Rw1G019790

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0012325
Physical Location & Seq
Forward (+)
43091773 .. 43093673
1901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G019790.1

Sequence Viewer

Length: 1068 bp
ATGGCGAGTTTGCAGAGCTGCAGCAGCGTGTGCCTGAGAGAGTCGGCTCTCTTGCTTCCGCGTCGCAATGTTAACGATAGCTACAAGAGTAGGACTGTAAAATGGAGGAGTCCACGAGGAGCTGTGCTGCCCAATTTTCATCTTCCGATGCGTAGTTTCGAAATTAAAAACAGGACATCTACAGAGGAGATAAAGTCACTTAGACTGATAACAGCCATCAAAACGCCATATCTACCGGATGGCAGATTTGATCTTGAAGCGTATGATGCATTGGTTAATACGCAGATTGAACATGGAGCTGAAGGTGTGATTGTTGGTGGCACAACGGGTGAAGGTCAGTTGATGAGTTGGGACGAGCACATAATGCTCATAGGCCACACGATCAACTGTTATGGTGGATCAATTAAGGGAAGCGTTCATGCTACTGAACAAGGGTTTGCAGTTGGGATGCATGCTGCACTGCACATCAATCCTTATTATGGAAAGACCTCCTTGGAGGGATTGGTTAAGCACTTCGAAAGGGTCTTATCTATGGGACCCACTATCATATACAATGTGCCATCACGAACTGGCCAAGATATCCCCCACCAGGTGATTAACACGTTGGCACAGAATGCCAACTTGGCGGGTGTCAAGGAGTGCGTTGGAAATGATCGGATTATAGAGCACATTGATAAGGGGATTGTGGTTTGGAGTGGGAATGATGATGAGTGCCATGATTCAAGGTGGAACCACGGAGCTACTGGAGTCATATCTGTTACTAGTAATTTGGTTCCGGGTTTAATGCGAGACCTCATGTTTGGGGGGAAGAACCCATCTCTTAATGCAAAGCTCATGCCTCTGATTGAGTGGCTTTTTCAGGAGCCAAACCCCATTGGCCTAAATACAGCACTTGCCCAACTTGGTGTCGTGAGACCAGTCTTCAGGCTGCCATATGTACCTCTTCCTTATGAAAAGAGAGTAGATTTTGTCAACCTGGTTAAGCAAATTGGGCGGGAGCATTTTGTTGGAGAAAAGGGTGTTCAAGTTCTTGATGATGATGACTTCACTTATTTGGATCGATATTAG

Protein Analysis

355

Amino Acids

39.46

Weight (kDa)

6.5

Isoelectric Point (pI)

