Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0012325

Physical Location & Seq

Genomic Coordinates Forward (+)

10981834 .. 10984367

Gene Structure 2534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g12060.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCGACGTTGCAGAGCTGCAGCAGCAGTGTGTGCCTGAGAGAGTCGTCGTCTCTCTTGCTTCCGCGTCGAAATGTTAACGAAAGCTACAAGAGTAGGACTGTGAAATGGAGGAGTCCACGAGGAGCTGTGGTGCCGAATTTTCATCTTCCAATGCGAAGTTTTGAAATTAAAAACAGGACATCTACAGAGGAGATAAAGTCACTTAGATTGATAACAGCCATCAAAACGCCATATCTCCCAGATGGTAGATTTGATCTTGAAGCATATGATGCGTTGGTTAATACGCAAATTGAACATGGAGCGGAAGGTGTGATTGTTGGTGGCACAACCGGTGAAGGTCAGTTGATGAGTTGGGACGAGCACATAATGCTCATAGGCCACACGATCAACTGTTATGGTGGATCAATTAAGGTAATAGGAAACACTGGCAGCAACTCCACAAGGGAAGCGGTTCATGCTACTGAACAAGGGTTTGCAGTTGGGATGCATGCCGCACTGCACATCAATCCTTATTATGGGAAGACCTCTTTGGAGGGATTAGTTAAGCACTTCGATAGGGTCTTATCTATGGGACCCACTATCATATACAATGTGCCGTCACGAACTGGCCAAGATATCCCCCACCAGGTGATTAACACGTTGGCGCAGAATGCCAACTTGGCGGGTGTCAAGGAGTGTGTTGGAAATGATCGCATTAAACAGCACATTGAGAAGGGAATTGTGGTTTGGAGTGGGAATGATGATGAGTGCCATGATTCAAGGTGGAACCACGGGGCTACCGGAGTCGTATCTGTTACTAGTAATTTGGTTCCCGGTTTGATGCGAGACCTCATGTTTGGGGGGAAGAACCCTTCTCTTAATGCAAAGCTCATGCCTCTGATTCAGTGGCTTTTTCAGGAGCCTAACCCCATCGGCTTAAATACAGCGCTTGCCCAACTTGGTGTTGTGAGACCAGTCTTCAGGCTGCCATATGTACCTCTTCCTCTTGCAAAGAGAGTAGAATTTGTGAACCTGGTTAAGCAAATTGGGCGGGAGCATTTTGTTGGTGAAAAGGATGTTCAAGTTCTTGATGACGATGATTTCACTTATTTGGATCGGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008840 GO:0009507 GO:0009536 GO:0016829 GO:0016835 GO:0016836 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00261 ko00300 ko01100 ko01110 ko01120 ko01130 ko01230 map00261 map00300 map01100 map01110 map01120 map01130 map01230

Pfam Domains

Protein Families

DHDPS

Protein Analysis

369

Amino Acids

40.77

Weight (kDa)

7.22

Isoelectric Point (pI)

