FvH4_2g38570

tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
27868304 .. 27872247
3944 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g38570.t1

Sequence Viewer

Length: 1356 bp
ATGTCCGAAAATAAGGTCCACGGCGACGCTGTGGAAAACCCTAGAGTCACCTGGGACGGCTGCAGCGTCCTGCTCGACATCAACGACGGCGACCGTTTGGTTTTCTCGCGGCTCTCCGGTGGAGCAAAATTGAAAATTGGGAACAAGAACTGTTCCCTGCAGCCGTTGATTGGCTGCCCGTTTGGTTCGTTTTTTCGAGTCGAAAACGGAGAAGATGGGCCTTATTTGTCTAGATATACTCCCTCCAATGAAGGGAATAGTGTTCAAGAGCAAGGAGATTGCGAATCGAAAGACGAGTTGAGAGATAATCGAGCCTTGGTTGATAACAATAAAGCGCAGAGCCTTACGGGTGATGCCATCAATGAGATGCGACGACAGGGTGCAACTGGTGATGAAATAGTTGAAGCTCTCATTGCCAACAGTGCGACGTTTGAGAAAAAGACAGTGTTCTCGCAGGAGAAATATAGGCTTAAGAAGCAAAAAAAATATGCTCCAATTGTACTCCTTAGGCGGCCTTTCACAAGAAGTATATGTGAGGCGTACTTGAAGAAATATCCGGTTAGAATTGGATTCTTGCGGATGGATACGTTATGTCTGCTGCTTTCCATGGCTAATGTTTCTGCTAATTCCGATGTCCTTGTAGTCGACATGGTTGGAGGGCTTCTTACTGGTGCTGTGGCAGAACGTTTAGGAGGTACAGGTTATGTCTGCAATACATATCCTGGTGGCTCACCTTATCCTATGGATATAGCGAGGATATTCAACTTTGGAGAAGAAATTTGCAAGAGGATTGTGAGGTCTCCTCTCACTGACCTTCTTTTGTCCATCCAAACTGAAAAACCAAAACTCTCAAGTCAAAATGGGGACTCTTGTAGCATGGAAACTGAATCAAATGAACAAATATCTTCAACAGTTGGCACGGAAGAAGTTACTCTTGCGTCCGAGAATATGACATCAGATCTTATTGTTGACACTACCAACTCTGTCGAAAGAAAGCCGAGCAAATCAGCAAAACTAGGAGAAAAAGCACCACATGATATCATCAGCATGTGGAAAGAGAATGGCTTCTCTAGTTTAATAATAGCAGCGCCAGAGTTGGATACGTGGAGTTTAGTTAAAGAAATATTGCCACTCCTATCAAATTCTGCTCCTTTTGCTATTTATCACCAGTATCTTCAGCCGCTCGCAACATGCATGCATAATCTACAAGTTGGGAAAATGGCCGTTGGTTTGCAGATTTCAGAACCTTGGTTACGTGAATATCAGGTACTTCCATCAAGAACCCATCCATGTATGCAGATGAATGGATTCGGTGGGTACATTCTCAGCGGGACCAAGATATGTACCAACAACTGA

Protein Analysis

452

Amino Acids

49.68

Weight (kDa)

5.75

Isoelectric Point (pI)

