Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015480

Physical Location & Seq

Genomic Coordinates Reverse (-)

18836264 .. 18839273

Gene Structure 3010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G45730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGGAACTCAATAAGGATCAGACAGTCATGTCGGAGGATAAAAAGCCTCAAGATCCAAATCCCAGATTTGCTTGCGAAGGTTGCAGCGTTCTGCTCGACATCAACGATGGTGACCGTCTCGTCTTCGCTCGTTTATCTAGTGGCGCTATATTAAAAATTGGGAATAAGAATTATTCTTTAAAGCCATTGATCGGAGCTCCGTTTGGATCTCTGTTCCAAGTCGAAACCGGAGAAGATGGTTCTTTCCTCTCTCGCATTCTTCCCATTAAACAAGAAAGTAACAGTAATAATGTTATGGACGATTCGAGAGATAATCGAGAAATCGTCGACAATAATGAAGCTCAGAATCTTACTGGTGAAGAAATTGAAGCTATGCGGAGAGAGGGTGCAAAAGGGGATGAAATTATTGAAGCTCTAATTGCAAACAGCAAAACTTTTGATAAGAAGTTTCAGTTGTCTCAGGAAAAATATAAGCTTAAAAAGCAGAAGAAATATGCACCAAAGCTGCTTCTTCGACGGCCTTTTGCTCGAAGTATATGTGAAGCTTATTTCAAGAAATACCCAGCCAGAATTGGATTCTTACGAGTAGATGCGTTATCTCTTCTGTTAACGATGGCTAATGTCACTGCATACTCGGATGTGCTTGTGGTGGATATGGTTGGTGGCCTTGTCACTGGTGCAGTGGCTGAAAGATTAGGAGGCACTGGTTATGTTTGCAATACATATAAGGGAAGTTCTCCTTATCCTGTGGAGATGGTAAGGATGTTCAACTTTAGTGACAAGGTTTTAAAGAGGATCGTGCAGTCATCGATAAACGAGCTCTCGTCAGCCAAAACTGCGTCTACTGAAGGAAACAATCAACAAGAAGGAGTTTGCAAAGCTGAGAACAATATTAATGAAACAGCTACATCTGATGTTATGGTTGAAGAAATATCTGTGACAACTGAGGCTGGAGTAGTAGATATTGTTGTACCAGAGAGCAAAATTATCAAAGCCGCAAAAGCTGGAGCCAAAGCTTCAAAAGAAACAATAGAGATGTGGCAAGAAAACGGTTTTTCGAGTCTAATCATGGCTGCGCAAGACCAAGACCCATGGATCGTAGCTAAGGATGTATTGCCACTACTGTCCTACTCTGCTCCTTTTGCAATATATCATCAGTATTTACAGCCGCTGGCGACATGTATGCACAAGCTTCAACAGGGTAAAATGGCGATCAATCTGCAAATAACAGAACCATGGCTACGCGAATATCAGGTGCTTCCTTCAAGATCTCACCCTCACATGCAGATGAGTTCTTTTGGAGGCTATGTTCTGAGTGGCATCAGAATCTCTACCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001510 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0030488 GO:0031515 GO:0032259 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0034708 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043414 GO:0043527 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:1901360 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gcd10p

Protein Analysis

446

Amino Acids

49.41

Weight (kDa)

