AT3G60880

synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0012325
Physical Location & Seq
Forward (+)
22494739 .. 22496697
1959 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G60880.1

Sequence Viewer

Length: 1095 bp
ATGTCAGCTTTGAAAAATTACGGCTTGATCTCCATTGATTCTGCCCTCCATTTTCCTCGATCAAATCAATTGCAGAGCTATAAGAGGAATGCAAAATGGGTCTCTCCAATAGCAGCTGTTGTACCTAACTTCCATCTTCCTATGCGCAGTCTCGAGGATAAAAACAGGACAAACACAGACGACATAAGGTCCCTTAGAGTGATCACAGCCATTAAGACACCGTATTTACCTGATGGAAGATTCGACCTCCAAGCATACGATGACTTAGTCAACACGCAGATAGAAAACGGTGCTGAAGGTGTGATTGTTGGTGGTACAACTGGTGAAGGCCAATTGATGAGCTGGGATGAGCACATAATGCTTATCGGCCATACTGTAAATTGTTTTGGGGGAAGGATCAAAGTCATTGGAAACACTGGAAGTAACTCGACTAGGGAAGCTATTCATGCCACTGAGCAAGGATTCGCCATGGGAATGCACGGGGCACTGCACATTAACCCTTACTATGGAAAAACATCCATTGAAGGCATGAATGCGCATTTTCAAACCGTTCTTCATATGGGACCGACTATTATATACAACGTGCCAGGTCGAACGTGCCAGGATATACCTCCCCAGGTTATCTTTAAACTCTCTCAGAACCCTAATATGGCTGGGGTTAAGGAATGCGTTGGTAATAACCGAGTTGAAGAGTATACTGAGAAGGGAATTGTCGTTTGGAGTGGAAATGATGATCAGTGCCATGATTCTAGATGGGATCACGGTGCCACTGGAGTGATATCGGTTACTAGCAATTTAGTTCCGGGTTTGATGAGGAAGTTGATGTTTGAAGGTAGAAACTCAGCGTTGAACGCAAAGCTTCTTCCTTTAATGGATTGGCTATTCCAAGAACCGAATCCCATTGGTGTAAACACTGCTTTGGCTCAGTTAGGAGTTGCGAGGCCGGTTTTTCGGTTACCTTATGTGCCATTGCCTCTGTCCAAAAGGATTGAGTTCGTTAAACTGGTGAAGGAAATCGGAAGGGAGCATTTTGTAGGAGACAGAGATGTTCAGGTACTTGATGATGATGACTTCATCTTAATCGGTCGATATTAG

Protein Analysis

364

Amino Acids

40.46

Weight (kDa)

6.46

Isoelectric Point (pI)

