Prupe.2G147200_v2.0.a1

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0012325
Physical Location & Seq
Forward (+)
20354589 .. 20357083
2495 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G147200.1

Sequence Viewer

Length: 1098 bp
ATGGCTACGCTCCAGAGCTGTAGAGTGTGCTTGAGAGAGTCTGCTCTCCAGCTTCCGCGTCACCATCTTACCGATAACTACAGGAGTAGGACTGCAAAATGGAAGTGTCCGCGAGCAGCTGTAATCCCCAATTTTCATCTTCCAATGCGTAGTTTTGAAGTGAAAAACAGGACATCAGTGGACGATATAAAGTCACTTAGATTGATAACAGCCATCAAAACCCCATATCTACCAGACGGCAGATTTGACCTTGAAGCATATGATGCTTTGGTTAATATGCAGATTGAAAATGGAGCCGAAGGTGTGATTGTTGGTGGCACAACTGGTGAAGGCCAATTGATGAGCTGGGATGAACACATAATGCTCATTGGCCACACAATCAACTGTTATGGAGGATCAATTAAGGTAATAGGGAACACTGGAAGCAATTCTACTAGAGAAGCAATTCATGCTACTGAACAGGGTTTTGCTGTTGGAATGCATGCTGCCCTTCACATCAATCCTTATTATGGAAAAACCTCCTTGGAGGGATTGGTTTCGCACCTTGATAGTGTCATGTCAATGGGACCCACTATTGTATACAATGTGCCATCACGAACTGGCCAAGATATCCCCCCACGTGTGATTCACAGGTTGGCTCAGAGCTCTAACTTCGCAGGTGTCAAGGAGTGTGTTGGAAATGATCGTGTTGATCAGTATACCGACAAGGGAATTGTGGTTTGGAGTGGGAATGATGATGAGTGCCATGATTCTAGGTGGAACCATGGAGCTACTGGAGTTATATCTGTTACTAGTAATCTGGTTCCAGGTTTAATGCGAGAATTGATGTTTGGGGGGAAGAACCCTTCTCTTAATGCAAAGATAATGCCTCTGGTTGAGTGGCTTTTCCAAGAGCCAAACCCCATTGGCTTAAACACAGCACTTGCCCAACTTGGTGTTGTGAGGCCGGTCTTCAGGCTGCCATATGTACCTCTTCCTCTTGCAAAGAGGGTAGAATTTGTGAATTTGGTTGAGCAAATTGGGCGGGAGAATTTTGTCGGAGAAAAGGATGTGAAAGTTCTCGATGACGATGATTTCGTCTTAGTGAGTCGGTATTAG

Protein Analysis

366

Amino Acids

40.41

Weight (kDa)

6.46

Isoelectric Point (pI)

