Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8411727.1

Orthogroup ID

OG0012325

Physical Location & Seq

Genomic Coordinates Reverse (-)

375 .. 1271

Gene Structure 897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8411727.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ctgataacagccatcaaaacgccatatctaccggatggcagattcgatcttgaagcgtatgatgcattggttaatacgcagattgaacatggagctgaaggtgtgattgttggtggcacaacgggtgaaggtcagttgatgagttgggacgagcacataatgctcataggccacacgatcaactgttatggtggatcaattaaggtaataggaaacactggcagcaactccacaagggaagcggttcatgctactgaacaagggtttgcagttgggatgcatgctgcactgcacatcaatccttattatggaaagacctccttggagggattggttaagcacttcgaaagggtcttatctatgggacccactatcatatacaatgtgccatcacgaactggccaagatatcccccaccaggtgattaacacgttggcacagaatgccaacttggcgggtgtcaaggagtgcgttggaaatgatcggattatagagcacattgacaagggaattgtggtttggagtgggaatgatgatgagtgccatgattcaaggtggaaccacggagctactggagtcatatctgttaccagtaatttggttccgggtttaatgcgagacctcatgtttggggggaagaacccttctcttaatgcaaagctcatgcctctgattgagtggctttttcaggagccaaaccccattggcctaaatacagcacttgcccaacttggtgtcgtgagaccagtcttcaggctgccatatgtacctcttccttatgaaaagagagtagattttgtcaacctggttaagcaaattgggcgggagcattttgttggagaaaagggtgttcaagttcttgatgatgatgacttcacttatttggatcgatattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008840 GO:0009507 GO:0009536 GO:0016829 GO:0016835 GO:0016836 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00261 ko00300 ko01100 ko01110 ko01120 ko01130 ko01230 map00261 map00300 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

DHDPS

Protein Analysis

298

Amino Acids

32.77

Weight (kDa)

5.5

Isoelectric Point (pI)