6.22

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gcd10p	PF04189	28 - 289	1.1e-59	Gcd10p family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015480)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45730
fragaria_vesca	FvH4_2g38570
malus_domestica	MD08G1013700.v1.1 MD15G1013300.v1.1
prunus_persica	Prupe.1G366700_v2.0.a1
pyrus_communis	pycom08g01240
rosa_chinensis	RchiOBHm_Chr6g0302731
rosa_laevigata	RLG00000011143
rosa_multiflora	Rmu_sc0009897.1_g000006
rosa_roxburghii	Rroxscaffold_7G00165370
rosa_rugosa	Rorug06G0316600
rosa_samantha	Rh6AG429900 Rh6BG472600 Rh6CG442400 Rh6DG429100
rosa_wichuraiana	Rw6G037230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	28, 119
Acc16I	TGCGCA	1 cut(s)	1077
AccI	GTMKAC	2 cut(s)	327, 842
AccII	CGCG	1 cut(s)	1245
AciI	CCGC	3 cut(s)	376, 996, 1169
AclWI	GGATC	5 cut(s)	24, 47, 214, 803, 1103
AcuI	CTGAAG	1 cut(s)	867
AfaI	GTAC	1 cut(s)	972
AfiI	CCNNNNNNNGG	1 cut(s)	191
AflIII	ACRYGT	1 cut(s)	1178
AgsI	TTSAA	8 cut(s)	368, 410, 553, 769, 926, 1020, 1196, 1266
AloI	GAACNNNNNNTCC	2 cut(s)	1293, 1325
Alw21I	GWGCWC	2 cut(s)	199, 822
Alw26I	GTCTC	2 cut(s)	122, 462
AlwI	GGATC	5 cut(s)	24, 47, 214, 803, 1103
AlwNI	CAGNNNCTG	2 cut(s)	686, 1171
AoxI	GGCC	2 cut(s)	518, 664
ApeKI	GCWGC	3 cut(s)	84, 505, 1073
AseI	ATTAAT	1 cut(s)	894
AspLEI	GCGC	2 cut(s)	146, 1078
AsuHPI	GGTGA	3 cut(s)	122, 368, 1265
BanII	GRGCYC	2 cut(s)	199, 822
BbsI	GAAGAC	1 cut(s)	115
Bbv12I	GWGCWC	2 cut(s)	199, 822
BbvI	GCAGC	3 cut(s)	96, 492, 1060
BccI	CCATC	4 cut(s)	101, 230, 607, 748
BceAI	ACGGC	1 cut(s)	533
BcgI	CGANNNNNNTGC	4 cut(s)	1165, 1199, 1201, 1235
BcoDI	GTCTC	2 cut(s)	122, 462
BfaI	CTAG	1 cut(s)	138
BfoI	RGCGCY	1 cut(s)	147
BglII	AGATCT	1 cut(s)	1268
BisI	GCNGC	5 cut(s)	85, 506, 996, 1074, 1169
BlsI	GCNGC	5 cut(s)	86, 507, 997, 1075, 1170
BmiI	GGNNCC	1 cut(s)	1009
BmsI	GCATC	2 cut(s)	580, 1329
BpiI	GAAGAC	1 cut(s)	115
BpmI	CTGGAG	2 cut(s)	972, 1026
Bpu10I	CCTNAGC	1 cut(s)	1104
BpuEI	CTTGAG	1 cut(s)	33
Bsa29I	ATCGAT	1 cut(s)	809
BsaBI	GATNNNNATC	1 cut(s)	57
BsaJI	CCNNGG	2 cut(s)	1091, 1235
BsaWI	WCCGGW	1 cut(s)	227
BsaXI	ACNNNNNCTCC	4 cut(s)	370, 400, 1293, 1323
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse1I	ACTGG	3 cut(s)	358, 679, 709
Bse8I	GATNNNNATC	1 cut(s)	57
BseCI	ATCGAT	1 cut(s)	809
BseDI	CCNNGG	2 cut(s)	1091, 1235
BseGI	GGATG	4 cut(s)	403, 643, 768, 1114
BseJI	GATNNNNATC	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMII	CTCAG	5 cut(s)	356, 473, 873, 936, 1304
BseNI	ACTGG	3 cut(s)	358, 679, 709
BseXI	GCAGC	3 cut(s)	96, 492, 1060