36.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012325)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45440 AT3G60880 AT3G60880
fragaria_vesca FvH4_7g12060
malus_domestica MD02G1201600.v1.1
prunus_persica Prupe.2G147200_v2.0.a1
pyrus_communis pycom02g16500
rosa_chinensis RchiOBHm_Chr1g0350811 RchiOBHm_Chr7g0217051
rosa_laevigata RLG00000028454
rosa_multiflora Rmu_co8411727.1_g000001 Rmu_sc0006200.1_g000005 Rmu_sc0008591.1_g000006
rosa_roxburghii Rroxscaffold_4G00304500
rosa_rugosa Rorug01G0214100
rosa_samantha Rh1BG198700 Rh1CG213500 Rh1DG226600
rosa_wichuraiana Rw1G019790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 647
Acc36I ACCTGC 1 cut(s) 647
AccI GTMKAC 2 cut(s) 579, 698
AccII CGCG 2 cut(s) 58, 112
AciI CCGC 3 cut(s) 56, 110, 1024
AclWI GGATC 1 cut(s) 403
AcoI YGGCCR 2 cut(s) 370, 601
AcsI RAATTY 3 cut(s) 995, 1003, 1030
AcuI CTGAAG 1 cut(s) 937
AcvI CACGTG 1 cut(s) 620
AfaI GTAC 1 cut(s) 969
AfiI CCNNNNNNNGG 1 cut(s) 509
AflIII ACRYGT 1 cut(s) 619
AgsI TTSAA 3 cut(s) 158, 254, 287
AhlI ACTAGT 1 cut(s) 791
AjnI CCWGG 1 cut(s) 805
AjuI GAANNNNNNNTTGG 4 cut(s) 703, 735, 813, 845
AluBI AGCT 6 cut(s) 18, 52, 119, 345, 645, 770
AluI AGCT 6 cut(s) 18, 52, 119, 345, 645, 770
Alw21I GWGCWC 1 cut(s) 647
AlwI GGATC 1 cut(s) 403
AoxI GGCC 4 cut(s) 331, 370, 601, 944
ApeKI GCWGC 3 cut(s) 116, 485, 958
ApoI RAATTY 3 cut(s) 995, 1003, 1030
ArsI GACNNNNNNTTYG 4 cut(s) 227, 259, 1058, 1090
Asp700I GAANNNNTTC 2 cut(s) 427, 444
AspS9I GGNCC 1 cut(s) 566
AsuHPI GGTGA 2 cut(s) 53, 338
AvaII GGWCC 1 cut(s) 566
BalI TGGCCA 2 cut(s) 372, 603
BanII GRGCYC 1 cut(s) 647
BarI GAAGNNNNNNTAC 2 cut(s) 415, 447
BbrPI CACGTG 1 cut(s) 620
BbsI GAAGAC 1 cut(s) 943
Bbv12I GWGCWC 1 cut(s) 647
BbvI GCAGC 3 cut(s) 128, 472, 945
BccI CCATC 3 cut(s) 72, 221, 598
BceAI ACGGC 1 cut(s) 253
BciT130I CCWGG 1 cut(s) 807
BclI TGATCA 1 cut(s) 691
BcuI ACTAGT 1 cut(s) 791
BfaI CTAG 3 cut(s) 435, 753, 792
BfmI CTRYAG 2 cut(s) 19, 79
BfuAI ACCTGC 1 cut(s) 647
BisI GCNGC 3 cut(s) 117, 486, 959
BlsI GCNGC 3 cut(s) 118, 487, 960
Bme1390I CCNGG 1 cut(s) 807
Bme18I GGWCC 1 cut(s) 566
BmgT120I GGNCC 1 cut(s) 566
BmiI GGNNCC 5 cut(s) 295, 567, 568, 761, 804
BmrFI CCNGG 1 cut(s) 807
BmsI GCATC 1 cut(s) 253
BpiI GAAGAC 1 cut(s) 943
BpmI CTGGAG 2 cut(s) 32, 795
BpuEI CTTGAG 1 cut(s) 52
BsaAI YACGTR 1 cut(s) 620
BsaJI CCNNGG 2 cut(s) 522, 763
Bsc4I CCNNNNNNNGG 1 cut(s) 509
Bse118I RCCGGY 1 cut(s) 946