36.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHDPS PF00701 65 - 338 4.2e-96 Dihydrodipicolinate synthetase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012325)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45440 AT3G60880 AT3G60880
fragaria_vesca FvH4_7g12060
malus_domestica MD02G1201600.v1.1
prunus_persica Prupe.2G147200_v2.0.a1
pyrus_communis pycom02g16500
rosa_chinensis RchiOBHm_Chr1g0350811 RchiOBHm_Chr7g0217051
rosa_laevigata RLG00000028454
rosa_multiflora Rmu_co8411727.1_g000001 Rmu_sc0006200.1_g000005 Rmu_sc0008591.1_g000006
rosa_roxburghii Rroxscaffold_4G00304500
rosa_rugosa Rorug01G0214100
rosa_samantha Rh1BG198700 Rh1CG213500 Rh1DG226600
rosa_wichuraiana Rw1G019790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 146, 537
AccB1I GGYRCC 1 cut(s) 764
AccI GTMKAC 1 cut(s) 695
AclWI GGATC 2 cut(s) 404, 765
AcoI YGGCCR 1 cut(s) 367
AcuI CTGAAG 1 cut(s) 315
AfaI GTAC 3 cut(s) 123, 316, 1056
AfiI CCNNNNNNNGG 2 cut(s) 506, 649
AgsI TTSAA 6 cut(s) 13, 524, 545, 689, 830, 850
AhdI GACNNNNNGTC 1 cut(s) 187
AjnI CCWGG 3 cut(s) 586, 600, 615
AjuI GAANNNNNNNTTGG 2 cut(s) 700, 732
AleI CACNNNNGTG 1 cut(s) 773
AluBI AGCT 6 cut(s) 8, 78, 116, 342, 440, 859
AluI AGCT 6 cut(s) 8, 78, 116, 342, 440, 859
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 3 cut(s) 106, 155, 1032
AlwI GGATC 2 cut(s) 404, 765
Ama87I CYCGRG 1 cut(s) 152
AoxI GGCC 3 cut(s) 328, 367, 941
ApeKI GCWGC 1 cut(s) 113
Asp700I GAANNNNTTC 1 cut(s) 441
AspLEI GCGC 2 cut(s) 147, 538
AspS9I GGNCC 2 cut(s) 189, 563
AsuC2I CCSGG 1 cut(s) 804
AsuHPI GGTGA 2 cut(s) 335, 1018
AvaI CYCGRG 1 cut(s) 152
AvaII GGWCC 2 cut(s) 189, 563
BaeGI GKGCMC 1 cut(s) 487
BanI GGYRCC 1 cut(s) 764
Bbv12I GWGCWC 1 cut(s) 354
BbvI GCAGC 1 cut(s) 125
BccI CCATC 3 cut(s) 141, 227, 747
BceAI ACGGC 1 cut(s) 37
BciT130I CCWGG 3 cut(s) 588, 602, 617
BclI TGATCA 2 cut(s) 201, 733
BcnI CCSGG 1 cut(s) 804
BcoDI GTCTC 3 cut(s) 106, 155, 1032
BfaI CTAG 3 cut(s) 432, 750, 789
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bme1390I CCNGG 4 cut(s) 588, 602, 617, 804
Bme18I GGWCC 2 cut(s) 189, 563
BmeRI GACNNNNNGTC 1 cut(s) 187
BmeT110I CYCGRG 1 cut(s) 152
BmgT120I GGNCC 2 cut(s) 189, 563
BmiI GGNNCC 3 cut(s) 191, 564, 766
BmrFI CCNGG 4 cut(s) 588, 602, 617, 804
BpmI CTGGAG 1 cut(s) 792
BpuMI CCSGG 1 cut(s) 804
BsaI GGTCTC 1 cut(s) 106
BsaJI CCNNGG 2 cut(s) 468, 615
Bsc4I CCNNNNNNNGG 2 cut(s) 506, 649
Bse118I RCCGGY 1 cut(s) 943
Bse1I ACTGG 4 cut(s) 325, 421, 775, 1008
Bse3DI GCAATG 1 cut(s) 968
BseBI CCWGG 3 cut(s) 588, 602, 617