BseYI	CCCAGC	1 cut(s)	562
BsgI	GTGCAG	2 cut(s)	699, 821
Bsh1236I	CGCG	1 cut(s)	1245
BshFI	GGCC	2 cut(s)	520, 666
BshVI	ATCGAT	1 cut(s)	809
BsiHKAI	GWGCWC	2 cut(s)	199, 822
BsiSI	CCGG	1 cut(s)	228
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmAI	GTCTC	2 cut(s)	122, 462
BsmBI	CGTCTC	1 cut(s)	122
BsmI	GAATGC	1 cut(s)	255
BsnI	GGCC	2 cut(s)	520, 666
Bsp1286I	GDGCHC	2 cut(s)	199, 822
Bsp143I	GATC	8 cut(s)	16, 52, 189, 206, 795, 1095, 1212, 1268
Bsp19I	CCATGG	2 cut(s)	1091, 1235
BspACI	CCGC	3 cut(s)	376, 996, 1169
BspANI	GGCC	2 cut(s)	520, 666
BspCNI	CTCAG	5 cut(s)	355, 472, 874, 937, 1305
BspDI	ATCGAT	1 cut(s)	809
BspFNI	CGCG	1 cut(s)	1245
BspLI	GGNNCC	1 cut(s)	1009
BspPI	GGATC	5 cut(s)	24, 47, 214, 803, 1103
BsrI	ACTGG	3 cut(s)	358, 679, 709
BssECI	CCNNGG	2 cut(s)	1091, 1235
BssMI	GATC	8 cut(s)	16, 52, 189, 206, 795, 1095, 1212, 1268
BssT1I	CCWWGG	2 cut(s)	1091, 1235
Bst4CI	ACNGT	5 cut(s)	25, 116, 284, 1052, 1125
Bst6I	CTCTTC	1 cut(s)	606
BstC8I	GCNNGC	2 cut(s)	73, 1173
BstDEI	CTNAG	6 cut(s)	342, 459, 882, 945, 1104, 1313
BstDSI	CCRYGG	2 cut(s)	1091, 1235
BstEII	GGTNACC	1 cut(s)	110
BstF5I	GGATG	4 cut(s)	403, 643, 768, 1114
BstFNI	CGCG	1 cut(s)	1245
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	2 cut(s)	146, 1078
BstKTI	GATC	8 cut(s)	19, 55, 192, 209, 798, 1098, 1215, 1271
BstMAI	GTCTC	2 cut(s)	122, 462
BstMBI	GATC	8 cut(s)	16, 52, 189, 206, 795, 1095, 1212, 1268
BstMWI	GCNNNNNNNGC	6 cut(s)	81, 419, 481, 836, 1001, 1142
BstNSI	RCATGY	2 cut(s)	1182, 1285
BstPI	GGTNACC	1 cut(s)	110
BstUI	CGCG	1 cut(s)	1245
BstV1I	GCAGC	3 cut(s)	96, 492, 1060
BstV2I	GAAGAC	1 cut(s)	115
BstX2I	RGATCY	3 cut(s)	52, 206, 1268
BstYI	RGATCY	3 cut(s)	52, 206, 1268
Bsu15I	ATCGAT	1 cut(s)	809
BsuRI	GGCC	2 cut(s)	520, 666
BsuTUI	ATCGAT	1 cut(s)	809
BtgI	CCRYGG	2 cut(s)	1091, 1235
BtsCI	GGATG	4 cut(s)	403, 643, 768, 1114
BtsI	GCAGTG	2 cut(s)	624, 687
BtsIMutI	CAGTG	4 cut(s)	624, 672, 687, 702
Cac8I	GCNNGC	2 cut(s)	73, 1173
CaiI	CAGNNNCTG	2 cut(s)	686, 1171
CfoI	GCGC	2 cut(s)	146, 1078
ClaI	ATCGAT	1 cut(s)	809
CseI	GACGC	1 cut(s)	828
Csp6I	GTAC	1 cut(s)	971
CviAII	CATG	6 cut(s)	28, 1069, 1092, 1179, 1236, 1282
CviQI	GTAC	1 cut(s)	971
DdeI	CTNAG	6 cut(s)	342, 459, 882, 945, 1104, 1313
DpnI	GATC	8 cut(s)	18, 54, 191, 208, 797, 1097, 1214, 1270
DpnII	GATC	8 cut(s)	16, 52, 189, 206, 795, 1095, 1212, 1268
DraI	TTTAAA	2 cut(s)	180, 789
DrdI	GACNNNNNNGTC	2 cut(s)	28, 119
DseDI	GACNNNNNNGTC	2 cut(s)	28, 119
Eam1104I	CTCTTC	1 cut(s)	606
EarI	CTCTTC	1 cut(s)	606
Ecl136II	GAGCTC	2 cut(s)	197, 820