Bse1I ACTGG 4 cut(s) 328, 424, 604, 778
BseBI CCWGG 1 cut(s) 807
BseDI CCNNGG 2 cut(s) 522, 763
BseGI GGATG 2 cut(s) 355, 1054
BseLI CCNNNNNNNGG 1 cut(s) 509
BseMII CTCAG 1 cut(s) 653
BseNI ACTGG 4 cut(s) 328, 424, 604, 778
BseXI GCAGC 3 cut(s) 128, 472, 945
BseYI CCCAGC 1 cut(s) 345
Bsh1236I CGCG 2 cut(s) 58, 112
BshFI GGCC 4 cut(s) 333, 372, 603, 946
BsiHKAI GWGCWC 1 cut(s) 647
BsiSI CCGG 1 cut(s) 947
BslFI GGGAC 1 cut(s) 579
BslI CCNNNNNNNGG 1 cut(s) 509
BsmFI GGGAC 1 cut(s) 579
BsmI GAATGC 1 cut(s) 483
BsnI GGCC 4 cut(s) 333, 372, 603, 946
Bsp1286I GDGCHC 1 cut(s) 647
Bsp143I GATC 3 cut(s) 395, 682, 691
Bsp19I CCATGG 1 cut(s) 763
BspACI CCGC 3 cut(s) 56, 110, 1024
BspANI GGCC 4 cut(s) 333, 372, 603, 946
BspCNI CTCAG 1 cut(s) 652
BspFNI CGCG 2 cut(s) 58, 112
BspLI GGNNCC 5 cut(s) 295, 567, 568, 761, 804
BspMI ACCTGC 1 cut(s) 647
BspPI GGATC 1 cut(s) 403
BsrFI RCCGGY 1 cut(s) 946
BsrI ACTGG 4 cut(s) 328, 424, 604, 778
BssAI RCCGGY 1 cut(s) 946
BssECI CCNNGG 2 cut(s) 522, 763
BssMI GATC 3 cut(s) 395, 682, 691
BssNAI GTATAC 2 cut(s) 580, 699
BssT1I CCWWGG 2 cut(s) 522, 763
Bst1107I GTATAC 2 cut(s) 580, 699
Bst2UI CCWGG 1 cut(s) 807
Bst4CI ACNGT 1 cut(s) 386
Bst6I CTCTTC 1 cut(s) 978
BstAPI GCANNNNNTGC 2 cut(s) 263, 449
BstBAI YACGTR 1 cut(s) 620
BstC8I GCNNGC 2 cut(s) 114, 483
BstDEI CTNAG 3 cut(s) 197, 639, 1081
BstDSI CCRYGG 1 cut(s) 763
BstF5I GGATG 2 cut(s) 355, 1054
BstFNI CGCG 2 cut(s) 58, 112
BstKTI GATC 3 cut(s) 398, 685, 694
BstMBI GATC 3 cut(s) 395, 682, 691
BstMWI GCNNNNNNNGC 3 cut(s) 263, 449, 1021
BstNI CCWGG 1 cut(s) 807
BstNSI RCATGY 1 cut(s) 485
BstSCI CCNGG 1 cut(s) 805
BstSFI CTRYAG 2 cut(s) 19, 79
BstUI CGCG 2 cut(s) 58, 112
BstV1I GCAGC 3 cut(s) 128, 472, 945
BstV2I GAAGAC 1 cut(s) 943
BstZ17I GTATAC 2 cut(s) 580, 699
BsuRI GGCC 4 cut(s) 333, 372, 603, 946
BtgI CCRYGG 1 cut(s) 763
BtsCI GGATG 2 cut(s) 355, 1054
BtsIMutI CAGTG 2 cut(s) 183, 417
BveI ACCTGC 1 cut(s) 647
Cac8I GCNNGC 2 cut(s) 114, 483
Cfr10I RCCGGY 1 cut(s) 946
Cfr13I GGNCC 1 cut(s) 566
CseI GACGC 1 cut(s) 47
Csp6I GTAC 1 cut(s) 968
CviAII CATG 5 cut(s) 449, 482, 556, 746, 764
CviQI GTAC 1 cut(s) 968
DdeI CTNAG 3 cut(s) 197, 639, 1081
DpnI GATC 3 cut(s) 397, 684, 693
DpnII GATC 3 cut(s) 395, 682, 691
EaeI YGGCCR 2 cut(s) 370, 601
Eam1104I CTCTTC 1 cut(s) 978
EarI CTCTTC 1 cut(s) 978
Ecl136II GAGCTC 1 cut(s) 645
Eco130I CCWWGG 2 cut(s) 522, 763
Eco24I GRGCYC 1 cut(s) 647
Eco32I GATATC 1 cut(s) 610