42.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHDPS	PF00701	69 - 342	1.2e-93	Dihydrodipicolinate synthetase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45440 AT3G60880 AT3G60880
fragaria_vesca	FvH4_7g12060
malus_domestica	MD02G1201600.v1.1
prunus_persica	Prupe.2G147200_v2.0.a1
pyrus_communis	pycom02g16500
rosa_chinensis	RchiOBHm_Chr1g0350811 RchiOBHm_Chr7g0217051
rosa_laevigata	RLG00000028454
rosa_multiflora	Rmu_co8411727.1_g000001 Rmu_sc0006200.1_g000005 Rmu_sc0008591.1_g000006
rosa_roxburghii	Rroxscaffold_4G00304500
rosa_rugosa	Rorug01G0214100
rosa_samantha	Rh1BG198700 Rh1CG213500 Rh1DG226600
rosa_wichuraiana	Rw1G019790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	133
AccBSI	CCGCTC	1 cut(s)	305
AccII	CGCG	1 cut(s)	67
AciI	CCGC	6 cut(s)	65, 305, 452, 495, 665, 1033
AclWI	GGATC	2 cut(s)	412, 1104
AcoI	YGGCCR	1 cut(s)	610
AcsI	RAATTY	2 cut(s)	139, 1004
AcuI	CTGAAG	1 cut(s)	946
AdeI	CACNNNGTG	1 cut(s)	631
AfaI	GTAC	1 cut(s)	978
AfeI	AGCGCT	1 cut(s)	930
AfiI	CCNNNNNNNGG	2 cut(s)	518, 628
AflIII	ACRYGT	1 cut(s)	639
AgeI	ACCGGT	1 cut(s)	332
AgsI	TTSAA	5 cut(s)	167, 263, 296, 762, 1064
AhlI	ACTAGT	1 cut(s)	800
AjnI	CCWGG	2 cut(s)	627, 1014
AjuI	GAANNNNNNNTTGG	6 cut(s)	515, 547, 644, 676, 712, 744
AluBI	AGCT	4 cut(s)	18, 87, 128, 871
AluI	AGCT	4 cut(s)	18, 87, 128, 871
Alw21I	GWGCWC	1 cut(s)	366
Alw26I	GTCTC	3 cut(s)	57, 822, 946
AlwI	GGATC	2 cut(s)	412, 1104
Aor51HI	AGCGCT	1 cut(s)	930
AoxI	GGCC	2 cut(s)	379, 610
ApeKI	GCWGC	5 cut(s)	18, 21, 24, 432, 967
ApoI	RAATTY	2 cut(s)	139, 1004
ArsI	GACNNNNNNTTYG	2 cut(s)	821, 853
AsiGI	ACCGGT	1 cut(s)	332
Asp700I	GAANNNNTTC	1 cut(s)	453
AspLEI	GCGC	2 cut(s)	649, 931
AspS9I	GGNCC	1 cut(s)	575
AsuC2I	CCSGG	1 cut(s)	816
AsuHPI	GGTGA	3 cut(s)	347, 643, 1061
AvaII	GGWCC	1 cut(s)	575
BalI	TGGCCA	1 cut(s)	612
BanI	GGYRCC	1 cut(s)	133
BauI	CACGAG	1 cut(s)	120
BbsI	GAAGAC	2 cut(s)	530, 952
Bbv12I	GWGCWC	1 cut(s)	366
BbvI	GCAGC	5 cut(s)	5, 33, 36, 444, 954
BccI	CCATC	3 cut(s)	230, 239, 920
BceAI	ACGGC	1 cut(s)	583
BciT130I	CCWGG	2 cut(s)	629, 1016
BcnI	CCSGG	1 cut(s)	816
BcoDI	GTCTC	3 cut(s)	57, 822, 946
BcuI	ACTAGT	1 cut(s)	800
BfaI	CTAG	1 cut(s)	801
BfmI	CTRYAG	2 cut(s)	19, 186
BfoI	RGCGCY	1 cut(s)	932
BglI	GCCNNNNNGGC	1 cut(s)	662
BisI	GCNGC	6 cut(s)	19, 22, 25, 433, 495, 968
BlsI	GCNGC	6 cut(s)	20, 23, 26, 434, 496, 969
Bme1390I	CCNGG	3 cut(s)	629, 816, 1016
Bme18I	GGWCC	1 cut(s)	575
BmgT120I	GGNCC	1 cut(s)	575
BmiI	GGNNCC	6 cut(s)	135, 576, 577, 770, 813, 903
BmrFI	CCNGG	3 cut(s)	629, 816, 1016
BmsI	GCATC	3 cut(s)	262, 477, 813
BpiI	GAAGAC	2 cut(s)	530, 952
BpuMI	CCSGG	1 cut(s)	816