41.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Gcd10p PF04189 22 - 275 4.9e-58 Gcd10p family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015480)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G45730
fragaria_vesca FvH4_2g38570
malus_domestica MD08G1013700.v1.1 MD15G1013300.v1.1
prunus_persica Prupe.1G366700_v2.0.a1
pyrus_communis pycom08g01240
rosa_chinensis RchiOBHm_Chr6g0302731
rosa_laevigata RLG00000011143
rosa_multiflora Rmu_sc0009897.1_g000006
rosa_roxburghii Rroxscaffold_7G00165370
rosa_rugosa Rorug06G0316600
rosa_samantha Rh6AG429900 Rh6BG472600 Rh6CG442400 Rh6DG429100
rosa_wichuraiana Rw6G037230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1183
AccI GTMKAC 1 cut(s) 645
AccII CGCG 1 cut(s) 109
AciI CCGC 5 cut(s) 109, 511, 577, 1181, 1329
AclI AACGTT 1 cut(s) 685
AcoI YGGCCR 1 cut(s) 1221
AcsI RAATTY 2 cut(s) 777, 1141
AcuI CTGAAG 1 cut(s) 1160
AfaI GTAC 6 cut(s) 501, 542, 697, 1269, 1319, 1345
AfiI CCNNNNNNNGG 2 cut(s) 170, 252
AflII CTTAAG 1 cut(s) 470
AgsI TTSAA 6 cut(s) 133, 266, 404, 547, 763, 909
AjnI CCWGG 2 cut(s) 50, 721
AluBI AGCT 1 cut(s) 407
AluI AGCT 1 cut(s) 407
Alw26I GTCTC 1 cut(s) 804
AoxI GGCC 3 cut(s) 218, 512, 1221
ApeKI GCWGC 6 cut(s) 60, 63, 160, 174, 598, 1085
ApoI RAATTY 2 cut(s) 777, 1141
ArsI GACNNNNNNTTYG 1 cut(s) 32
Asp700I GAANNNNTTC 2 cut(s) 1064, 1307
AspLEI GCGC 2 cut(s) 337, 1090
AspS9I GGNCC 3 cut(s) 16, 218, 1332
AsuHPI GGTGA 5 cut(s) 40, 362, 401, 723, 1157
AvaII GGWCC 2 cut(s) 16, 1332
AxyI CCTNAGG 1 cut(s) 506
BbvI GCAGC 6 cut(s) 47, 75, 161, 172, 585, 1097
BccI CCATC 6 cut(s) 209, 365, 574, 833, 1282, 1293
BceAI ACGGC 5 cut(s) 37, 73, 103, 148, 1208
BciT130I CCWGG 2 cut(s) 52, 723
BciVI GTATCC 2 cut(s) 577, 1093
BcoDI GTCTC 1 cut(s) 804
BfaI CTAG 4 cut(s) 42, 231, 1016, 1071
BfmI CTRYAG 2 cut(s) 61, 158
BfoI RGCGCY 1 cut(s) 1091
BfrI CTTAAG 1 cut(s) 470
BfuI GTATCC 2 cut(s) 577, 1093
BglII AGATCT 1 cut(s) 958
BisI GCNGC 9 cut(s) 61, 64, 110, 161, 175, 512, 599, 1086, 1181
BlsI GCNGC 9 cut(s) 62, 65, 111, 162, 176, 513, 600, 1087, 1182
Bme1390I CCNGG 2 cut(s) 52, 723
Bme18I GGWCC 2 cut(s) 16, 1332
BmgT120I GGNCC 3 cut(s) 16, 218, 1332
BmiI GGNNCC 1 cut(s) 1333
BmrFI CCNGG 2 cut(s) 52, 723
BmsI GCATC 2 cut(s) 343, 357
BplI GAGNNNNNCTC 2 cut(s) 787, 819
BpuEI CTTGAG 1 cut(s) 835
BsaAI YACGTR 2 cut(s) 1104, 1256
BsaI GGTCTC 1 cut(s) 804
BsaJI CCNNGG 5 cut(s) 19, 51, 315, 606, 1247
BsaWI WCCGGW 2 cut(s) 116, 556
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 252
Bse1I ACTGG 3 cut(s) 391, 673, 1168
Bse21I CCTNAGG 1 cut(s) 506
Bse3DI GCAATG 1 cut(s) 411
BseBI CCWGG 2 cut(s) 52, 723
BseDI CCNNGG 5 cut(s) 19, 51, 315, 606, 1247