41.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHDPS PF00701 67 - 329 4e-80 Dihydrodipicolinate synthetase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012325)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45440 AT3G60880 AT3G60880
fragaria_vesca FvH4_7g12060
malus_domestica MD02G1201600.v1.1
prunus_persica Prupe.2G147200_v2.0.a1
pyrus_communis pycom02g16500
rosa_chinensis RchiOBHm_Chr1g0350811 RchiOBHm_Chr7g0217051
rosa_laevigata RLG00000028454
rosa_multiflora Rmu_co8411727.1_g000001 Rmu_sc0006200.1_g000005 Rmu_sc0008591.1_g000006
rosa_roxburghii Rroxscaffold_4G00304500
rosa_rugosa Rorug01G0214100
rosa_samantha Rh1BG198700 Rh1CG213500 Rh1DG226600
rosa_wichuraiana Rw1G019790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 61
AciI CCGC 3 cut(s) 59, 626, 994
AclWI GGATC 2 cut(s) 406, 1065
AcoI YGGCCR 1 cut(s) 571
AcuI CTGAAG 2 cut(s) 321, 907
AdeI CACNNNGTG 1 cut(s) 592
AfaI GTAC 1 cut(s) 939
AfiI CCNNNNNNNGG 2 cut(s) 479, 589
AflIII ACRYGT 1 cut(s) 600
AgsI TTSAA 4 cut(s) 257, 290, 723, 1025
AhlI ACTAGT 1 cut(s) 761
AjnI CCWGG 2 cut(s) 588, 975
AjuI GAANNNNNNNTTGG 2 cut(s) 605, 637
AluBI AGCT 6 cut(s) 18, 81, 122, 299, 740, 832
AluI AGCT 6 cut(s) 18, 81, 122, 299, 740, 832
Alw21I GWGCWC 2 cut(s) 360, 669
Alw26I GTCTC 2 cut(s) 783, 907
AlwI GGATC 2 cut(s) 406, 1065
AoxI GGCC 3 cut(s) 373, 571, 877
ApeKI GCWGC 6 cut(s) 18, 21, 24, 127, 455, 928
ArsI GACNNNNNNTTYG 2 cut(s) 782, 814
AspS9I GGNCC 1 cut(s) 536
AsuC2I CCSGG 1 cut(s) 777
AsuHPI GGTGA 2 cut(s) 341, 604
AsuII TTCGAA 2 cut(s) 159, 516
AvaII GGWCC 1 cut(s) 536
BalI TGGCCA 1 cut(s) 573
BauI CACGAG 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 913
Bbv12I GWGCWC 2 cut(s) 360, 669
BbvI GCAGC 6 cut(s) 5, 33, 36, 114, 442, 915
BccI CCATC 4 cut(s) 224, 233, 568, 823
BciT130I CCWGG 2 cut(s) 590, 977
BcnI CCSGG 1 cut(s) 777
BcoDI GTCTC 2 cut(s) 783, 907
BcuI ACTAGT 1 cut(s) 761
BfaI CTAG 1 cut(s) 762
BfmI CTRYAG 2 cut(s) 19, 180
BglI GCCNNNNNGGC 1 cut(s) 623
BisI GCNGC 6 cut(s) 19, 22, 25, 128, 456, 929
BlsI GCNGC 6 cut(s) 20, 23, 26, 129, 457, 930
Bme1390I CCNGG 3 cut(s) 590, 777, 977
Bme18I GGWCC 1 cut(s) 536
BmgT120I GGNCC 1 cut(s) 536
BmiI GGNNCC 5 cut(s) 537, 538, 731, 774, 864
BmrFI CCNGG 3 cut(s) 590, 777, 977
BmsI GCATC 3 cut(s) 138, 256, 438
BpiI GAAGAC 1 cut(s) 913
BpmI CTGGAG 1 cut(s) 765
Bpu14I TTCGAA 2 cut(s) 159, 516
BpuMI CCSGG 1 cut(s) 777
Bsa29I ATCGAT 1 cut(s) 1060
BsaI GGTCTC 2 cut(s) 783, 907
BsaJI CCNNGG 2 cut(s) 492, 733
BsaWI WCCGGW 1 cut(s) 235
BsaXI ACNNNNNCTCC 2 cut(s) 179, 209