BsaI	GGTCTC	2 cut(s)	822, 946
BsaJI	CCNNGG	1 cut(s)	772
BsaWI	WCCGGW	2 cut(s)	332, 782
BsaXI	ACNNNNNCTCC	4 cut(s)	117, 147, 185, 215
Bsc4I	CCNNNNNNNGG	2 cut(s)	518, 628
Bse118I	RCCGGY	1 cut(s)	332
Bse1I	ACTGG	3 cut(s)	433, 613, 956
BseBI	CCWGG	2 cut(s)	629, 1016
BseDI	CCNNGG	1 cut(s)	772
BseGI	GGATG	2 cut(s)	492, 1063
BseLI	CCNNNNNNNGG	2 cut(s)	518, 628
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	3 cut(s)	433, 613, 956
BseRI	GAGGAG	3 cut(s)	127, 138, 206
BseXI	GCAGC	5 cut(s)	5, 33, 36, 444, 954
BsgI	GTGCAG	1 cut(s)	485
Bsh1236I	CGCG	1 cut(s)	67
BshFI	GGCC	2 cut(s)	381, 612
BshNI	GGYRCC	1 cut(s)	133
BshTI	ACCGGT	1 cut(s)	332
BsiHKAI	GWGCWC	1 cut(s)	366
BsiSI	CCGG	3 cut(s)	333, 783, 816
BslFI	GGGAC	2 cut(s)	371, 588
BslI	CCNNNNNNNGG	2 cut(s)	518, 628
BsmAI	GTCTC	3 cut(s)	57, 822, 946
BsmBI	CGTCTC	1 cut(s)	57
BsmFI	GGGAC	2 cut(s)	371, 588
BsmI	GAATGC	1 cut(s)	658
BsnI	GGCC	2 cut(s)	381, 612
Bso31I	GGTCTC	2 cut(s)	822, 946
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	5 cut(s)	256, 387, 404, 691, 1096
BspACI	CCGC	6 cut(s)	65, 305, 452, 495, 665, 1033
BspANI	GGCC	2 cut(s)	381, 612
BspCNI	CTCAG	1 cut(s)	30
BspFNI	CGCG	1 cut(s)	67
BspLI	GGNNCC	6 cut(s)	135, 576, 577, 770, 813, 903
BspMAI	CTGCAG	1 cut(s)	23
BspPI	GGATC	2 cut(s)	412, 1104
BspT107I	GGYRCC	1 cut(s)	133
BspTNI	GGTCTC	2 cut(s)	822, 946
BsrBI	CCGCTC	1 cut(s)	305
BsrFI	RCCGGY	1 cut(s)	332
BsrI	ACTGG	3 cut(s)	433, 613, 956
BssAI	RCCGGY	1 cut(s)	332
BssECI	CCNNGG	1 cut(s)	772
BssMI	GATC	5 cut(s)	256, 387, 404, 691, 1096
BssSI	CACGAG	1 cut(s)	120
Bst2BI	CACGAG	1 cut(s)	120
Bst2UI	CCWGG	2 cut(s)	629, 1016
Bst4CI	ACNGT	2 cut(s)	103, 395
Bst6I	CTCTTC	1 cut(s)	987
BstAPI	GCANNNNNTGC	3 cut(s)	33, 272, 370
BstC8I	GCNNGC	2 cut(s)	492, 933
BstDEI	CTNAG	2 cut(s)	38, 206
BstDSI	CCRYGG	1 cut(s)	772
BstF5I	GGATG	2 cut(s)	492, 1063
BstFNI	CGCG	1 cut(s)	67
BstH2I	RGCGCY	1 cut(s)	932
BstHHI	GCGC	2 cut(s)	649, 931
BstKTI	GATC	5 cut(s)	259, 390, 407, 694, 1099
BstMAI	GTCTC	3 cut(s)	57, 822, 946
BstMBI	GATC	5 cut(s)	256, 387, 404, 691, 1096
BstMWI	GCNNNNNNNGC	8 cut(s)	24, 33, 272, 370, 458, 653, 662, 1030
BstNI	CCWGG	2 cut(s)	629, 1016
BstNSI	RCATGY	1 cut(s)	494
BstSCI	CCNGG	3 cut(s)	627, 814, 1014
BstSFI	CTRYAG	2 cut(s)	19, 186
BstUI	CGCG	1 cut(s)	67
BstV1I	GCAGC	5 cut(s)	5, 33, 36, 444, 954
BstV2I	GAAGAC	2 cut(s)	530, 952
BsuRI	GGCC	2 cut(s)	381, 612
BtgI	CCRYGG	1 cut(s)	772
BtsCI	GGATG	2 cut(s)	492, 1063
BtsI	GCAGTG	2 cut(s)	34, 497
BtsIMutI	CAGTG	4 cut(s)	34, 426, 497, 893
Cac8I	GCNNGC	2 cut(s)	492, 933
CfoI	GCGC	2 cut(s)	649, 931
Cfr10I	RCCGGY	1 cut(s)	332
Cfr13I	GGNCC	1 cut(s)	575
CseI	GACGC	1 cut(s)	56