BseGI GGATG 3 cut(s) 585, 825, 1285
BseLI CCNNNNNNNGG 2 cut(s) 170, 252
BseMI GCAATG 1 cut(s) 411
BseMII CTCAG 1 cut(s) 1339
BseNI ACTGG 3 cut(s) 391, 673, 1168
BseRI GAGGAG 1 cut(s) 792
BseXI GCAGC 6 cut(s) 47, 75, 161, 172, 585, 1097
Bsh1236I CGCG 1 cut(s) 109
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 3 cut(s) 220, 514, 1223
BsiEI CGRYCG 1 cut(s) 94
BsiSI CCGG 2 cut(s) 117, 557
BslFI GGGAC 3 cut(s) 68, 878, 1345
BslI CCNNNNNNNGG 2 cut(s) 170, 252
BsmAI GTCTC 1 cut(s) 804
BsmFI GGGAC 3 cut(s) 68, 878, 1345
BsnI GGCC 3 cut(s) 220, 514, 1223
Bso31I GGTCTC 1 cut(s) 804
Bsp143I GATC 1 cut(s) 958
Bsp19I CCATGG 1 cut(s) 606
BspACI CCGC 5 cut(s) 109, 511, 577, 1181, 1329
BspANI GGCC 3 cut(s) 220, 514, 1223
BspCNI CTCAG 1 cut(s) 1338
BspFNI CGCG 1 cut(s) 109
BspLI GGNNCC 1 cut(s) 1333
BspMAI CTGCAG 2 cut(s) 65, 162
BspTI CTTAAG 1 cut(s) 470
BspTNI GGTCTC 1 cut(s) 804
BsrBI CCGCTC 1 cut(s) 1183
BsrDI GCAATG 1 cut(s) 411
BsrI ACTGG 3 cut(s) 391, 673, 1168
BssECI CCNNGG 5 cut(s) 19, 51, 315, 606, 1247
BssMI GATC 1 cut(s) 958
BssT1I CCWWGG 3 cut(s) 315, 606, 1247
Bst2UI CCWGG 2 cut(s) 52, 723
Bst4CI ACNGT 5 cut(s) 95, 152, 422, 445, 913
BstAFI CTTAAG 1 cut(s) 470
BstBAI YACGTR 2 cut(s) 1104, 1256
BstC8I GCNNGC 2 cut(s) 1185, 1196
BstDEI CTNAG 2 cut(s) 506, 1325
BstDSI CCRYGG 2 cut(s) 19, 606
BstF5I GGATG 3 cut(s) 585, 825, 1285
BstFNI CGCG 1 cut(s) 109
BstH2I RGCGCY 1 cut(s) 1091
BstHHI GCGC 2 cut(s) 337, 1090
BstKTI GATC 1 cut(s) 961
BstMAI GTCTC 1 cut(s) 804
BstMBI GATC 1 cut(s) 958
BstMCI CGRYCG 1 cut(s) 94
BstMWI GCNNNNNNNGC 4 cut(s) 413, 422, 475, 1154
BstNI CCWGG 2 cut(s) 52, 723
BstNSI RCATGY 3 cut(s) 1051, 1194, 1198
BstSCI CCNGG 2 cut(s) 50, 721
BstSFI CTRYAG 2 cut(s) 61, 158
BstUI CGCG 1 cut(s) 109
BstV1I GCAGC 6 cut(s) 47, 75, 161, 172, 585, 1097
BstX2I RGATCY 1 cut(s) 958
BstYI RGATCY 1 cut(s) 958
Bsu36I CCTNAGG 1 cut(s) 506
BsuI GTATCC 2 cut(s) 577, 1093
BsuRI GGCC 3 cut(s) 220, 514, 1223
BtgI CCRYGG 2 cut(s) 19, 606
BtsCI GGATG 3 cut(s) 585, 825, 1285
BtsIMutI CAGTG 3 cut(s) 427, 450, 807
Cac8I GCNNGC 2 cut(s) 1185, 1196
CfoI GCGC 2 cut(s) 337, 1090
Cfr13I GGNCC 3 cut(s) 16, 218, 1332
CseI GACGC 3 cut(s) 35, 55, 927
Csp6I GTAC 6 cut(s) 500, 541, 696, 1268, 1318, 1344
CviAII CATG 8 cut(s) 607, 649, 877, 1034, 1048, 1191, 1195, 1290
CviQI GTAC 6 cut(s) 500, 541, 696, 1268, 1318, 1344
DdeI CTNAG 2 cut(s) 506, 1325
DpnI GATC 1 cut(s) 960
DpnII GATC 1 cut(s) 958
EaeI YGGCCR 1 cut(s) 1221
Eco130I CCWWGG 3 cut(s) 315, 606, 1247
Eco31I GGTCTC 1 cut(s) 804
Eco32I GATATC 1 cut(s) 1039
Eco47I GGWCC 2 cut(s) 16, 1332
Eco57I CTGAAG 1 cut(s) 1160
Eco81I CCTNAGG 1 cut(s) 506
EcoRII CCWGG 2 cut(s) 50, 721
EcoRV GATATC 1 cut(s) 1039