BseDI CCNNGG 2 cut(s) 468, 615
BseGI GGATG 2 cut(s) 352, 515
BseLI CCNNNNNNNGG 2 cut(s) 506, 649
BseMI GCAATG 1 cut(s) 968
BseMII CTCAG 5 cut(s) 444, 650, 690, 855, 938
BseNI ACTGG 4 cut(s) 325, 421, 775, 1008
BseSI GKGCMC 1 cut(s) 487
BseXI GCAGC 1 cut(s) 125
BseYI CCCAGC 2 cut(s) 342, 653
BsgI GTGCAG 1 cut(s) 473
Bsh1285I CGRYCG 1 cut(s) 1087
BshFI GGCC 3 cut(s) 330, 369, 943
BshNI GGYRCC 1 cut(s) 764
BsiEI CGRYCG 1 cut(s) 1087
BsiHKAI GWGCWC 1 cut(s) 354
BsiHKCI CYCGRG 1 cut(s) 152
BsiSI CCGG 2 cut(s) 803, 944
BslFI GGGAC 2 cut(s) 175, 576
BslI CCNNNNNNNGG 2 cut(s) 506, 649
BsmAI GTCTC 3 cut(s) 106, 155, 1032
BsmFI GGGAC 2 cut(s) 175, 576
BsmI GAATGC 4 cut(s) 94, 480, 538, 671
BsnI GGCC 3 cut(s) 330, 369, 943
Bso31I GGTCTC 1 cut(s) 106
BsoBI CYCGRG 1 cut(s) 152
Bsp1286I GDGCHC 2 cut(s) 354, 487
Bsp143I GATC 6 cut(s) 27, 59, 201, 396, 733, 757
Bsp19I CCATGG 1 cut(s) 468
BspANI GGCC 3 cut(s) 330, 369, 943
BspCNI CTCAG 5 cut(s) 445, 649, 691, 854, 937
BspLI GGNNCC 3 cut(s) 191, 564, 766
BspPI GGATC 2 cut(s) 404, 765
BspT107I GGYRCC 1 cut(s) 764
BspTNI GGTCTC 1 cut(s) 106
BsrDI GCAATG 1 cut(s) 968
BsrFI RCCGGY 1 cut(s) 943
BsrI ACTGG 4 cut(s) 325, 421, 775, 1008
BssAI RCCGGY 1 cut(s) 943
BssECI CCNNGG 2 cut(s) 468, 615
BssMI GATC 6 cut(s) 27, 59, 201, 396, 733, 757
BssNAI GTATAC 1 cut(s) 696
BssT1I CCWWGG 1 cut(s) 468
Bst1107I GTATAC 1 cut(s) 696
Bst2UI CCWGG 3 cut(s) 588, 602, 617
Bst4CI ACNGT 5 cut(s) 222, 290, 376, 550, 764
Bst6I CTCTTC 1 cut(s) 684
BstAPI GCANNNNNTGC 1 cut(s) 358
BstDEI CTNAG 7 cut(s) 194, 265, 453, 636, 699, 841, 924
BstDSI CCRYGG 1 cut(s) 468
BstEII GGTNACC 1 cut(s) 954
BstF5I GGATG 2 cut(s) 352, 515
BstHHI GCGC 2 cut(s) 147, 538
BstKTI GATC 6 cut(s) 30, 62, 204, 399, 736, 760
BstMAI GTCTC 3 cut(s) 106, 155, 1032
BstMBI GATC 6 cut(s) 27, 59, 201, 396, 733, 757
BstMCI CGRYCG 1 cut(s) 1087
BstMWI GCNNNNNNNGC 3 cut(s) 358, 446, 851
BstNI CCWGG 3 cut(s) 588, 602, 617
BstPI GGTNACC 1 cut(s) 954
BstSCI CCNGG 4 cut(s) 586, 600, 615, 802
BstSLI GKGCMC 1 cut(s) 487
BstV1I GCAGC 1 cut(s) 125
BstZ17I GTATAC 1 cut(s) 696
BsuRI GGCC 3 cut(s) 330, 369, 943
BtgI CCRYGG 1 cut(s) 468
BtsCI GGATG 2 cut(s) 352, 515
BtsI GCAGTG 2 cut(s) 485, 912
BtsIMutI CAGTG 6 cut(s) 414, 450, 485, 743, 768, 912
CfoI GCGC 2 cut(s) 147, 538
Cfr10I RCCGGY 1 cut(s) 943
Cfr13I GGNCC 2 cut(s) 189, 563
Csp6I GTAC 3 cut(s) 122, 315, 1055
CviAII CATG 4 cut(s) 446, 469, 529, 743
CviQI GTAC 3 cut(s) 122, 315, 1055
DdeI CTNAG 7 cut(s) 194, 265, 453, 636, 699, 841, 924
DpnI GATC 6 cut(s) 29, 61, 203, 398, 735, 759