29.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45440 AT3G60880 AT3G60880
fragaria_vesca	FvH4_7g12060
malus_domestica	MD02G1201600.v1.1
prunus_persica	Prupe.2G147200_v2.0.a1
pyrus_communis	pycom02g16500
rosa_chinensis	RchiOBHm_Chr1g0350811 RchiOBHm_Chr7g0217051
rosa_laevigata	RLG00000028454
rosa_multiflora	Rmu_co8411727.1_g000001 Rmu_sc0006200.1_g000005 Rmu_sc0008591.1_g000006
rosa_roxburghii	Rroxscaffold_4G00304500
rosa_rugosa	Rorug01G0214100
rosa_samantha	Rh1BG198700 Rh1CG213500 Rh1DG226600
rosa_wichuraiana	Rw1G019790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	242, 455, 823
AclWI	GGATC	2 cut(s)	202, 894
AcoI	YGGCCR	1 cut(s)	400
AcuI	CTGAAG	2 cut(s)	117, 736
AdeI	CACNNNGTG	1 cut(s)	421
AfaI	GTAC	1 cut(s)	768
AfiI	CCNNNNNNNGG	2 cut(s)	308, 418
AflIII	ACRYGT	1 cut(s)	429
AgsI	TTSAA	4 cut(s)	53, 86, 552, 854
AjnI	CCWGG	2 cut(s)	417, 804
AjuI	GAANNNNNNNTTGG	4 cut(s)	434, 466, 502, 534
AluBI	AGCT	3 cut(s)	95, 569, 661
AluI	AGCT	3 cut(s)	95, 569, 661
Alw21I	GWGCWC	2 cut(s)	156, 498
Alw26I	GTCTC	2 cut(s)	612, 736
AlwI	GGATC	2 cut(s)	202, 894
AoxI	GGCC	3 cut(s)	169, 400, 706
ApeKI	GCWGC	3 cut(s)	222, 284, 757
ArsI	GACNNNNNNTTYG	2 cut(s)	611, 643
Asp700I	GAANNNNTTC	1 cut(s)	243
AspS9I	GGNCC	1 cut(s)	365
AsuC2I	CCSGG	1 cut(s)	606
AsuHPI	GGTGA	2 cut(s)	137, 433
AsuII	TTCGAA	1 cut(s)	345
AvaII	GGWCC	1 cut(s)	365
BalI	TGGCCA	1 cut(s)	402
BbsI	GAAGAC	1 cut(s)	742
Bbv12I	GWGCWC	2 cut(s)	156, 498
BbvI	GCAGC	3 cut(s)	234, 271, 744
BccI	CCATC	3 cut(s)	20, 29, 397
BciT130I	CCWGG	2 cut(s)	419, 806
BcnI	CCSGG	1 cut(s)	606
BcoDI	GTCTC	2 cut(s)	612, 736
BglI	GCCNNNNNGGC	1 cut(s)	452
BisI	GCNGC	3 cut(s)	223, 285, 758
BlsI	GCNGC	3 cut(s)	224, 286, 759
Bme1390I	CCNGG	3 cut(s)	419, 606, 806
Bme18I	GGWCC	1 cut(s)	365
BmgT120I	GGNCC	1 cut(s)	365
BmiI	GGNNCC	5 cut(s)	366, 367, 560, 603, 693
BmrFI	CCNGG	3 cut(s)	419, 606, 806
BmsI	GCATC	2 cut(s)	52, 267
BpiI	GAAGAC	1 cut(s)	742
BpmI	CTGGAG	1 cut(s)	594
Bpu14I	TTCGAA	1 cut(s)	345
BpuMI	CCSGG	1 cut(s)	606
Bsa29I	ATCGAT	1 cut(s)	889
BsaI	GGTCTC	2 cut(s)	612, 736
BsaJI	CCNNGG	2 cut(s)	321, 562
BsaWI	WCCGGW	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	2 cut(s)	308, 418
Bse1I	ACTGG	5 cut(s)	223, 403, 577, 591, 746
BseBI	CCWGG	2 cut(s)	419, 806
BseCI	ATCGAT	1 cut(s)	889
BseDI	CCNNGG	2 cut(s)	321, 562
BseGI	GGATG	2 cut(s)	40, 282
BseLI	CCNNNNNNNGG	2 cut(s)	308, 418
BseNI	ACTGG	5 cut(s)	223, 403, 577, 591, 746
BseXI	GCAGC	3 cut(s)	234, 271, 744
BsgI	GTGCAG	2 cut(s)	270, 275
BshFI	GGCC	3 cut(s)	171, 402, 708
BshVI	ATCGAT	1 cut(s)	889
BsiHKAI	GWGCWC	2 cut(s)	156, 498
BsiSI	CCGG	2 cut(s)	32, 605
BslFI	GGGAC	2 cut(s)	161, 378
BslI	CCNNNNNNNGG	2 cut(s)	308, 418
BsmAI	GTCTC	2 cut(s)	612, 736
BsmFI	GGGAC	2 cut(s)	161, 378
BsmI	GAATGC	1 cut(s)	448
BsnI	GGCC	3 cut(s)	171, 402, 708
Bso31I	GGTCTC	2 cut(s)	612, 736
Bsp119I	TTCGAA	1 cut(s)	345
Bsp1286I	GDGCHC	2 cut(s)	156, 498
Bsp143I	GATC	5 cut(s)	46, 177, 194, 481, 886