Eco130I	CCWWGG	2 cut(s)	1091, 1235
Eco24I	GRGCYC	2 cut(s)	199, 822
Eco53kI	GAGCTC	2 cut(s)	197, 820
Eco57I	CTGAAG	1 cut(s)	867
Eco91I	GGTNACC	1 cut(s)	110
EcoICRI	GAGCTC	2 cut(s)	197, 820
EcoO65I	GGTNACC	1 cut(s)	110
EcoT14I	CCWWGG	2 cut(s)	1091, 1235
EcoT38I	GRGCYC	2 cut(s)	199, 822
ErhI	CCWWGG	2 cut(s)	1091, 1235
Esp3I	CGTCTC	1 cut(s)	122
FaeI	CATG	6 cut(s)	31, 1072, 1095, 1182, 1239, 1285
FalI	AAGNNNNNCTT	2 cut(s)	724, 756
FatI	CATG	6 cut(s)	27, 1068, 1091, 1178, 1235, 1281
FblI	GTMKAC	2 cut(s)	327, 842
Fnu4HI	GCNGC	5 cut(s)	85, 506, 996, 1074, 1169
FokI	GGATG	4 cut(s)	410, 650, 775, 1121
FriOI	GRGCYC	2 cut(s)	199, 822
Fsp4HI	GCNGC	5 cut(s)	85, 506, 996, 1074, 1169
FspBI	CTAG	1 cut(s)	138
FspI	TGCGCA	1 cut(s)	1077
GlaI	GCGC	2 cut(s)	145, 1077
GluI	GCNGC	5 cut(s)	85, 506, 996, 1074, 1169
GsaI	CCCAGC	1 cut(s)	566
GsuI	CTGGAG	2 cut(s)	972, 1026
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	2 cut(s)	520, 666
HapII	CCGG	1 cut(s)	228
HgaI	GACGC	1 cut(s)	828
HhaI	GCGC	2 cut(s)	146, 1078
Hin1II	CATG	6 cut(s)	31, 1072, 1095, 1182, 1239, 1285
Hin6I	GCGC	2 cut(s)	144, 1076
HinP1I	GCGC	2 cut(s)	144, 1076
HincII	GTYRAC	2 cut(s)	328, 609
HindII	GTYRAC	2 cut(s)	328, 609
HindIII	AAGCTT	4 cut(s)	473, 543, 1014, 1190
HinfI	GANTC	5 cut(s)	302, 346, 576, 1060, 1326
HpaI	GTTAAC	1 cut(s)	609
HpaII	CCGG	1 cut(s)	228
HphI	GGTGA	3 cut(s)	122, 368, 1265
Hpy166II	GTNNAC	3 cut(s)	328, 609, 843
Hpy188I	TCNGA	8 cut(s)	21, 34, 194, 345, 637, 913, 1314, 1325
Hpy188III	TCNNGA	6 cut(s)	50, 306, 317, 461, 553, 1266
Hpy8I	GTNNAC	3 cut(s)	328, 609, 843
Hpy99I	CGWCG	2 cut(s)	329, 519
HpyAV	CCTTC	4 cut(s)	71, 842, 860, 1272
HpyCH4III	ACNGT	5 cut(s)	25, 116, 284, 1052, 1125
HpyF10VI	GCNNNNNNNGC	6 cut(s)	81, 419, 481, 836, 1001, 1142
HpyF3I	CTNAG	6 cut(s)	342, 459, 882, 945, 1104, 1313
Hsp92II	CATG	6 cut(s)	31, 1072, 1095, 1182, 1239, 1285
HspAI	GCGC	2 cut(s)	144, 1076
KspAI	GTTAAC	1 cut(s)	609
Kzo9I	GATC	8 cut(s)	16, 52, 189, 206, 795, 1095, 1212, 1268
LmnI	GCTCC	4 cut(s)	194, 202, 1007, 1141
Lsp1109I	GCAGC	3 cut(s)	96, 492, 1060
LweI	GCATC	2 cut(s)	580, 1329
MaeI	CTAG	1 cut(s)	138
MaeIII	GTNAC	6 cut(s)	110, 278, 622, 670, 776, 937
MalI	GATC	8 cut(s)	18, 54, 191, 208, 797, 1097, 1214, 1270
MboI	GATC	8 cut(s)	16, 52, 189, 206, 795, 1095, 1212, 1268
MboII	GAAGA	8 cut(s)	115, 245, 251, 371, 499, 503, 593, 938
MflI	RGATCY	3 cut(s)	52, 206, 1268
MhlI	GDGCHC	2 cut(s)	199, 822
MluCI	AATT	7 cut(s)	156, 169, 363, 402, 417, 570, 984
MlyI	GAGTC	1 cut(s)	1069
MmeI	TCCRAC	1 cut(s)	12