CsiI	ACCWGGT	2 cut(s)	627, 1014
Csp6I	GTAC	1 cut(s)	977
CspAI	ACCGGT	1 cut(s)	332
CviAII	CATG	6 cut(s)	299, 458, 491, 755, 835, 874
CviQI	GTAC	1 cut(s)	977
DdeI	CTNAG	2 cut(s)	38, 206
DpnI	GATC	5 cut(s)	258, 389, 406, 693, 1098
DpnII	GATC	5 cut(s)	256, 387, 404, 691, 1096
DraIII	CACNNNGTG	1 cut(s)	631
EaeI	YGGCCR	1 cut(s)	610
Eam1104I	CTCTTC	1 cut(s)	987
EarI	CTCTTC	1 cut(s)	987
Eco31I	GGTCTC	2 cut(s)	822, 946
Eco32I	GATATC	1 cut(s)	619
Eco47I	GGWCC	1 cut(s)	575
Eco47III	AGCGCT	1 cut(s)	930
Eco57I	CTGAAG	1 cut(s)	946
EcoO109I	RGGNCCY	1 cut(s)	575
EcoRII	CCWGG	2 cut(s)	627, 1014
EcoRV	GATATC	1 cut(s)	619
EcoT22I	ATGCAT	1 cut(s)	492
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	6 cut(s)	302, 461, 494, 758, 838, 877
FaqI	GGGAC	2 cut(s)	371, 588
FatI	CATG	6 cut(s)	298, 457, 490, 754, 834, 873
FauI	CCCGC	2 cut(s)	658, 1026
FauNDI	CATATG	2 cut(s)	268, 973
Fnu4HI	GCNGC	6 cut(s)	19, 22, 25, 433, 495, 968
FokI	GGATG	2 cut(s)	499, 1070
Fsp4HI	GCNGC	6 cut(s)	19, 22, 25, 433, 495, 968
FspBI	CTAG	1 cut(s)	801
GlaI	GCGC	2 cut(s)	648, 930
GluI	GCNGC	6 cut(s)	19, 22, 25, 433, 495, 968
HaeII	RGCGCY	1 cut(s)	932
HaeIII	GGCC	2 cut(s)	381, 612
HapII	CCGG	3 cut(s)	333, 783, 816
HgaI	GACGC	1 cut(s)	56
HhaI	GCGC	2 cut(s)	649, 931
Hin1II	CATG	6 cut(s)	302, 461, 494, 758, 838, 877
Hin6I	GCGC	2 cut(s)	647, 929
HinP1I	GCGC	2 cut(s)	647, 929
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	5 cut(s)	44, 115, 758, 786, 883
HpaI	GTTAAC	1 cut(s)	79
HpaII	CCGG	3 cut(s)	333, 783, 816
HphI	GGTGA	3 cut(s)	347, 643, 1061
Hpy166II	GTNNAC	3 cut(s)	79, 119, 1012
Hpy188I	TCNGA	1 cut(s)	882
Hpy188III	TCNNGA	4 cut(s)	260, 603, 899, 1070
Hpy8I	GTNNAC	3 cut(s)	79, 119, 1012
Hpy99I	CGWCG	3 cut(s)	10, 52, 72
HpyAV	CCTTC	4 cut(s)	302, 332, 709, 864
HpyCH4III	ACNGT	2 cut(s)	103, 395
HpyCH4IV	ACGT	2 cut(s)	8, 641
HpyCH4V	TGCA	7 cut(s)	13, 21, 479, 490, 502, 866, 992
HpyF10VI	GCNNNNNNNGC	8 cut(s)	24, 33, 272, 370, 458, 653, 662, 1030
HpyF3I	CTNAG	2 cut(s)	38, 206
HpySE526I	ACGT	2 cut(s)	8, 641
Hsp92II	CATG	6 cut(s)	302, 461, 494, 758, 838, 877
HspAI	GCGC	2 cut(s)	647, 929
KflI	GGGWCCC	1 cut(s)	575
KspAI	GTTAAC	1 cut(s)	79
Kzo9I	GATC	5 cut(s)	256, 387, 404, 691, 1096
LmnI	GCTCC	4 cut(s)	125, 302, 901, 1036
Lsp1109I	GCAGC	5 cut(s)	5, 33, 36, 444, 954
LweI	GCATC	3 cut(s)	262, 477, 813
MabI	ACCWGGT	2 cut(s)	627, 1014
MaeI	CTAG	1 cut(s)	801
MaeII	ACGT	2 cut(s)	8, 641
MaeIII	GTNAC	3 cut(s)	201, 600, 796
MalI	GATC	5 cut(s)	258, 389, 406, 693, 1098
MbiI	CCGCTC	1 cut(s)	305
MboI	GATC	5 cut(s)	256, 387, 404, 691, 1096
MboII	GAAGA	5 cut(s)	140, 535, 859, 952, 974
MhlI	GDGCHC	1 cut(s)	366