Bsc4I CCNNNNNNNGG 2 cut(s) 479, 589
Bse1I ACTGG 3 cut(s) 574, 748, 917
Bse3DI GCAATG 1 cut(s) 73
BseBI CCWGG 2 cut(s) 590, 977
BseCI ATCGAT 1 cut(s) 1060
BseDI CCNNGG 2 cut(s) 492, 733
BseGI GGATG 2 cut(s) 244, 453
BseLI CCNNNNNNNGG 2 cut(s) 479, 589
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 26
BseNI ACTGG 3 cut(s) 574, 748, 917
BseRI GAGGAG 3 cut(s) 121, 132, 200
BseXI GCAGC 6 cut(s) 5, 33, 36, 114, 442, 915
BsgI GTGCAG 2 cut(s) 441, 446
Bsh1236I CGCG 1 cut(s) 61
BshFI GGCC 3 cut(s) 375, 573, 879
BshVI ATCGAT 1 cut(s) 1060
BsiHKAI GWGCWC 2 cut(s) 360, 669
BsiSI CCGG 2 cut(s) 236, 776
BslFI GGGAC 2 cut(s) 365, 549
BslI CCNNNNNNNGG 2 cut(s) 479, 589
BsmAI GTCTC 2 cut(s) 783, 907
BsmFI GGGAC 2 cut(s) 365, 549
BsmI GAATGC 1 cut(s) 619
BsnI GGCC 3 cut(s) 375, 573, 879
Bso31I GGTCTC 2 cut(s) 783, 907
Bsp119I TTCGAA 2 cut(s) 159, 516
Bsp1286I GDGCHC 2 cut(s) 360, 669
Bsp143I GATC 5 cut(s) 250, 381, 398, 652, 1057
BspACI CCGC 3 cut(s) 59, 626, 994
BspANI GGCC 3 cut(s) 375, 573, 879
BspCNI CTCAG 1 cut(s) 27
BspDI ATCGAT 1 cut(s) 1060
BspFNI CGCG 1 cut(s) 61
BspLI GGNNCC 5 cut(s) 537, 538, 731, 774, 864
BspMAI CTGCAG 1 cut(s) 23
BspPI GGATC 2 cut(s) 406, 1065
BspT104I TTCGAA 2 cut(s) 159, 516
BspTNI GGTCTC 2 cut(s) 783, 907
BsrDI GCAATG 1 cut(s) 73
BsrI ACTGG 3 cut(s) 574, 748, 917
BssECI CCNNGG 2 cut(s) 492, 733
BssMI GATC 5 cut(s) 250, 381, 398, 652, 1057
BssSI CACGAG 1 cut(s) 114
BssT1I CCWWGG 1 cut(s) 492
Bst2BI CACGAG 1 cut(s) 114
Bst2UI CCWGG 2 cut(s) 590, 977
Bst4CI ACNGT 2 cut(s) 97, 389
Bst6I CTCTTC 1 cut(s) 948
BstAPI GCANNNNNTGC 3 cut(s) 30, 364, 614
BstBI TTCGAA 2 cut(s) 159, 516
BstC8I GCNNGC 1 cut(s) 453
BstDEI CTNAG 2 cut(s) 35, 200
BstDSI CCRYGG 1 cut(s) 733
BstF5I GGATG 2 cut(s) 244, 453
BstFNI CGCG 1 cut(s) 61
BstKTI GATC 5 cut(s) 253, 384, 401, 655, 1060
BstMAI GTCTC 2 cut(s) 783, 907
BstMBI GATC 5 cut(s) 250, 381, 398, 652, 1057
BstMWI GCNNNNNNNGC 7 cut(s) 24, 30, 266, 364, 614, 623, 991
BstNI CCWGG 2 cut(s) 590, 977
BstNSI RCATGY 1 cut(s) 455
BstSCI CCNGG 3 cut(s) 588, 775, 975
BstSFI CTRYAG 2 cut(s) 19, 180
BstUI CGCG 1 cut(s) 61
BstV1I GCAGC 6 cut(s) 5, 33, 36, 114, 442, 915
BstV2I GAAGAC 1 cut(s) 913
Bsu15I ATCGAT 1 cut(s) 1060
BsuRI GGCC 3 cut(s) 375, 573, 879
BsuTUI ATCGAT 1 cut(s) 1060
BtgI CCRYGG 1 cut(s) 733
BtsCI GGATG 2 cut(s) 244, 453
BtsI GCAGTG 1 cut(s) 458
BtsIMutI CAGTG 1 cut(s) 458
Cac8I GCNNGC 1 cut(s) 453
Cfr13I GGNCC 1 cut(s) 536
ClaI ATCGAT 1 cut(s) 1060
CseI GACGC 1 cut(s) 50
CsiI ACCWGGT 2 cut(s) 588, 975
Csp6I GTAC 1 cut(s) 938