BspACI	CCGC	3 cut(s)	242, 455, 823
BspANI	GGCC	3 cut(s)	171, 402, 708
BspDI	ATCGAT	1 cut(s)	889
BspLI	GGNNCC	5 cut(s)	366, 367, 560, 603, 693
BspPI	GGATC	2 cut(s)	202, 894
BspT104I	TTCGAA	1 cut(s)	345
BspTNI	GGTCTC	2 cut(s)	612, 736
BsrI	ACTGG	5 cut(s)	223, 403, 577, 591, 746
BssECI	CCNNGG	2 cut(s)	321, 562
BssMI	GATC	5 cut(s)	46, 177, 194, 481, 886
BssT1I	CCWWGG	1 cut(s)	321
Bst2UI	CCWGG	2 cut(s)	419, 806
Bst4CI	ACNGT	1 cut(s)	185
Bst6I	CTCTTC	1 cut(s)	777
BstAPI	GCANNNNNTGC	2 cut(s)	160, 443
BstBI	TTCGAA	1 cut(s)	345
BstC8I	GCNNGC	1 cut(s)	282
BstDSI	CCRYGG	1 cut(s)	562
BstF5I	GGATG	2 cut(s)	40, 282
BstKTI	GATC	5 cut(s)	49, 180, 197, 484, 889
BstMAI	GTCTC	2 cut(s)	612, 736
BstMBI	GATC	5 cut(s)	46, 177, 194, 481, 886
BstMWI	GCNNNNNNNGC	6 cut(s)	62, 160, 248, 443, 452, 820
BstNI	CCWGG	2 cut(s)	419, 806
BstNSI	RCATGY	1 cut(s)	284
BstSCI	CCNGG	3 cut(s)	417, 604, 804
BstV1I	GCAGC	3 cut(s)	234, 271, 744
BstV2I	GAAGAC	1 cut(s)	742
BstXI	CCANNNNNNTGG	1 cut(s)	598
Bsu15I	ATCGAT	1 cut(s)	889
BsuRI	GGCC	3 cut(s)	171, 402, 708
BsuTUI	ATCGAT	1 cut(s)	889
BtgI	CCRYGG	1 cut(s)	562
BtsCI	GGATG	2 cut(s)	40, 282
BtsI	GCAGTG	1 cut(s)	287
BtsIMutI	CAGTG	2 cut(s)	216, 287
Cac8I	GCNNGC	1 cut(s)	282
Cfr13I	GGNCC	1 cut(s)	365
ClaI	ATCGAT	1 cut(s)	889
CsiI	ACCWGGT	2 cut(s)	417, 804
Csp6I	GTAC	1 cut(s)	767
CviAII	CATG	6 cut(s)	89, 248, 281, 545, 625, 664
CviQI	GTAC	1 cut(s)	767
DpnI	GATC	5 cut(s)	48, 179, 196, 483, 888
DpnII	GATC	5 cut(s)	46, 177, 194, 481, 886
DraIII	CACNNNGTG	1 cut(s)	421
EaeI	YGGCCR	1 cut(s)	400
Eam1104I	CTCTTC	1 cut(s)	777
EarI	CTCTTC	1 cut(s)	777
Eco130I	CCWWGG	1 cut(s)	321
Eco31I	GGTCTC	2 cut(s)	612, 736
Eco32I	GATATC	1 cut(s)	409
Eco47I	GGWCC	1 cut(s)	365
Eco57I	CTGAAG	2 cut(s)	117, 736
EcoO109I	RGGNCCY	1 cut(s)	365
EcoRII	CCWGG	2 cut(s)	417, 804
EcoRV	GATATC	1 cut(s)	409
EcoT14I	CCWWGG	1 cut(s)	321
EcoT22I	ATGCAT	2 cut(s)	67, 282
ErhI	CCWWGG	1 cut(s)	321
FaeI	CATG	6 cut(s)	92, 251, 284, 548, 628, 667
FalI	AAGNNNNNCTT	2 cut(s)	305, 337
FaqI	GGGAC	2 cut(s)	161, 378
FatI	CATG	6 cut(s)	88, 247, 280, 544, 624, 663
FauI	CCCGC	2 cut(s)	448, 816
FauNDI	CATATG	1 cut(s)	763
Fnu4HI	GCNGC	3 cut(s)	223, 285, 758
FokI	GGATG	2 cut(s)	47, 289
Fsp4HI	GCNGC	3 cut(s)	223, 285, 758
GluI	GCNGC	3 cut(s)	223, 285, 758
GsuI	CTGGAG	1 cut(s)	594
HaeIII	GGCC	3 cut(s)	171, 402, 708
HapII	CCGG	2 cut(s)	32, 605
Hin1II	CATG	6 cut(s)	92, 251, 284, 548, 628, 667
HincII	GTYRAC	1 cut(s)	802
HindII	GTYRAC	1 cut(s)	802
HinfI	GANTC	3 cut(s)	42, 548, 576
HpaII	CCGG	2 cut(s)	32, 605
HphI	GGTGA	2 cut(s)	137, 433
Hpy166II	GTNNAC	1 cut(s)	802
Hpy188I	TCNGA	2 cut(s)	486, 672
Hpy188III	TCNNGA	5 cut(s)	50, 393, 689, 739, 860
Hpy8I	GTNNAC	1 cut(s)	802
HpyAV	CCTTC	3 cut(s)	92, 122, 654
HpyCH4III	ACNGT	1 cut(s)	185
HpyCH4IV	ACGT	1 cut(s)	431
HpyCH4V	TGCA	6 cut(s)	65, 269, 280, 287, 292, 656
HpyF10VI	GCNNNNNNNGC	6 cut(s)	62, 160, 248, 443, 452, 820
HpySE526I	ACGT	1 cut(s)	431