MlsI	TGGCCA	1 cut(s)	612
MluCI	AATT	8 cut(s)	139, 168, 291, 408, 720, 805, 1004, 1026
MluNI	TGGCCA	1 cut(s)	612
MlyI	GAGTC	3 cut(s)	53, 124, 795
MmeI	TCCRAC	1 cut(s)	664
MnlI	CCTC	9 cut(s)	105, 116, 184, 529, 538, 842, 888, 990, 996
Mox20I	TGGCCA	1 cut(s)	612
Mph1103I	ATGCAT	1 cut(s)	492
MroXI	GAANNNNTTC	1 cut(s)	453
MscI	TGGCCA	1 cut(s)	612
Msp20I	TGGCCA	1 cut(s)	612
MspI	CCGG	3 cut(s)	333, 783, 816
MspR9I	CCNGG	3 cut(s)	629, 816, 1016
Mva1269I	GAATGC	1 cut(s)	658
MvaI	CCWGG	2 cut(s)	629, 1016
MvnI	CGCG	1 cut(s)	67
MwoI	GCNNNNNNNGC	8 cut(s)	24, 33, 272, 370, 458, 653, 662, 1030
NciI	CCSGG	1 cut(s)	816
NdeI	CATATG	2 cut(s)	268, 973
NdeII	GATC	5 cut(s)	256, 387, 404, 691, 1096
NlaIII	CATG	6 cut(s)	302, 461, 494, 758, 838, 877
NlaIV	GGNNCC	6 cut(s)	135, 576, 577, 770, 813, 903
NmuCI	GTSAC	2 cut(s)	201, 600
NsiI	ATGCAT	1 cut(s)	492
NspI	RCATGY	1 cut(s)	494
PaeI	GCATGC	1 cut(s)	494
PctI	GAATGC	1 cut(s)	658
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	2 cut(s)	758, 883
PinAI	ACCGGT	1 cut(s)	332
PkrI	GCNGC	6 cut(s)	20, 23, 26, 434, 496, 969
PleI	GAGTC	3 cut(s)	52, 123, 794
PpsI	GAGTC	3 cut(s)	52, 123, 794
PpuMI	RGGWCCY	1 cut(s)	575
Psp5II	RGGWCCY	1 cut(s)	575
Psp6I	CCWGG	2 cut(s)	627, 1014
PspGI	CCWGG	2 cut(s)	627, 1014
PspN4I	GGNNCC	6 cut(s)	135, 576, 577, 770, 813, 903
PspPI	GGNCC	1 cut(s)	575
PspPPI	RGGWCCY	1 cut(s)	575
PstI	CTGCAG	1 cut(s)	23
RsaI	GTAC	1 cut(s)	978
RsaNI	GTAC	1 cut(s)	977
SatI	GCNGC	6 cut(s)	19, 22, 25, 433, 495, 968
Sau3AI	GATC	5 cut(s)	256, 387, 404, 691, 1096
Sau96I	GGNCC	1 cut(s)	575
SchI	GAGTC	3 cut(s)	53, 124, 795
ScrFI	CCNGG	3 cut(s)	629, 816, 1016
SduI	GDGCHC	1 cut(s)	366
SexAI	ACCWGGT	2 cut(s)	627, 1014
SfaNI	GCATC	3 cut(s)	262, 477, 813
SfcI	CTRYAG	2 cut(s)	19, 186
SinI	GGWCC	1 cut(s)	575
SpeI	ACTAGT	1 cut(s)	800
SphI	GCATGC	1 cut(s)	494
Sse9I	AATT	8 cut(s)	139, 168, 291, 408, 720, 805, 1004, 1026
SsiI	CCGC	6 cut(s)	65, 305, 452, 495, 665, 1033
SspMI	CTAG	1 cut(s)	801
StyD4I	CCNGG	3 cut(s)	627, 814, 1014
TaaI	ACNGT	2 cut(s)	103, 395
TaiI	ACGT	2 cut(s)	11, 644
TaqI	TCGA	2 cut(s)	70, 555
TasI	AATT	8 cut(s)	139, 168, 291, 408, 720, 805, 1004, 1026
TauI	GCSGC	1 cut(s)	497
TfiI	GAWTC	2 cut(s)	758, 883
TscAI	CASTG	4 cut(s)	34, 433, 504, 893
TseFI	GTSAC	2 cut(s)	201, 600
TseI	GCWGC	5 cut(s)	18, 21, 24, 432, 967
Tsp45I	GTSAC	2 cut(s)	201, 600
TspDTI	ATGAA	2 cut(s)	134, 446
TspRI	CASTG	4 cut(s)	34, 433, 504, 893
VpaK11BI	GGWCC	1 cut(s)	575
XapI	RAATTY	2 cut(s)	139, 1004
XceI	RCATGY	1 cut(s)	494
XmnI	GAANNNNTTC	1 cut(s)	453
XspI	CTAG	1 cut(s)	801
Zsp2I	ATGCAT	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.