CviAII CATG 6 cut(s) 293, 419, 452, 716, 796, 835
CviQI GTAC 1 cut(s) 938
DdeI CTNAG 2 cut(s) 35, 200
DpnI GATC 5 cut(s) 252, 383, 400, 654, 1059
DpnII GATC 5 cut(s) 250, 381, 398, 652, 1057
DraIII CACNNNGTG 1 cut(s) 592
EaeI YGGCCR 1 cut(s) 571
Eam1104I CTCTTC 1 cut(s) 948
EarI CTCTTC 1 cut(s) 948
Eco130I CCWWGG 1 cut(s) 492
Eco31I GGTCTC 2 cut(s) 783, 907
Eco32I GATATC 1 cut(s) 580
Eco47I GGWCC 1 cut(s) 536
Eco57I CTGAAG 2 cut(s) 321, 907
EcoO109I RGGNCCY 1 cut(s) 536
EcoRII CCWGG 2 cut(s) 588, 975
EcoRV GATATC 1 cut(s) 580
EcoT14I CCWWGG 1 cut(s) 492
EcoT22I ATGCAT 2 cut(s) 271, 453
ErhI CCWWGG 1 cut(s) 492
FaeI CATG 6 cut(s) 296, 422, 455, 719, 799, 838
FalI AAGNNNNNCTT 2 cut(s) 476, 508
FaqI GGGAC 2 cut(s) 365, 549
FatI CATG 6 cut(s) 292, 418, 451, 715, 795, 834
FauI CCCGC 2 cut(s) 619, 987
FauNDI CATATG 1 cut(s) 934
Fnu4HI GCNGC 6 cut(s) 19, 22, 25, 128, 456, 929
FokI GGATG 2 cut(s) 251, 460
Fsp4HI GCNGC 6 cut(s) 19, 22, 25, 128, 456, 929
FspBI CTAG 1 cut(s) 762
GluI GCNGC 6 cut(s) 19, 22, 25, 128, 456, 929
GsuI CTGGAG 1 cut(s) 765
HaeIII GGCC 3 cut(s) 375, 573, 879
HapII CCGG 2 cut(s) 236, 776
HgaI GACGC 1 cut(s) 50
Hin1II CATG 6 cut(s) 296, 422, 455, 719, 799, 838
HincII GTYRAC 2 cut(s) 73, 973
HindII GTYRAC 2 cut(s) 73, 973
HinfI GANTC 4 cut(s) 41, 109, 719, 747
HpaI GTTAAC 1 cut(s) 73
HpaII CCGG 2 cut(s) 236, 776
HphI GGTGA 2 cut(s) 341, 604
Hpy166II GTNNAC 3 cut(s) 73, 113, 973
Hpy188I TCNGA 3 cut(s) 147, 657, 843
Hpy188III TCNNGA 5 cut(s) 254, 564, 860, 910, 1031
Hpy8I GTNNAC 3 cut(s) 73, 113, 973
Hpy99I CGWCG 1 cut(s) 66
HpyAV CCTTC 2 cut(s) 296, 326
HpyCH4III ACNGT 2 cut(s) 97, 389
HpyCH4IV ACGT 1 cut(s) 602
HpyCH4V TGCA 8 cut(s) 13, 21, 269, 440, 451, 458, 463, 827
HpyF10VI GCNNNNNNNGC 7 cut(s) 24, 30, 266, 364, 614, 623, 991
HpyF3I CTNAG 2 cut(s) 35, 200
HpySE526I ACGT 1 cut(s) 602
Hsp92II CATG 6 cut(s) 296, 422, 455, 719, 799, 838
KflI GGGWCCC 1 cut(s) 536
KspAI GTTAAC 1 cut(s) 73
Kzo9I GATC 5 cut(s) 250, 381, 398, 652, 1057
LmnI GCTCC 5 cut(s) 119, 296, 737, 862, 997
Lsp1109I GCAGC 6 cut(s) 5, 33, 36, 114, 442, 915
LweI GCATC 3 cut(s) 138, 256, 438
MabI ACCWGGT 2 cut(s) 588, 975
MaeI CTAG 1 cut(s) 762
MaeII ACGT 1 cut(s) 602
MaeIII GTNAC 2 cut(s) 195, 757
MalI GATC 5 cut(s) 252, 383, 400, 654, 1059
MboI GATC 5 cut(s) 250, 381, 398, 652, 1057
MboII GAAGA 4 cut(s) 134, 820, 913, 935
MhlI GDGCHC 2 cut(s) 360, 669
MlsI TGGCCA 1 cut(s) 573
MluCI AATT 5 cut(s) 133, 162, 402, 766, 987
MluNI TGGCCA 1 cut(s) 573
MlyI GAGTC 3 cut(s) 50, 118, 756
MmeI TCCRAC 2 cut(s) 625, 988