MnlI	CCTC	9 cut(s)	28, 57, 257, 376, 692, 786, 940, 1287, 1295
MseI	TTAA	7 cut(s)	152, 179, 267, 477, 608, 788, 894
MslI	CAYNNNNRTG	1 cut(s)	1286
MspA1I	CMGCKG	1 cut(s)	1171
MspI	CCGG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	255
MvnI	CGCG	1 cut(s)	1245
MwoI	GCNNNNNNNGC	6 cut(s)	81, 419, 481, 836, 1001, 1142
NcoI	CCATGG	2 cut(s)	1091, 1235
NdeII	GATC	8 cut(s)	16, 52, 189, 206, 795, 1095, 1212, 1268
NlaIII	CATG	6 cut(s)	31, 1072, 1095, 1182, 1239, 1285
NlaIV	GGNNCC	1 cut(s)	1009
NmuCI	GTSAC	5 cut(s)	110, 622, 670, 776, 937
NsbI	TGCGCA	1 cut(s)	1077
NspI	RCATGY	2 cut(s)	1182, 1285
PciI	ACATGT	1 cut(s)	1178
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PctI	GAATGC	1 cut(s)	255
PfeI	GAWTC	4 cut(s)	302, 346, 576, 1326
PkrI	GCNGC	5 cut(s)	86, 507, 997, 1075, 1170
PleI	GAGTC	1 cut(s)	1068
PpsI	GAGTC	1 cut(s)	1068
PscI	ACATGT	1 cut(s)	1178
PshBI	ATTAAT	1 cut(s)	894
Psp124BI	GAGCTC	2 cut(s)	199, 822
PspEI	GGTNACC	1 cut(s)	110
PspFI	CCCAGC	1 cut(s)	562
PspN4I	GGNNCC	1 cut(s)	1009
PsrI	GAACNNNNNNTAC	2 cut(s)	1224, 1256
PstNI	CAGNNNCTG	2 cut(s)	686, 1171
PsuI	RGATCY	3 cut(s)	52, 206, 1268
RsaI	GTAC	1 cut(s)	972
RsaNI	GTAC	1 cut(s)	971
RseI	CAYNNNNRTG	1 cut(s)	1286
SacI	GAGCTC	2 cut(s)	199, 822
SalI	GTCGAC	1 cut(s)	326
SaqAI	TTAA	7 cut(s)	152, 179, 267, 477, 608, 788, 894
SatI	GCNGC	5 cut(s)	85, 506, 996, 1074, 1169
Sau3AI	GATC	8 cut(s)	16, 52, 189, 206, 795, 1095, 1212, 1268
SchI	GAGTC	1 cut(s)	1069
SduI	GDGCHC	2 cut(s)	199, 822
SfaNI	GCATC	2 cut(s)	580, 1329
SmiMI	CAYNNNNRTG	1 cut(s)	1286
SmlI	CTYRAG	1 cut(s)	48
SmoI	CTYRAG	1 cut(s)	48
Sse9I	AATT	7 cut(s)	156, 169, 363, 402, 417, 570, 984
SsiI	CCGC	3 cut(s)	376, 996, 1169
SspI	AATATT	1 cut(s)	892
SspMI	CTAG	1 cut(s)	138
SstI	GAGCTC	2 cut(s)	199, 822
StyI	CCWWGG	2 cut(s)	1091, 1235
TaaI	ACNGT	5 cut(s)	25, 116, 284, 1052, 1125
TaqI	TCGA	9 cut(s)	96, 222, 305, 316, 327, 514, 529, 809, 1058
TasI	AATT	7 cut(s)	156, 169, 363, 402, 417, 570, 984
TauI	GCSGC	2 cut(s)	998, 1171
TfiI	GAWTC	4 cut(s)	302, 346, 576, 1326
Tru1I	TTAA	7 cut(s)	152, 179, 267, 477, 608, 788, 894
Tru9I	TTAA	7 cut(s)	152, 179, 267, 477, 608, 788, 894
TscAI	CASTG	4 cut(s)	631, 679, 687, 709
TseFI	GTSAC	5 cut(s)	110, 622, 670, 776, 937
TseI	GCWGC	3 cut(s)	84, 505, 1073
Tsp45I	GTSAC	5 cut(s)	110, 622, 670, 776, 937
TspDTI	ATGAA	3 cut(s)	351, 414, 912
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	4 cut(s)	631, 679, 687, 709
VspI	ATTAAT	1 cut(s)	894
XceI	RCATGY	2 cut(s)	1182, 1285
XmiI	GTMKAC	2 cut(s)	327, 842
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.