DpnII GATC 6 cut(s) 27, 59, 201, 396, 733, 757
DraI TTTAAA 1 cut(s) 628
DriI GACNNNNNGTC 1 cut(s) 187
EaeI YGGCCR 1 cut(s) 367
Eam1104I CTCTTC 1 cut(s) 684
Eam1105I GACNNNNNGTC 1 cut(s) 187
EarI CTCTTC 1 cut(s) 684
Eco130I CCWWGG 1 cut(s) 468
Eco31I GGTCTC 1 cut(s) 106
Eco32I GATATC 1 cut(s) 780
Eco47I GGWCC 2 cut(s) 189, 563
Eco57I CTGAAG 1 cut(s) 315
Eco88I CYCGRG 1 cut(s) 152
Eco91I GGTNACC 1 cut(s) 954
EcoO109I RGGNCCY 1 cut(s) 189
EcoO65I GGTNACC 1 cut(s) 954
EcoRII CCWGG 3 cut(s) 586, 600, 615
EcoRV GATATC 1 cut(s) 780
EcoT14I CCWWGG 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 468
FaeI CATG 4 cut(s) 449, 472, 532, 746
FaqI GGGAC 2 cut(s) 175, 576
FatI CATG 4 cut(s) 445, 468, 528, 742
FauNDI CATATG 1 cut(s) 558
FbaI TGATCA 2 cut(s) 201, 733
FblI GTMKAC 1 cut(s) 695
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 2 cut(s) 359, 502
Fsp4HI GCNGC 1 cut(s) 114
FspAI RTGCGCAY 1 cut(s) 537
FspBI CTAG 3 cut(s) 432, 750, 789
FspI TGCGCA 2 cut(s) 146, 537
GlaI GCGC 2 cut(s) 146, 537
GluI GCNGC 1 cut(s) 114
GsaI CCCAGC 2 cut(s) 346, 657
GsuI CTGGAG 1 cut(s) 792
HaeIII GGCC 3 cut(s) 330, 369, 943
HapII CCGG 2 cut(s) 803, 944
HhaI GCGC 2 cut(s) 147, 538
Hin1II CATG 4 cut(s) 449, 472, 532, 746
Hin6I GCGC 2 cut(s) 145, 536
HinP1I GCGC 2 cut(s) 145, 536
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HindIII AAGCTT 1 cut(s) 857
HinfI GANTC 5 cut(s) 38, 240, 462, 746, 895
HpaII CCGG 2 cut(s) 803, 944
HphI GGTGA 2 cut(s) 335, 1018
Hpy166II GTNNAC 3 cut(s) 271, 696, 910
Hpy188I TCNGA 2 cut(s) 639, 1019
Hpy188III TCNNGA 2 cut(s) 152, 750
Hpy8I GTNNAC 3 cut(s) 271, 696, 910
HpyAV CCTTC 8 cut(s) 290, 320, 387, 518, 697, 824, 1003, 1014
HpyCH4III ACNGT 5 cut(s) 222, 290, 376, 550, 764
HpyCH4IV ACGT 2 cut(s) 582, 596
HpyCH4V TGCA 4 cut(s) 73, 92, 478, 490
HpyF10VI GCNNNNNNNGC 3 cut(s) 358, 446, 851
HpyF3I CTNAG 7 cut(s) 194, 265, 453, 636, 699, 841, 924
HpySE526I ACGT 2 cut(s) 582, 596
Hsp92II CATG 4 cut(s) 449, 472, 532, 746
HspAI GCGC 2 cut(s) 145, 536
Ksp22I TGATCA 2 cut(s) 201, 733
Kzo9I GATC 6 cut(s) 27, 59, 201, 396, 733, 757
LmnI GCTCC 1 cut(s) 1024
Lsp1109I GCAGC 1 cut(s) 125
MaeI CTAG 3 cut(s) 432, 750, 789
MaeII ACGT 2 cut(s) 582, 596
MaeIII GTNAC 3 cut(s) 422, 784, 954
MalI GATC 6 cut(s) 29, 61, 203, 398, 735, 759
MboI GATC 6 cut(s) 27, 59, 201, 396, 733, 757
MboII GAAGA 5 cut(s) 128, 249, 545, 701, 854
MfeI CAATTG 2 cut(s) 68, 332
MhlI GDGCHC 2 cut(s) 354, 487
MluCI AATT 6 cut(s) 16, 68, 332, 379, 708, 793
MnlI CCTC 9 cut(s) 56, 66, 78, 148, 257, 621, 807, 933, 984
MroXI GAANNNNTTC 1 cut(s) 441