Eco47I GGWCC 1 cut(s) 566
Eco53kI GAGCTC 1 cut(s) 645
Eco57I CTGAAG 1 cut(s) 937
Eco72I CACGTG 1 cut(s) 620
EcoICRI GAGCTC 1 cut(s) 645
EcoO109I RGGNCCY 1 cut(s) 566
EcoRII CCWGG 1 cut(s) 805
EcoRV GATATC 1 cut(s) 610
EcoT14I CCWWGG 2 cut(s) 522, 763
EcoT22I ATGCAT 1 cut(s) 483
EcoT38I GRGCYC 1 cut(s) 647
ErhI CCWWGG 2 cut(s) 522, 763
FaeI CATG 5 cut(s) 452, 485, 559, 749, 767
FaqI GGGAC 1 cut(s) 579
FatI CATG 5 cut(s) 448, 481, 555, 745, 763
FauI CCCGC 1 cut(s) 1017
FauNDI CATATG 2 cut(s) 259, 964
FbaI TGATCA 1 cut(s) 691
FblI GTMKAC 2 cut(s) 579, 698
Fnu4HI GCNGC 3 cut(s) 117, 486, 959
FokI GGATG 2 cut(s) 362, 1061
FriOI GRGCYC 1 cut(s) 647
Fsp4HI GCNGC 3 cut(s) 117, 486, 959
FspBI CTAG 3 cut(s) 435, 753, 792
GluI GCNGC 3 cut(s) 117, 486, 959
GsaI CCCAGC 1 cut(s) 349
GsuI CTGGAG 2 cut(s) 32, 795
HaeIII GGCC 4 cut(s) 333, 372, 603, 946
HapII CCGG 1 cut(s) 947
HgaI GACGC 1 cut(s) 47
Hin1II CATG 5 cut(s) 452, 485, 559, 749, 767
HinfI GANTC 4 cut(s) 38, 625, 749, 1087
HpaII CCGG 1 cut(s) 947
HphI GGTGA 2 cut(s) 53, 338
Hpy166II GTNNAC 3 cut(s) 181, 580, 699
Hpy188I TCNGA 2 cut(s) 642, 1040
Hpy188III TCNNGA 3 cut(s) 13, 594, 1061
Hpy8I GTNNAC 3 cut(s) 181, 580, 699
HpyAV CCTTC 4 cut(s) 293, 323, 500, 855
HpyCH4III ACNGT 1 cut(s) 386
HpyCH4IV ACGT 1 cut(s) 619
HpyCH4V TGCA 5 cut(s) 95, 280, 481, 857, 983
HpyF10VI GCNNNNNNNGC 3 cut(s) 263, 449, 1021
HpyF3I CTNAG 3 cut(s) 197, 639, 1081
HpySE526I ACGT 1 cut(s) 619
Hsp92II CATG 5 cut(s) 452, 485, 559, 749, 767
KflI GGGWCCC 1 cut(s) 566
Ksp22I TGATCA 1 cut(s) 691
Kzo9I GATC 3 cut(s) 395, 682, 691
LmnI GCTCC 3 cut(s) 15, 293, 767
Lsp1109I GCAGC 3 cut(s) 128, 472, 945
LweI GCATC 1 cut(s) 253
MaeI CTAG 3 cut(s) 435, 753, 792
MaeII ACGT 1 cut(s) 619
MaeIII GTNAC 3 cut(s) 59, 192, 787
MalI GATC 3 cut(s) 397, 684, 693
MboI GATC 3 cut(s) 395, 682, 691
MboII GAAGA 4 cut(s) 131, 850, 943, 965
MfeI CAATTG 1 cut(s) 335
MhlI GDGCHC 1 cut(s) 647
MlsI TGGCCA 2 cut(s) 372, 603
MluNI TGGCCA 2 cut(s) 372, 603
MlyI GAGTC 2 cut(s) 47, 1096
MmeI TCCRAC 3 cut(s) 454, 655, 1018
MnlI CCTC 8 cut(s) 386, 520, 529, 879, 936, 981, 981, 987
Mox20I TGGCCA 2 cut(s) 372, 603
Mph1103I ATGCAT 1 cut(s) 483
MroXI GAANNNNTTC 2 cut(s) 427, 444
MscI TGGCCA 2 cut(s) 372, 603
MseI TTAA 5 cut(s) 273, 402, 812, 852, 911
MslI CAYNNNNRTG 1 cut(s) 560
Msp20I TGGCCA 2 cut(s) 372, 603
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 1 cut(s) 947