MnlI CCTC 8 cut(s) 99, 110, 178, 490, 499, 803, 849, 951
Mox20I TGGCCA 1 cut(s) 573
Mph1103I ATGCAT 2 cut(s) 271, 453
MscI TGGCCA 1 cut(s) 573
MseI TTAA 9 cut(s) 72, 165, 276, 405, 507, 597, 782, 822, 981
Msp20I TGGCCA 1 cut(s) 573
MspI CCGG 2 cut(s) 236, 776
MspR9I CCNGG 3 cut(s) 590, 777, 977
Mva1269I GAATGC 1 cut(s) 619
MvaI CCWGG 2 cut(s) 590, 977
MvnI CGCG 1 cut(s) 61
MwoI GCNNNNNNNGC 7 cut(s) 24, 30, 266, 364, 614, 623, 991
NciI CCSGG 1 cut(s) 777
NdeI CATATG 1 cut(s) 934
NdeII GATC 5 cut(s) 250, 381, 398, 652, 1057
NlaIII CATG 6 cut(s) 296, 422, 455, 719, 799, 838
NlaIV GGNNCC 5 cut(s) 537, 538, 731, 774, 864
NmuCI GTSAC 1 cut(s) 195
NsiI ATGCAT 2 cut(s) 271, 453
NspI RCATGY 1 cut(s) 455
NspV TTCGAA 2 cut(s) 159, 516
PaeI GCATGC 1 cut(s) 455
PctI GAATGC 1 cut(s) 619
PfeI GAWTC 1 cut(s) 719
PkrI GCNGC 6 cut(s) 20, 23, 26, 129, 457, 930
PleI GAGTC 3 cut(s) 49, 117, 755
PpsI GAGTC 3 cut(s) 49, 117, 755
PpuMI RGGWCCY 1 cut(s) 536
Psp5II RGGWCCY 1 cut(s) 536
Psp6I CCWGG 2 cut(s) 588, 975
PspGI CCWGG 2 cut(s) 588, 975
PspN4I GGNNCC 5 cut(s) 537, 538, 731, 774, 864
PspPI GGNCC 1 cut(s) 536
PspPPI RGGWCCY 1 cut(s) 536
PstI CTGCAG 1 cut(s) 23
RsaI GTAC 1 cut(s) 939
RsaNI GTAC 1 cut(s) 938
SaqAI TTAA 9 cut(s) 72, 165, 276, 405, 507, 597, 782, 822, 981
SatI GCNGC 6 cut(s) 19, 22, 25, 128, 456, 929
Sau3AI GATC 5 cut(s) 250, 381, 398, 652, 1057
Sau96I GGNCC 1 cut(s) 536
SchI GAGTC 3 cut(s) 50, 118, 756
ScrFI CCNGG 3 cut(s) 590, 777, 977
SduI GDGCHC 2 cut(s) 360, 669
SexAI ACCWGGT 2 cut(s) 588, 975
SfaNI GCATC 3 cut(s) 138, 256, 438
SfcI CTRYAG 2 cut(s) 19, 180
SfuI TTCGAA 2 cut(s) 159, 516
SinI GGWCC 1 cut(s) 536
SpeI ACTAGT 1 cut(s) 761
SphI GCATGC 1 cut(s) 455
Sse9I AATT 5 cut(s) 133, 162, 402, 766, 987
SsiI CCGC 3 cut(s) 59, 626, 994
SspMI CTAG 1 cut(s) 762
StyD4I CCNGG 3 cut(s) 588, 775, 975
StyI CCWWGG 1 cut(s) 492
TaaI ACNGT 2 cut(s) 97, 389
TaiI ACGT 1 cut(s) 605
TaqI TCGA 3 cut(s) 159, 516, 1060
TasI AATT 5 cut(s) 133, 162, 402, 766, 987
TfiI GAWTC 1 cut(s) 719
Tru1I TTAA 9 cut(s) 72, 165, 276, 405, 507, 597, 782, 822, 981
Tru9I TTAA 9 cut(s) 72, 165, 276, 405, 507, 597, 782, 822, 981
TscAI CASTG 1 cut(s) 465
TseFI GTSAC 1 cut(s) 195
TseI GCWGC 6 cut(s) 18, 21, 24, 127, 455, 928
Tsp45I GTSAC 1 cut(s) 195
TspDTI ATGAA 3 cut(s) 128, 407, 966
TspGWI ACGGA 1 cut(s) 750
TspRI CASTG 1 cut(s) 465
VpaK11BI GGWCC 1 cut(s) 536
XceI RCATGY 1 cut(s) 455
XcmI CCANNNNNNNNNTGG 1 cut(s) 740
XspI CTAG 1 cut(s) 762
Zsp2I ATGCAT 2 cut(s) 271, 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.