MseI TTAA 7 cut(s) 213, 495, 627, 660, 869, 999, 1079
MslI CAYNNNNRTG 2 cut(s) 473, 773
MspA1I CMGCKG 1 cut(s) 116
MspI CCGG 2 cut(s) 803, 944
MspR9I CCNGG 4 cut(s) 588, 602, 617, 804
MunI CAATTG 2 cut(s) 68, 332
Mva1269I GAATGC 4 cut(s) 94, 480, 538, 671
MvaI CCWGG 3 cut(s) 588, 602, 617
MwoI GCNNNNNNNGC 3 cut(s) 358, 446, 851
NciI CCSGG 1 cut(s) 804
NcoI CCATGG 1 cut(s) 468
NdeI CATATG 1 cut(s) 558
NdeII GATC 6 cut(s) 27, 59, 201, 396, 733, 757
NlaIII CATG 4 cut(s) 449, 472, 532, 746
NlaIV GGNNCC 3 cut(s) 191, 564, 766
NsbI TGCGCA 2 cut(s) 146, 537
OliI CACNNNNGTG 1 cut(s) 773
PaeR7I CTCGAG 1 cut(s) 152
PctI GAATGC 4 cut(s) 94, 480, 538, 671
PdmI GAANNNNTTC 1 cut(s) 441
PfeI GAWTC 5 cut(s) 38, 240, 462, 746, 895
PflFI GACNNNGTC 1 cut(s) 266
PkrI GCNGC 1 cut(s) 115
PpuMI RGGWCCY 1 cut(s) 189
Psp5II RGGWCCY 1 cut(s) 189
Psp6I CCWGG 3 cut(s) 586, 600, 615
PspEI GGTNACC 1 cut(s) 954
PspFI CCCAGC 2 cut(s) 342, 653
PspGI CCWGG 3 cut(s) 586, 600, 615
PspN4I GGNNCC 3 cut(s) 191, 564, 766
PspPI GGNCC 2 cut(s) 189, 563
PspPPI RGGWCCY 1 cut(s) 189
PsyI GACNNNGTC 1 cut(s) 266
PvuII CAGCTG 1 cut(s) 116
RsaI GTAC 3 cut(s) 123, 316, 1056
RsaNI GTAC 3 cut(s) 122, 315, 1055
RseI CAYNNNNRTG 2 cut(s) 473, 773
SaqAI TTAA 7 cut(s) 213, 495, 627, 660, 869, 999, 1079
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 6 cut(s) 27, 59, 201, 396, 733, 757
Sau96I GGNCC 2 cut(s) 189, 563
ScrFI CCNGG 4 cut(s) 588, 602, 617, 804
SduI GDGCHC 2 cut(s) 354, 487
Sfr274I CTCGAG 1 cut(s) 152
SinI GGWCC 2 cut(s) 189, 563
SlaI CTCGAG 1 cut(s) 152
SmiMI CAYNNNNRTG 2 cut(s) 473, 773
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 6 cut(s) 16, 68, 332, 379, 708, 793
SspMI CTAG 3 cut(s) 432, 750, 789
StyD4I CCNGG 4 cut(s) 586, 600, 615, 802
StyI CCWWGG 1 cut(s) 468
TaaI ACNGT 5 cut(s) 222, 290, 376, 550, 764
TaiI ACGT 2 cut(s) 585, 599
TaqI TCGA 6 cut(s) 58, 153, 243, 428, 592, 1087
TaqII GACCGA 2 cut(s) 580, 1073
TasI AATT 6 cut(s) 16, 68, 332, 379, 708, 793
TfiI GAWTC 5 cut(s) 38, 240, 462, 746, 895
Tru1I TTAA 7 cut(s) 213, 495, 627, 660, 869, 999, 1079
Tru9I TTAA 7 cut(s) 213, 495, 627, 660, 869, 999, 1079
TscAI CASTG 6 cut(s) 421, 457, 492, 743, 775, 919
TseI GCWGC 1 cut(s) 113
TspDTI ATGAA 4 cut(s) 434, 545, 545, 1063
TspRI CASTG 6 cut(s) 421, 457, 492, 743, 775, 919
Tth111I GACNNNGTC 1 cut(s) 266
VpaK11BI GGWCC 2 cut(s) 189, 563
XbaI TCTAGA 1 cut(s) 749
XhoI CTCGAG 1 cut(s) 152
XmiI GTMKAC 1 cut(s) 695
XmnI GAANNNNTTC 1 cut(s) 441
XspI CTAG 3 cut(s) 432, 750, 789
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.