Hsp92II	CATG	6 cut(s)	92, 251, 284, 548, 628, 667
KflI	GGGWCCC	1 cut(s)	365
Kzo9I	GATC	5 cut(s)	46, 177, 194, 481, 886
LmnI	GCTCC	4 cut(s)	92, 566, 691, 826
Lsp1109I	GCAGC	3 cut(s)	234, 271, 744
LweI	GCATC	2 cut(s)	52, 267
MabI	ACCWGGT	2 cut(s)	417, 804
MaeII	ACGT	1 cut(s)	431
MaeIII	GTNAC	1 cut(s)	586
MalI	GATC	5 cut(s)	48, 179, 196, 483, 888
MboI	GATC	5 cut(s)	46, 177, 194, 481, 886
MboII	GAAGA	3 cut(s)	649, 742, 764
MhlI	GDGCHC	2 cut(s)	156, 498
MlsI	TGGCCA	1 cut(s)	402
MluCI	AATT	4 cut(s)	198, 510, 595, 816
MluNI	TGGCCA	1 cut(s)	402
MlyI	GAGTC	1 cut(s)	585
MmeI	TCCRAC	2 cut(s)	454, 817
MnlI	CCTC	5 cut(s)	319, 328, 632, 678, 780
Mox20I	TGGCCA	1 cut(s)	402
Mph1103I	ATGCAT	2 cut(s)	67, 282
MroXI	GAANNNNTTC	1 cut(s)	243
MscI	TGGCCA	1 cut(s)	402
MseI	TTAA	7 cut(s)	72, 201, 336, 426, 611, 651, 810
Msp20I	TGGCCA	1 cut(s)	402
MspI	CCGG	2 cut(s)	32, 605
MspR9I	CCNGG	3 cut(s)	419, 606, 806
Mva1269I	GAATGC	1 cut(s)	448
MvaI	CCWGG	2 cut(s)	419, 806
MwoI	GCNNNNNNNGC	6 cut(s)	62, 160, 248, 443, 452, 820
NciI	CCSGG	1 cut(s)	606
NdeI	CATATG	1 cut(s)	763
NdeII	GATC	5 cut(s)	46, 177, 194, 481, 886
NlaIII	CATG	6 cut(s)	92, 251, 284, 548, 628, 667
NlaIV	GGNNCC	5 cut(s)	366, 367, 560, 603, 693
NsiI	ATGCAT	2 cut(s)	67, 282
NspI	RCATGY	1 cut(s)	284
NspV	TTCGAA	1 cut(s)	345
PaeI	GCATGC	1 cut(s)	284
PctI	GAATGC	1 cut(s)	448
PdmI	GAANNNNTTC	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	42, 548
PkrI	GCNGC	3 cut(s)	224, 286, 759
PleI	GAGTC	1 cut(s)	584
PpsI	GAGTC	1 cut(s)	584
PpuMI	RGGWCCY	1 cut(s)	365
Psp5II	RGGWCCY	1 cut(s)	365
Psp6I	CCWGG	2 cut(s)	417, 804
PspGI	CCWGG	2 cut(s)	417, 804
PspN4I	GGNNCC	5 cut(s)	366, 367, 560, 603, 693
PspPI	GGNCC	1 cut(s)	365
PspPPI	RGGWCCY	1 cut(s)	365
RsaI	GTAC	1 cut(s)	768
RsaNI	GTAC	1 cut(s)	767
SaqAI	TTAA	7 cut(s)	72, 201, 336, 426, 611, 651, 810
SatI	GCNGC	3 cut(s)	223, 285, 758
Sau3AI	GATC	5 cut(s)	46, 177, 194, 481, 886
Sau96I	GGNCC	1 cut(s)	365
SchI	GAGTC	1 cut(s)	585
ScrFI	CCNGG	3 cut(s)	419, 606, 806
SduI	GDGCHC	2 cut(s)	156, 498
SexAI	ACCWGGT	2 cut(s)	417, 804
SfaNI	GCATC	2 cut(s)	52, 267
SfuI	TTCGAA	1 cut(s)	345
SinI	GGWCC	1 cut(s)	365
SphI	GCATGC	1 cut(s)	284
Sse9I	AATT	4 cut(s)	198, 510, 595, 816
SsiI	CCGC	3 cut(s)	242, 455, 823
StyD4I	CCNGG	3 cut(s)	417, 604, 804
StyI	CCWWGG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	185
TaiI	ACGT	1 cut(s)	434
TaqI	TCGA	3 cut(s)	45, 345, 889
TasI	AATT	4 cut(s)	198, 510, 595, 816
TfiI	GAWTC	2 cut(s)	42, 548
Tru1I	TTAA	7 cut(s)	72, 201, 336, 426, 611, 651, 810
Tru9I	TTAA	7 cut(s)	72, 201, 336, 426, 611, 651, 810
TscAI	CASTG	2 cut(s)	223, 294
TseI	GCWGC	3 cut(s)	222, 284, 757
TspDTI	ATGAA	2 cut(s)	236, 795
TspGWI	ACGGA	1 cut(s)	579
TspRI	CASTG	2 cut(s)	223, 294
VpaK11BI	GGWCC	1 cut(s)	365
XceI	RCATGY	1 cut(s)	284
XcmI	CCANNNNNNNNNTGG	1 cut(s)	569
XmnI	GAANNNNTTC	1 cut(s)	243
Zsp2I	ATGCAT	2 cut(s)	67, 282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.