGTG 1 cut(s) 368
BtsIMutI CAGTG 2 cut(s) 297, 368
BveI ACCTGC 1 cut(s) 527
Cac8I GCNNGC 1 cut(s) 363
Cfr13I GGNCC 1 cut(s) 446
ClaI ATCGAT 1 cut(s) 970
CsiI ACCWGGT 2 cut(s) 498, 885
Csp6I GTAC 1 cut(s) 848
CviAII CATG 6 cut(s) 170, 329, 362, 626, 706, 745
CviQI GTAC 1 cut(s) 848
DdeI CTNAG 1 cut(s) 77
DpnI GATC 5 cut(s) 129, 260, 277, 564, 969
DpnII GATC 5 cut(s) 127, 258, 275, 562, 967
DraIII CACNNNGTG 1 cut(s) 502
EaeI YGGCCR 1 cut(s) 481
Eam1104I CTCTTC 1 cut(s) 858
EarI CTCTTC 1 cut(s) 858
Eco130I CCWWGG 1 cut(s) 402
Eco31I GGTCTC 2 cut(s) 693, 817
Eco32I GATATC 1 cut(s) 490
Eco47I GGWCC 1 cut(s) 446
Eco57I CTGAAG 2 cut(s) 198, 817
EcoO109I RGGNCCY 1 cut(s) 446
EcoRII CCWGG 2 cut(s) 498, 885
EcoRV GATATC 1 cut(s) 490
EcoT14I CCWWGG 1 cut(s) 402
EcoT22I ATGCAT 2 cut(s) 148, 363
ErhI CCWWGG 1 cut(s) 402
FaeI CATG 6 cut(s) 173, 332, 365, 629, 709, 748
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FaqI GGGAC 2 cut(s) 242, 459
FatI CATG 6 cut(s) 169, 328, 361, 625, 705, 744
FauI CCCGC 1 cut(s) 897
FauNDI CATATG 1 cut(s) 844
Fnu4HI GCNGC 4 cut(s) 27, 304, 366, 839
FokI GGATG 2 cut(s) 128, 370
Fsp4HI GCNGC 4 cut(s) 27, 304, 366, 839
FspBI CTAG 2 cut(s) 672, 812
GluI GCNGC 4 cut(s) 27, 304, 366, 839
GsuI CTGGAG 1 cut(s) 675
HaeIII GGCC 3 cut(s) 252, 483, 789
HapII CCGG 2 cut(s) 113, 686
Hin1II CATG 6 cut(s) 173, 332, 365, 629, 709, 748
HincII GTYRAC 1 cut(s) 883
HindII GTYRAC 1 cut(s) 883
HinfI GANTC 3 cut(s) 8, 629, 657
HpaII CCGG 2 cut(s) 113, 686
HphI GGTGA 3 cut(s) 30, 218, 514
Hpy166II GTNNAC 2 cut(s) 12, 883
Hpy188I TCNGA 3 cut(s) 46, 567, 753
Hpy188III TCNNGA 5 cut(s) 131, 474, 770, 820, 941
Hpy8I GTNNAC 2 cut(s) 12, 883
HpyAV CCTTC 4 cut(s) 51, 173, 203, 735
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4IV ACGT 1 cut(s) 512
HpyCH4V TGCA 6 cut(s) 146, 350, 361, 368, 373, 737
HpyF10VI GCNNNNNNNGC 6 cut(s) 143, 241, 329, 524, 533, 901
HpyF3I CTNAG 1 cut(s) 77
HpySE526I ACGT 1 cut(s) 512
Hsp92II CATG 6 cut(s) 173, 332, 365, 629, 709, 748
KflI GGGWCCC 1 cut(s) 446
Kzo9I GATC 5 cut(s) 127, 258, 275, 562, 967
LmnI GCTCC 5 cut(s) 18, 173, 647, 772, 907
Lsp1109I GCAGC 4 cut(s) 13, 315, 352, 825
LweI GCATC 3 cut(s) 37, 133, 348
MabI ACCWGGT 2 cut(s) 498, 885
MaeI CTAG 2 cut(s) 672, 812
MaeII ACGT 1 cut(s) 512
MaeIII GTNAC 2 cut(s) 72, 667
MalI GATC 5 cut(s) 129, 260, 277, 564, 969
MboI GATC 5 cut(s) 127, 258, 275, 562, 967
MboII GAAGA 3 cut(s) 730, 823, 845
MhlI GDGCHC 2 cut(s) 237, 579
MlsI TGGCCA 1 cut(s) 483
MluCI AATT 4 cut(s) 32, 279, 591, 676
MluNI TGGCCA 1 cut(s) 483