EcoT14I CCWWGG 3 cut(s) 315, 606, 1247
EcoT22I ATGCAT 2 cut(s) 1196, 1200
ErhI CCWWGG 3 cut(s) 315, 606, 1247
FaeI CATG 8 cut(s) 610, 652, 880, 1037, 1051, 1194, 1198, 1293
FalI AAGNNNNNCTT 2 cut(s) 918, 950
FaqI GGGAC 3 cut(s) 68, 878, 1345
FatI CATG 8 cut(s) 606, 648, 876, 1033, 1047, 1190, 1194, 1289
FauI CCCGC 1 cut(s) 1322
FblI GTMKAC 1 cut(s) 645
Fnu4HI GCNGC 9 cut(s) 61, 64, 110, 161, 175, 512, 599, 1086, 1181
FokI GGATG 3 cut(s) 592, 812, 1272
Fsp4HI GCNGC 9 cut(s) 61, 64, 110, 161, 175, 512, 599, 1086, 1181
FspBI CTAG 4 cut(s) 42, 231, 1016, 1071
GlaI GCGC 2 cut(s) 336, 1089
GluI GCNGC 9 cut(s) 61, 64, 110, 161, 175, 512, 599, 1086, 1181
HaeII RGCGCY 1 cut(s) 1091
HaeIII GGCC 3 cut(s) 220, 514, 1223
HapII CCGG 2 cut(s) 117, 557
HgaI GACGC 3 cut(s) 35, 55, 927
HhaI GCGC 2 cut(s) 337, 1090
Hin1II CATG 8 cut(s) 610, 652, 880, 1037, 1051, 1194, 1198, 1293
Hin6I GCGC 2 cut(s) 335, 1088
HinP1I GCGC 2 cut(s) 335, 1088
HincII GTYRAC 2 cut(s) 646, 970
HindII GTYRAC 2 cut(s) 646, 970
HinfI GANTC 7 cut(s) 45, 198, 284, 570, 866, 887, 1308
HpaII CCGG 2 cut(s) 117, 557
HphI GGTGA 5 cut(s) 40, 362, 401, 723, 1157
Hpy166II GTNNAC 3 cut(s) 19, 646, 970
Hpy188I TCNGA 5 cut(s) 7, 631, 943, 958, 1243
Hpy188III TCNNGA 3 cut(s) 231, 266, 1278
Hpy8I GTNNAC 3 cut(s) 19, 646, 970
Hpy99I CGWCG 4 cut(s) 29, 89, 375, 430
HpyAV CCTTC 2 cut(s) 245, 824
HpyCH4III ACNGT 5 cut(s) 95, 152, 422, 445, 913
HpyCH4IV ACGT 5 cut(s) 428, 587, 685, 1103, 1255
HpyCH4V TGCA 9 cut(s) 63, 160, 383, 711, 783, 1194, 1198, 1234, 1297
HpyF10VI GCNNNNNNNGC 4 cut(s) 413, 422, 475, 1154
HpyF3I CTNAG 2 cut(s) 506, 1325
HpySE526I ACGT 5 cut(s) 428, 587, 685, 1103, 1255
Hsp92II CATG 8 cut(s) 610, 652, 880, 1037, 1051, 1194, 1198, 1293
HspAI GCGC 2 cut(s) 335, 1088
Kzo9I GATC 1 cut(s) 958
LmnI GCTCC 3 cut(s) 122, 496, 1153
Lsp1109I GCAGC 6 cut(s) 47, 75, 161, 172, 585, 1097
LweI GCATC 2 cut(s) 343, 357
MaeI CTAG 4 cut(s) 42, 231, 1016, 1071
MaeII ACGT 5 cut(s) 428, 587, 685, 1103, 1255
MaeIII GTNAC 3 cut(s) 46, 928, 1251
MalI GATC 1 cut(s) 960
MbiI CCGCTC 1 cut(s) 1183
MboI GATC 1 cut(s) 958
MboII GAAGA 6 cut(s) 224, 559, 785, 897, 935, 1166
MfeI CAATTG 1 cut(s) 495
MflI RGATCY 1 cut(s) 958
MluCI AATT 7 cut(s) 128, 135, 495, 564, 625, 777, 1141
MlyI GAGTC 3 cut(s) 54, 207, 860
MmeI TCCRAC 2 cut(s) 634, 1077
MnlI CCTC 8 cut(s) 253, 529, 650, 686, 747, 780, 789, 813
Mph1103I ATGCAT 2 cut(s) 1196, 1200
MroXI GAANNNNTTC 2 cut(s) 1064, 1307
MseI TTAA 3 cut(s) 471, 1076, 1116
MslI CAYNNNNRTG 1 cut(s) 1046
MspA1I CMGCKG 1 cut(s) 1329
MspCI CTTAAG 1 cut(s) 470
MspI CCGG 2 cut(s) 117, 557
MspR9I CCNGG 2 cut(s) 52, 723
MunI CAATTG 1 cut(s) 495
MvaI CCWGG 2 cut(s) 52, 723