MspR9I CCNGG 1 cut(s) 807
MunI CAATTG 1 cut(s) 335
Mva1269I GAATGC 1 cut(s) 483
MvaI CCWGG 1 cut(s) 807
MvnI CGCG 2 cut(s) 58, 112
MwoI GCNNNNNNNGC 3 cut(s) 263, 449, 1021
NcoI CCATGG 1 cut(s) 763
NdeI CATATG 2 cut(s) 259, 964
NdeII GATC 3 cut(s) 395, 682, 691
NlaIII CATG 5 cut(s) 452, 485, 559, 749, 767
NlaIV GGNNCC 5 cut(s) 295, 567, 568, 761, 804
NmuCI GTSAC 2 cut(s) 59, 192
NsiI ATGCAT 1 cut(s) 483
NspI RCATGY 1 cut(s) 485
PaeI GCATGC 1 cut(s) 485
PaqCI CACCTGC 1 cut(s) 647
PcsI WCGNNNNNNNCGW 1 cut(s) 1074
PctI GAATGC 1 cut(s) 483
PdmI GAANNNNTTC 2 cut(s) 427, 444
PfeI GAWTC 2 cut(s) 625, 749
PkrI GCNGC 3 cut(s) 118, 487, 960
PleI GAGTC 2 cut(s) 46, 1095
PmaCI CACGTG 1 cut(s) 620
PmlI CACGTG 1 cut(s) 620
PpsI GAGTC 2 cut(s) 46, 1095
Ppu21I YACGTR 1 cut(s) 620
PpuMI RGGWCCY 1 cut(s) 566
Psp124BI GAGCTC 1 cut(s) 647
Psp5II RGGWCCY 1 cut(s) 566
Psp6I CCWGG 1 cut(s) 805
PspCI CACGTG 1 cut(s) 620
PspFI CCCAGC 1 cut(s) 345
PspGI CCWGG 1 cut(s) 805
PspN4I GGNNCC 5 cut(s) 295, 567, 568, 761, 804
PspPI GGNCC 1 cut(s) 566
PspPPI RGGWCCY 1 cut(s) 566
PvuII CAGCTG 1 cut(s) 119
RsaI GTAC 1 cut(s) 969
RsaNI GTAC 1 cut(s) 968
RseI CAYNNNNRTG 1 cut(s) 560
SacI GAGCTC 1 cut(s) 647
SaqAI TTAA 5 cut(s) 273, 402, 812, 852, 911
SatI GCNGC 3 cut(s) 117, 486, 959
Sau3AI GATC 3 cut(s) 395, 682, 691
Sau96I GGNCC 1 cut(s) 566
SchI GAGTC 2 cut(s) 47, 1096
ScrFI CCNGG 1 cut(s) 807
SduI GDGCHC 1 cut(s) 647
SfaNI GCATC 1 cut(s) 253
SfcI CTRYAG 2 cut(s) 19, 79
SinI GGWCC 1 cut(s) 566
SmiMI CAYNNNNRTG 1 cut(s) 560
SmlI CTYRAG 1 cut(s) 31
SmoI CTYRAG 1 cut(s) 31
SpeI ACTAGT 1 cut(s) 791
SphI GCATGC 1 cut(s) 485
SsiI CCGC 3 cut(s) 56, 110, 1024
SspMI CTAG 3 cut(s) 435, 753, 792
SstI GAGCTC 1 cut(s) 647
StyD4I CCNGG 1 cut(s) 805
StyI CCWWGG 2 cut(s) 522, 763
TaaI ACNGT 1 cut(s) 386
TaiI ACGT 1 cut(s) 622
TaqI TCGA 1 cut(s) 1062
TfiI GAWTC 2 cut(s) 625, 749
Tru1I TTAA 5 cut(s) 273, 402, 812, 852, 911
Tru9I TTAA 5 cut(s) 273, 402, 812, 852, 911
TscAI CASTG 2 cut(s) 183, 424
TseFI GTSAC 2 cut(s) 59, 192
TseI GCWGC 3 cut(s) 116, 485, 958
Tsp45I GTSAC 2 cut(s) 59, 192
TspDTI ATGAA 3 cut(s) 125, 366, 437
TspRI CASTG 2 cut(s) 183, 424
VpaK11BI GGWCC 1 cut(s) 566
XapI RAATTY 3 cut(s) 995, 1003, 1030
XceI RCATGY 1 cut(s) 485
XcmI CCANNNNNNNNNTGG 1 cut(s) 770
XmiI GTMKAC 2 cut(s) 579, 698
XmnI GAANNNNTTC 2 cut(s) 427, 444
XspI CTAG 3 cut(s) 435, 753, 792
Zsp2I ATGCAT 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.