MlyI GAGTC 2 cut(s) 17, 666
MmeI TCCRAC 2 cut(s) 535, 898
MnlI CCTC 7 cut(s) 9, 55, 400, 409, 713, 759, 861
Mox20I TGGCCA 1 cut(s) 483
Mph1103I ATGCAT 2 cut(s) 148, 363
MroXI GAANNNNTTC 1 cut(s) 324
MscI TGGCCA 1 cut(s) 483
MseI TTAA 7 cut(s) 153, 282, 417, 507, 692, 732, 891
Msp20I TGGCCA 1 cut(s) 483
MspI CCGG 2 cut(s) 113, 686
MspR9I CCNGG 3 cut(s) 500, 687, 887
Mva1269I GAATGC 1 cut(s) 529
MvaI CCWGG 2 cut(s) 500, 887
MwoI GCNNNNNNNGC 6 cut(s) 143, 241, 329, 524, 533, 901
NciI CCSGG 1 cut(s) 687
NdeI CATATG 1 cut(s) 844
NdeII GATC 5 cut(s) 127, 258, 275, 562, 967
NlaIII CATG 6 cut(s) 173, 332, 365, 629, 709, 748
NlaIV GGNNCC 5 cut(s) 447, 448, 641, 684, 774
NmuCI GTSAC 1 cut(s) 72
NsiI ATGCAT 2 cut(s) 148, 363
NspI RCATGY 1 cut(s) 365
NspV TTCGAA 1 cut(s) 426
PaeI GCATGC 1 cut(s) 365
PaqCI CACCTGC 1 cut(s) 527
PctI GAATGC 1 cut(s) 529
PdmI GAANNNNTTC 1 cut(s) 324
PfeI GAWTC 1 cut(s) 629
PkrI GCNGC 4 cut(s) 28, 305, 367, 840
PleI GAGTC 2 cut(s) 16, 665
PpsI GAGTC 2 cut(s) 16, 665
PpuMI RGGWCCY 1 cut(s) 446
Psp5II RGGWCCY 1 cut(s) 446
Psp6I CCWGG 2 cut(s) 498, 885
PspGI CCWGG 2 cut(s) 498, 885
PspN4I GGNNCC 5 cut(s) 447, 448, 641, 684, 774
PspPI GGNCC 1 cut(s) 446
PspPPI RGGWCCY 1 cut(s) 446
RsaI GTAC 1 cut(s) 849
RsaNI GTAC 1 cut(s) 848
SaqAI TTAA 7 cut(s) 153, 282, 417, 507, 692, 732, 891
SatI GCNGC 4 cut(s) 27, 304, 366, 839
Sau3AI GATC 5 cut(s) 127, 258, 275, 562, 967
Sau96I GGNCC 1 cut(s) 446
SchI GAGTC 2 cut(s) 17, 666
ScrFI CCNGG 3 cut(s) 500, 687, 887
SduI GDGCHC 2 cut(s) 237, 579
SexAI ACCWGGT 2 cut(s) 498, 885
SfaNI GCATC 3 cut(s) 37, 133, 348
SfcI CTRYAG 1 cut(s) 57
SfuI TTCGAA 1 cut(s) 426
SinI GGWCC 1 cut(s) 446
SpeI ACTAGT 1 cut(s) 671
SphI GCATGC 1 cut(s) 365
Sse9I AATT 4 cut(s) 32, 279, 591, 676
SsiI CCGC 1 cut(s) 904
SspMI CTAG 2 cut(s) 672, 812
StyD4I CCNGG 3 cut(s) 498, 685, 885
StyI CCWWGG 1 cut(s) 402
TaaI ACNGT 1 cut(s) 266
TaiI ACGT 1 cut(s) 515
TaqI TCGA 2 cut(s) 426, 970
TasI AATT 4 cut(s) 32, 279, 591, 676
TfiI GAWTC 1 cut(s) 629
Tru1I TTAA 7 cut(s) 153, 282, 417, 507, 692, 732, 891
Tru9I TTAA 7 cut(s) 153, 282, 417, 507, 692, 732, 891
TscAI CASTG 2 cut(s) 304, 375
TseFI GTSAC 1 cut(s) 72
TseI GCWGC 4 cut(s) 26, 303, 365, 838
Tsp45I GTSAC 1 cut(s) 72
TspDTI ATGAA 2 cut(s) 317, 876
TspGWI ACGGA 1 cut(s) 660
TspRI CASTG 2 cut(s) 304, 375
VpaK11BI GGWCC 1 cut(s) 446
XapI RAATTY 1 cut(s) 32
XceI RCATGY 1 cut(s) 365
XcmI CCANNNNNNNNNTGG 1 cut(s) 650
XmnI GAANNNNTTC 1 cut(s) 324
XspI CTAG 2 cut(s) 672, 812
Zsp2I ATGCAT 2 cut(s) 148, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.