MvnI CGCG 1 cut(s) 109
MwoI GCNNNNNNNGC 4 cut(s) 413, 422, 475, 1154
NcoI CCATGG 1 cut(s) 606
NdeII GATC 1 cut(s) 958
NlaIII CATG 8 cut(s) 610, 652, 880, 1037, 1051, 1194, 1198, 1293
NlaIV GGNNCC 1 cut(s) 1333
NmeAIII GCCGAG 1 cut(s) 1023
NmuCI GTSAC 1 cut(s) 46
NsiI ATGCAT 2 cut(s) 1196, 1200
NspI RCATGY 3 cut(s) 1051, 1194, 1198
PaeI GCATGC 1 cut(s) 1198
PcsI WCGNNNNNNNCGW 2 cut(s) 63, 81
PdmI GAANNNNTTC 2 cut(s) 1064, 1307
PfeI GAWTC 4 cut(s) 284, 570, 887, 1308
PkrI GCNGC 9 cut(s) 62, 65, 111, 162, 176, 513, 600, 1087, 1182
PleI GAGTC 3 cut(s) 53, 206, 860
PpsI GAGTC 3 cut(s) 53, 206, 860
Ppu21I YACGTR 2 cut(s) 1104, 1256
Psp1406I AACGTT 1 cut(s) 685
Psp6I CCWGG 2 cut(s) 50, 721
PspGI CCWGG 2 cut(s) 50, 721
PspN4I GGNNCC 1 cut(s) 1333
PspPI GGNCC 3 cut(s) 16, 218, 1332
PsrI GAACNNNNNNTAC 2 cut(s) 1236, 1268
PstI CTGCAG 2 cut(s) 65, 162
PsuI RGATCY 1 cut(s) 958
RsaI GTAC 6 cut(s) 501, 542, 697, 1269, 1319, 1345
RsaNI GTAC 6 cut(s) 500, 541, 696, 1268, 1318, 1344
RseI CAYNNNNRTG 1 cut(s) 1046
SalI GTCGAC 1 cut(s) 644
SaqAI TTAA 3 cut(s) 471, 1076, 1116
SatI GCNGC 9 cut(s) 61, 64, 110, 161, 175, 512, 599, 1086, 1181
Sau3AI GATC 1 cut(s) 958
Sau96I GGNCC 3 cut(s) 16, 218, 1332
SchI GAGTC 3 cut(s) 54, 207, 860
ScrFI CCNGG 2 cut(s) 52, 723
SfaNI GCATC 2 cut(s) 343, 357
SfcI CTRYAG 2 cut(s) 61, 158
SinI GGWCC 2 cut(s) 16, 1332
SmiMI CAYNNNNRTG 1 cut(s) 1046
SmlI CTYRAG 2 cut(s) 470, 850
SmoI CTYRAG 2 cut(s) 470, 850
SphI GCATGC 1 cut(s) 1198
Sse9I AATT 7 cut(s) 128, 135, 495, 564, 625, 777, 1141
SsiI CCGC 5 cut(s) 109, 511, 577, 1181, 1329
SspI AATATT 1 cut(s) 1125
SspMI CTAG 4 cut(s) 42, 231, 1016, 1071
StyD4I CCNGG 2 cut(s) 50, 721
StyI CCWWGG 3 cut(s) 315, 606, 1247
TaaI ACNGT 5 cut(s) 95, 152, 422, 445, 913
TaiI ACGT 5 cut(s) 431, 590, 688, 1106, 1258
TaqI TCGA 7 cut(s) 75, 196, 201, 287, 310, 645, 987
TasI AATT 7 cut(s) 128, 135, 495, 564, 625, 777, 1141
TatI WGTACW 1 cut(s) 499
TauI GCSGC 3 cut(s) 112, 514, 1183
TfiI GAWTC 4 cut(s) 284, 570, 887, 1308
Tru1I TTAA 3 cut(s) 471, 1076, 1116
Tru9I TTAA 3 cut(s) 471, 1076, 1116
TscAI CASTG 3 cut(s) 427, 450, 814
TseFI GTSAC 1 cut(s) 46
TseI GCWGC 6 cut(s) 60, 63, 160, 174, 598, 1085
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 4 cut(s) 264, 408, 909, 1316
TspGWI ACGGA 2 cut(s) 222, 935
TspRI CASTG 3 cut(s) 427, 450, 814
Vha464I CTTAAG 1 cut(s) 470
VpaK11BI GGWCC 2 cut(s) 16, 1332
XapI RAATTY 2 cut(s) 777, 1141
XbaI TCTAGA 1 cut(s) 230
XceI RCATGY 3 cut(s) 1051, 1194, 1198
XmiI GTMKAC 1 cut(s) 645
XmnI GAANNNNTTC 2 cut(s) 1064, 1307
XspI CTAG 4 cut(s) 42, 231, 1016, 1071
Zsp2I ATGCAT 2 cut(s) 1196, 1200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.